rna5080, rna5080 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5080
Unique Name	rna5080
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	969
Alignment location	CM002465.1:59870..62539 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100543g1.5680.mrna
Orig protein id	gnl\|cribi\|Naga_100543g1.5680
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:59870..62539 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100543g1	gene4904	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25605.1	cds5068	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5080	rna5080-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:59870..62539-
coding sequence from alignment at CM002465.1:59870..62539-

mRNA sequence

>rna5080 ID=rna5080|Name=rna5080|organism=Nannochloropsis gaditana|type=mRNA|length=969bp
TCCTACCTTTTTCCTCCGTCCCTCCCGTCCCCCAGGGTGGTGGTGGCGAA
CGAGGAGGAGCTCGTGCGGATGCTGGGCCCCGGAAACATGTTCAAGACTG
CCAGGGACATCACATACCCCGTCAGTCTGGGCAACGAAGAGAGAGTCCTC
CACACCCTCCTAAAGATGGTGACAGACGCTCTGGCCCTGTACCCCACCCG
GCTTGAGGACGACGTGGCGCGTTTGGCGCGAAGAGACGATGCCAGCTTAC
GTCCGTTTTCGAACCGGCGGCACGCGTTGATACAGGTGCGGGGGGAAAAG
GAAGTCTTGTCCGCCTTCCAGACACTGTGCTCGACGGCATTGACGCTATT
GGATGTGAGCGATAACGTCTTCAAGGAGACGGTGAACAGCTTGTACAGTG
AGGGTAATTTCTTCGCGGCTAACTACTGCTCGGACGTGTTGTACCGCCTA
CGGCAGGAGGAGTATCGAAGGGCAGATGCCGCCGCTGCTCAAAGATCTGC
CAAAGTGAATCTCACAAATCCAACAATCGTTTAAATGAAGATGTATGGAT
GCAAGAGATGCTGTACAACCGATAGTGTCAACCAAAATAGGTAAATTGCT
TTCGTGGGCACGCGCCCTGAAGTGGGAAGCTCGCAAAAGGAAAGAAACCC
CAAAAGCAAGAAATGTGCCAAAGCTCGGCGTCATATACCCCATGGATGAA
ATTTGCCTTGAAGGTCTGTTACGTACAGGCATGCGACGCTAAGTTCCCTT
TTGTTCGTGTTTGGTCGGAAGCCATGACTCCTCATTTTCGTAGCTGCTCT
CTTAGAGCGGCATTTCTGGTAGGTTGATGCTTTCACTAACTTACTGAACG
AGCCATGACTGCTCTCTTGCGATCGCCTGACACCTAATCTTTAATGCTTT
ATCCACGGAAATGACCACTGCAAAGTACAACATGCGCAGGTGCTGTGCCA
TTGCCTAGACCATATATTT

protein sequence of rna5080

>rna5080-protein ID=rna5080-protein|Name=rna5080|organism=Nannochloropsis gaditana|type=polypeptide|length=671bp
MRVTVALASLILFGAGWALTSVVAQGCSGLILTGKIHPSSKRQILAGQGQ
AKIAIKVRSKQTVEDLNVKVALPAGLSVKRTASPRRAGSPVIVSNIDGTT
AIYWTKFNLTHKHLFRVKVGVENCASEALAVRVLAYVLNATDSATECSQS
LANPLNLRIRYPASQKYGLGKKKQKMPMTCAPTPAPTTNPSAPFVPFGVG
QRCLEASRLAPFEDRRLKGQEDTIKISEDSKVDDKIHRPLGLVAIQTPFD
CYTYCSLNGGESAPFFFNWNTATTQCFCCGGQCTLILDPEFDTFQVLIPA
TAAPTVAPSLGPAPVPTSSPTATPSQGPSIGPTTLPSALPTVLPTISPTF
NPTAAPSEAPTDNPTASPTLSPTAAPTLSPTASPTAVPTASPTPSPTAAP
TLSPTASPTTAPTASPTPSPTAAPTLSPTASPTTAPTASPTPSPTAAPTL
SPTASPTAAPSASPTPSPTAAPSMAPTIICYNGEARVVMADGQYKPVIAL
HKGDLVSVDPLRPHVHAKVLSLVEAPIEEGRGSPMCELAPGFFLSNLHPI
RMNGTRWIRPEWEFHCSTRKYFSSLFNIILEEGVHHTVNIEGFAVATWVK
YPVGVPMIDRPYKLEMYRLVEASPNFSAGLVKIDTKEMLKLKMAWLEANP
MAMAMERFYTTSPVGSSHTEL

