rna5085, rna5085 (mRNA) Nannochloropsis gaditana

Overview
Namerna5085
Unique Namerna5085
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length741
Alignment locationCM002465.1:79845..80472 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101476g2.5584.mrna
Orig protein idgnl|cribi|Naga_101476g2.5584
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:79845..80472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101476g2gene4909Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25600.1cds5073Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5085rna5085-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5085 ID=rna5085|Name=rna5085|organism=Nannochloropsis gaditana|type=mRNA|length=741bp
ATGGTCCTTCCTCCCTCCTCATTGCAGGACGGAGGGAACCTTCTAGAGTG
TGACCACGACCTCCGGGACAAGTCCATTCACTGCAAAAAGGTCTACCACG
AATACTGCCTGAACTACACCGTCTCCACCAATCCTAACGTCCGCTGGTAC
TGCCCGCGGCATTTGTGCGCTGTCTGTGGGGAAAAGAGGATCCGGCATTG
CTGCCGCTACTGTCCAAATAGCTACTGTCAGGAGCACGTCCCTCCCTTGG
CTTTCCCCATCGCAGAGCAGCTGAAGCCCCGCGAGCTGTCCCATCACCAA
CTCCAAGAAATTTCCTGCCCCGACTGCGTCTGCTTGGTGATTCGTGCTCG
CTTTCGGCAGGAGCTCAAGTCGGGTTTCTGCTCCGTAGTCGACGACATTC
TTGACCACTATCTGCATTTTGGTCAGATTGAGACGGAGGGAGGGCCAGAA
GGAAAGGAAGAGGTGGGAAAGAAGCGTGAGAGAGCAAGAGTCCGCCCGTT
TCATCCAGTCTTGCAGACTTGTTTCGTGGCAGAAGGTCATGAAGTGCCAT
GGAATAACGATAATGATAAAGAACGGGAGGAAGTGAAAGAGCTTGAGAGG
GACGAGGAGCGTGAGGAGAGGAAAAATGGTTGGGCGTGGCGGGTTAGGAA
ATGCAGGAGAGGAGAAGGTTACACGCTGTATGAACCGAAGGCACATAAGT
GTCCACAAATTGAGACTGCTCAAGAAAAGCTAACCATTTGA
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protein sequence of rna5085

>rna5085-protein ID=rna5085-protein|Name=rna5085|organism=Nannochloropsis gaditana|type=polypeptide|length=146bp
MPSEPTALVPSSTCARTAPTPPHTNAVPTGNGLRAQPPFPPPFGPPPCPA
PPADDWFRATLIRNGKVIEEGAKCRLWAVPASVSLGLKMPSGGEERAKRR
TVRGRRAVRRGGAWCAGVLGEVGGGGGGGGGGGGGGGGGVEEEGRG
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mRNA from alignment at CM002465.1:79845..80472-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5085 ID=rna5085|Name=rna5085|organism=Nannochloropsis gaditana|type=mRNA|length=628bp|location=Sequence derived from alignment at CM002465.1:79845..80472- (Nannochloropsis gaditana)
GAAGGCTTTCCCTCACTGCCCTCGCTACTATCTGAAGACACTCCATGCGC
CTTGTCTTGCATTCTGCCCACGCTTTCACCACGACTAATCGCTTGATCTG
TCTGTCTTACAAGCAGGTGTAGACGGGCTTGGATCTTCTTTGCTGCGGGG
TCCTCTCCCAGCAAAGGGCAGGCGGGCCTTTTGGTCCCCCATGCCAAGTG
AACCCACCGCTCTCGTCCCCTCGTCCACGTGCGCCCGAACCGCTCCGACG
CCTCCACACACCAATGCCGTTCCAACAGGCAATGGACTTCGGGCACAGCC
TCCTTTCCCCCCTCCTTTCGGCCCTCCGCCTTGTCCAGCTCCGCCAGCGG
ACGATTGGTTTCGTGCAACTTTGATCCGGAATGGGAAGGTCATCGAAGAA
GGAGCGAAGTGCCGCCTATGGGCCGTCCCGGCCAGCGTATCCCTCGGCTT
GAAGATGCCGTCGGGGGGGGAGGAAAGGGCAAAGAGACGCACGGTACGTG
GGAGGAGGGCAGTGCGGAGGGGGGGTGCTTGGTGTGCCGGTGTCCTTGGG
GAGGTGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGTGGAAGAGGAGGGGAGGGGA
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Coding sequence (CDS) from alignment at CM002465.1:79845..80472-

>rna5085 ID=rna5085|Name=rna5085|organism=Nannochloropsis gaditana|type=CDS|length=438bp|location=Sequence derived from alignment at CM002465.1:79845..80472- (Nannochloropsis gaditana)
ATGCCAAGTGAACCCACCGCTCTCGTCCCCTCGTCCACGTGCGCCCGAAC
CGCTCCGACGCCTCCACACACCAATGCCGTTCCAACAGGCAATGGACTTC
GGGCACAGCCTCCTTTCCCCCCTCCTTTCGGCCCTCCGCCTTGTCCAGCT
CCGCCAGCGGACGATTGGTTTCGTGCAACTTTGATCCGGAATGGGAAGGT
CATCGAAGAAGGAGCGAAGTGCCGCCTATGGGCCGTCCCGGCCAGCGTAT
CCCTCGGCTTGAAGATGCCGTCGGGGGGGGAGGAAAGGGCAAAGAGACGC
ACGGTACGTGGGAGGAGGGCAGTGCGGAGGGGGGGTGCTTGGTGTGCCGG
TGTCCTTGGGGAGGTGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGTGGAAGAGGAGGGGAGGGGA
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Synonyms
Publications