rna5073, rna5073 (mRNA) Nannochloropsis gaditana

Overview
Namerna5073
Unique Namerna5073
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1837
Alignment locationCM002465.1:41459..41828 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100811g2.10701.mrna
Orig protein idgnl|cribi|Naga_100811g2.10701
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:41459..41828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100811g2gene4897Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5073rna5073-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25613.1cds5061Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5073 ID=rna5073|Name=rna5073|organism=Nannochloropsis gaditana|type=mRNA|length=1837bp
TCCCTCCCGCCCTCGTCCTCGACCTCGGCCTCCTCGAGGGGTGGGCTGTA
CATTGCGGGTTTCCCGGGCACAGGGAAGACAGCCACGGTCCACCACGTGC
TGAGTCGCCTCCGTCGGGAACGCAGAGACCTGGGTTTCACGCATTGCGAG
ATCAACGGGCTCACGCTCTCCAACCCCACGCAGGCCTACTCTCTTCTCTG
GGCTGCTCTCACGGACCAGCGCGAGGCTGCGCTTTCTCCCGCCCGTGCTC
TGAGCAAACTCGCCGATTTCTTCACCGGCCCCTCCTCCACCGTGCGCTCC
ACCCCTTCGTCCGCCTCCCTGTCTACCTCCCGTCAGCGGCGCGCCCGCCC
CGTGGTTGTGGTTTTGGACGAGATGGATTACCTGGTCGGGAAGAGCCTGC
ATACAATGGAGGGGAAGGTCATCTACAACTTCCTGGAGTGGGGCGCCGGC
GGAGACGGAGGCCGGCGAGGCCTCATTCTTCTCGGTCTCTCCAACACCGT
CGACCTGCCCGAGCGAGTTATGCAGCCCCGCGTCCAGTCCCGCCTCTCCC
TCCGGCGCGTCCGCTTTGAGCCCTACTCGCACCTCCAGGTGGCGAGCATC
CTCAGGACAAGACTGGGAGGCCTGGTGCCGCAGGTGATCGACGACCAGTG
CATCCAAATGTGCAGTCGCAAGGTCGCGAACGTGTCGGGGGACCTCCGCA
AGGCCTTCCAGGTCTGTCGGTACGCCATCGACCTCAAACGCCGCTTCCTC
TCCTCTCCCTCTGTCCGCCCTTCAAGCCTCGCTGCTCTCGAGGAGACAGG
GGAGGGTGGCGCCCCCGCTTCTTCCCCCGGCGCCGACAGGAAGGAGGTCG
AAGAGAGGAAGCCCTTGGTGGATATAGCTCTCATCAATCAGGCGGCACGC
GAGTTGCAGGAGAAGCCGATTTTTAGGGCGGTGCAAGAGGGCTTGACCGA
CGCGCAGGTTTTAGTGCTCATCGTCATTATCCGCAGCACTGTAGAAAGCG
GGAGGTAGGGAAGGAGGGAAGGAGGGAGGAAGAAGAGGACGCACATGACG
TTGTGACAGCGGCAAGGCGCTACTTTTGTCCCCCTTTCCATGTCTCCCCC
TGTATTATTCTTGCAGAAAATTTACAGACGCGCTTTTGTCAAATGCTCGG
GCCAGGTCGCATTTCCTGCTGTCACCTCTTGCGCTCTCCTTACATTTCTT
TCCCTCTTGCGTGCACTGTCTCCCCTCGGATCGTACTTCCGGCAGGATAG
AAGCGGCCATGCCTGACGTATATCGACGGTGGCGTACAGCACTCTCCAAA
CTGGAAATTCACCCGTCCTCCCTCACTCCCTCCTACGGAGAAGCGCTCGA
AATTGCCCAACGCCTAGCCCTGGACGGCTTTCTGAGCCTGAGTAAGACCA
GACAATCCTGGGCGCCCTTTGTGACTTTGGAGCTTCAGGTAGGGAGGGAC
GAATCAGGAGAGGGCAACGGATCAAGCAAGACTGCGTGGCAAATGCAAAG
ATAAAGGGATGTGAATGAACGAAAGTCAACGCGAGATATCCTAAATATTG
CGTTGCAGGTTATTCAAATTTATCCTCTTCCTCCTGTTTCTCATTTCGCA
CTTTTTCCCAGTCTGCTGATGTAGCAGAAGCTGTACGCAAAGGGCGTTCG
CGCCAAATTTACGAGTTACTGCCCAAGGAACTGCGCGAATGGAATCGATG
AAGAAATGCTGGGTGAGCGTGTTAATAAGATGGGGAAAAATGCCGACTCA
AATCTGAGACGAATATGAAAGCATCTAAAAAAAGAAGAGAAGTCGATACT
ACATATCGAGTCGACATTAGTTTCCGGGCACAACGCT
back to top