mRNA from alignment at CM002465.1:59870..62539-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5080 ID=rna5080|Name=rna5080|organism=Nannochloropsis gaditana|type=mRNA|length=2670bp|location=Sequence derived from alignment at CM002465.1:59870..62539- (Nannochloropsis gaditana)
ATGCGAGTTACTGTCGCTTTAGCCTCGCTCATTCTGTTCGGTGCAGGGTG
GGCTCTCACTAGTGTGGTAGCACAAGGCTGTTCAGGGCTCATCTTGACTG
GTAAAATCCATCCTTCCTCCAAGCGCCAGATCTTGGCTGGGCAAGGGCAA
GCTAAGATTGCAATTAAAGTTCGGAGCAAACAGACCGTAGAAGACTTGAA
CGTCAAGGTTGCTCTACCAGCGGGACTGAGTGTAAAAAGAACAGCTTCCC
CTCGAAGAGCGGGGTCCCCCGTAATTGTCTCAAATATCGATGGTACAACA
GCAATATACTGGACAAAGTTTAACTTGACTCATAAACATTTGTTTAGGGT
CAAAGTCGGGGTGGAAAATTGTGCTTCTGAGGCTCTAGCTGTGAGAGTAC
TCGCGTATGTTCTCAACGCGACAGACTCGGCGACCGAATGTTCCCAGTCG
CTAGCCAATCCCCTAAATTTACGCATCCGCTATCCCGCCAGCCAGAAATA
TGGACTCGGAAAAAAGAAACAGAAGATGCCAATGACTTGTGCCCCAACAC
CAGCCCCTACAACCAACCCTTCAGCGCCATTTGTGCCCTTCGGAGTCGGG
CAGCGATGCCTTGAAGCAAGTAGACTAGCACCTTTCGAAGACAGGCGTTT
GAAAGGGCAAGAAGACACAATTAAGATTTCAGAGGATTCTAAAGTAGATG
ATAAAATCCACCGACCGCTGGGTCTTGTGGCAATCCAAACACCTTTCGAT
TGCTACACATACTGTTCGTTGAATGGGGGAGAATCCGCACCTTTCTTCTT
CAACTGGAATACAGCGACAACTCAATGCTTTTGCTGTGGTGGACAATGTA
CATTGATTCTTGATCCAGAATTTGATACATTTCAGGTTTTAATACCTGCA
ACTGCGGCTCCTACTGTTGCCCCCTCCCTTGGTCCGGCACCTGTTCCTAC
CTCTTCTCCCACAGCAACTCCCTCTCAAGGTCCTAGTATTGGCCCAACGA
CCTTACCCAGTGCACTTCCTACCGTCCTTCCTACGATTTCTCCAACTTTC
AACCCCACTGCTGCTCCGAGTGAAGCTCCAACCGATAACCCTACAGCTTC
CCCTACCCTCTCGCCCACTGCAGCTCCTACTCTCAGTCCCACTGCCTCTC
CTACAGCCGTACCTACAGCTTCTCCTACCCCCTCACCCACTGCAGCTCCT
ACTCTCAGTCCCACTGCCTCTCCTACAACCGCACCTACAGCTTCTCCTAC
CCCCTCACCCACTGCAGCTCCTACTCTCAGTCCCACTGCCTCTCCTACAA
CCGCACCTACAGCTTCTCCTACCCCCTCGCCCACTGCAGCTCCTACTCTC
AGTCCCACTGCCTCTCCTACAGCCGCACCTTCAGCTTCTCCTACCCCCTC
GCCCACTGCAGCTCCTTCTATGGCTCCAACCATAATTTGTTACAATGGAG
AGGCGCGCGTCGTAATGGCAGATGGGCAGTATAAGCCCGTGATCGCCCTT
CACAAGGGTGATCTAGTCTCTGTTGACCCCTTGCGACCTCACGTTCACGC
AAAGGTGCTGTCGCTTGTAGAGGCACCGATCGAAGAGGGAAGGGGATCTC
CCATGTGCGAGCTCGCACCAGGCTTTTTCTTGAGCAATTTACATCCCATT
CGCATGAATGGTACGAGATGGATTCGTCCAGAATGGGAGTTCCATTGCAG
TACAAGGAAATATTTTTCGAGTCTTTTCAACATAATTCTTGAGGAAGGAG
TTCACCATACTGTCAACATCGAGGGTTTTGCTGTGGCAACGTGGGTGAAG
TATCCTGTGGGTGTGCCCATGATCGATCGACCTTACAAACTGGAGATGTA
TCGGCTAGTAGAGGCTAGTCCGAATTTCTCAGCCGGCCTTGTGAAAATTG
ATACCAAGGAAATGCTAAAACTTAAGATGGCGTGGCTGGAAGCCAACCCT
ATGGCAATGGCAATGGAACGCTTTTACACTACATCACCTGTGGGGTCATC
TCATACGGAGTTATAATTAATATTTCTGACTGTCGTAAGACCTAAGACAT
TATTTGATGCTTCAGCGTACGTAGGTGCTAGGACGAAGTCACACACACGG
CACATGACGCCACAGGATCGAATGGACTCTCCGAAGAGCCAGGTGCTCAG
TCACTGATGTGACTTAGTCTTCCGAGCTGGAAAGGTGTCCTTATCAGAAT
TGCACGCGGCAGACGGACGAGAATAAGACTCTAGCCATTGTATTGTATAC
TACCTCAGGCTCTTTCATTCCTTTAAAAAGTCTTCGGTATAGTAAGTATT
AAGTATGATTGCAAGCGATTTAATAATAAGTATCAAGTATGAGTGCAAGT
TGTTTAATAATTAGTATCAAGTTTGAGTGCAAGTTGTTTAATAATCAGTA
TAAGTATGAGTGCAAGCTGTTTAATTGTAAAATTGTCAATCGGAATCGCC
TTGGCTACAATGAGGTAGGATCCGCTTCTTTCCTTTGTTGGAATCGATAA
TGCCCATTGTGTCCATTGAGAGGCCTATGCATTTTCGGACTTTGCAGGAG
TTCACGTGGAAGCATCGTCATTCCCTCCTATAAGCTATCCATTTTTCACT
CCATATATCGGTCAGTACCAGCGATTCAAGAGGCCACACGTTTCTTTTGG
CGAGAAAAGATAAGAAAAGG