protein sequence of rna5073

>rna5073-protein ID=rna5073-protein|Name=rna5073|organism=Nannochloropsis gaditana|type=polypeptide|length=88bp
MQVMERRSPYAKRFQDRKRMYLIDVMEKERGGRRGGKGSETVECSDSAYH
TFVGVRVPRWPYEERYGPFFDFVILEMGIQLLKGWRKI
back to top

mRNA from alignment at CM002465.1:41459..41828-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5073 ID=rna5073|Name=rna5073|organism=Nannochloropsis gaditana|type=mRNA|length=370bp|location=Sequence derived from alignment at CM002465.1:41459..41828- (Nannochloropsis gaditana)
ATGCAGGTGATGGAAAGAAGAAGTCCGTATGCAAAGAGGTTCCAGGATAG
GAAAAGGATGTATCTAATTGTACAGCTGAGATAAAAGAATCGAGAAAGGT
GCGGAGGGTCACCATGTCGCACACCGCGCTCTCTTGAGAGCTCTGAATGA
CGAGGATGAGTGGGGAATATAGGACGTGATGGAGAAGGAGCGAGGGGGGA
GGAGGGGGGGAAAGGGGAGCGAGACGGTGGAATGTAGTGATAGCGCATAC
CACACATTTGTGGGGGTGCGGGTACCTCGTTGGCCCTACGAGGAAAGATA
CGGCCCATTCTTTGACTTTGTCATCCTAGAGATGGGCATTCAACTTTTAA
AGGGATGGAGAAAGATTTAA
back to top

Coding sequence (CDS) from alignment at CM002465.1:41459..41828-

>rna5073 ID=rna5073|Name=rna5073|organism=Nannochloropsis gaditana|type=CDS|length=534bp|location=Sequence derived from alignment at CM002465.1:41459..41828- (Nannochloropsis gaditana)
GACGTGATGGAGAAGGAGCGAGGGGGGAGGAGGGGGGGAAAGGGGAGCGA
GACGGTGGAATGTAGTGATAGCGCATACCACACATTTGTGGGGGTGCGGG
TACCTCGTTGGCCCTACGAGGAAAGATACGGCCCATTCTTTGACTTTGTC
ATCCTAGAGATGGGCATTCAACTTTTAAAGGGATGGAGAAAGATTTAAAT
GCAGGTGATGGAAAGAAGAAGTCCGTATGCAAAGAGGTTCCAGGATAGGA
AAAGGATGTATCTAATTGACGTGATGGAGAAGGAGCGAGGGGGGAGGAGG
GGGGGAAAGGGGAGCGAGACGGTGGAATGTAGTGATAGCGCATACCACAC
ATTTGTGGGGGTGCGGGTACCTCGTTGGCCCTACGAGGAAAGATACGGCC
CATTCTTTGACTTTGTCATCCTAGAGATGGGCATTCAACTTTTAAAGGGA
TGGAGAAAGATTTAAATGCAGGTGATGGAAAGAAGAAGTCCGTATGCAAA
GAGGTTCCAGGATAGGAAAAGGATGTATCTAATT
back to top
Synonyms
Publications