Coding sequence (CDS) from alignment at CM002465.1:59870..62539-

>rna5080 ID=rna5080|Name=rna5080|organism=Nannochloropsis gaditana|type=CDS|length=2016bp|location=Sequence derived from alignment at CM002465.1:59870..62539- (Nannochloropsis gaditana)
ATGCGAGTTACTGTCGCTTTAGCCTCGCTCATTCTGTTCGGTGCAGGGTG
GGCTCTCACTAGTGTGGTAGCACAAGGCTGTTCAGGGCTCATCTTGACTG
GTAAAATCCATCCTTCCTCCAAGCGCCAGATCTTGGCTGGGCAAGGGCAA
GCTAAGATTGCAATTAAAGTTCGGAGCAAACAGACCGTAGAAGACTTGAA
CGTCAAGGTTGCTCTACCAGCGGGACTGAGTGTAAAAAGAACAGCTTCCC
CTCGAAGAGCGGGGTCCCCCGTAATTGTCTCAAATATCGATGGTACAACA
GCAATATACTGGACAAAGTTTAACTTGACTCATAAACATTTGTTTAGGGT
CAAAGTCGGGGTGGAAAATTGTGCTTCTGAGGCTCTAGCTGTGAGAGTAC
TCGCGTATGTTCTCAACGCGACAGACTCGGCGACCGAATGTTCCCAGTCG
CTAGCCAATCCCCTAAATTTACGCATCCGCTATCCCGCCAGCCAGAAATA
TGGACTCGGAAAAAAGAAACAGAAGATGCCAATGACTTGTGCCCCAACAC
CAGCCCCTACAACCAACCCTTCAGCGCCATTTGTGCCCTTCGGAGTCGGG
CAGCGATGCCTTGAAGCAAGTAGACTAGCACCTTTCGAAGACAGGCGTTT
GAAAGGGCAAGAAGACACAATTAAGATTTCAGAGGATTCTAAAGTAGATG
ATAAAATCCACCGACCGCTGGGTCTTGTGGCAATCCAAACACCTTTCGAT
TGCTACACATACTGTTCGTTGAATGGGGGAGAATCCGCACCTTTCTTCTT
CAACTGGAATACAGCGACAACTCAATGCTTTTGCTGTGGTGGACAATGTA
CATTGATTCTTGATCCAGAATTTGATACATTTCAGGTTTTAATACCTGCA
ACTGCGGCTCCTACTGTTGCCCCCTCCCTTGGTCCGGCACCTGTTCCTAC
CTCTTCTCCCACAGCAACTCCCTCTCAAGGTCCTAGTATTGGCCCAACGA
CCTTACCCAGTGCACTTCCTACCGTCCTTCCTACGATTTCTCCAACTTTC
AACCCCACTGCTGCTCCGAGTGAAGCTCCAACCGATAACCCTACAGCTTC
CCCTACCCTCTCGCCCACTGCAGCTCCTACTCTCAGTCCCACTGCCTCTC
CTACAGCCGTACCTACAGCTTCTCCTACCCCCTCACCCACTGCAGCTCCT
ACTCTCAGTCCCACTGCCTCTCCTACAACCGCACCTACAGCTTCTCCTAC
CCCCTCACCCACTGCAGCTCCTACTCTCAGTCCCACTGCCTCTCCTACAA
CCGCACCTACAGCTTCTCCTACCCCCTCGCCCACTGCAGCTCCTACTCTC
AGTCCCACTGCCTCTCCTACAGCCGCACCTTCAGCTTCTCCTACCCCCTC
GCCCACTGCAGCTCCTTCTATGGCTCCAACCATAATTTGTTACAATGGAG
AGGCGCGCGTCGTAATGGCAGATGGGCAGTATAAGCCCGTGATCGCCCTT
CACAAGGGTGATCTAGTCTCTGTTGACCCCTTGCGACCTCACGTTCACGC
AAAGGTGCTGTCGCTTGTAGAGGCACCGATCGAAGAGGGAAGGGGATCTC
CCATGTGCGAGCTCGCACCAGGCTTTTTCTTGAGCAATTTACATCCCATT
CGCATGAATGGTACGAGATGGATTCGTCCAGAATGGGAGTTCCATTGCAG
TACAAGGAAATATTTTTCGAGTCTTTTCAACATAATTCTTGAGGAAGGAG
TTCACCATACTGTCAACATCGAGGGTTTTGCTGTGGCAACGTGGGTGAAG
TATCCTGTGGGTGTGCCCATGATCGATCGACCTTACAAACTGGAGATGTA
TCGGCTAGTAGAGGCTAGTCCGAATTTCTCAGCCGGCCTTGTGAAAATTG
ATACCAAGGAAATGCTAAAACTTAAGATGGCGTGGCTGGAAGCCAACCCT
ATGGCAATGGCAATGGAACGCTTTTACACTACATCACCTGTGGGGTCATC
TCATACGGAGTTATAA

Synonyms

Publications