rna5071, rna5071 (mRNA) Nannochloropsis gaditana

Overview
Namerna5071
Unique Namerna5071
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length679
Alignment locationCM002465.1:35390..36708 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101172g2.89.mrna
Orig protein idgnl|cribi|Naga_101172g2.89
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:35390..36708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101172g2gene4895Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5071rna5071-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25615.1cds5059Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5071 ID=rna5071|Name=rna5071|organism=Nannochloropsis gaditana|type=mRNA|length=679bp
CTCAGGCTTGCTGAATCCAAGAAGCGAGGCTTTGCGACCATTTAATCGAC
TGCAGCACCTCCCCACCTGCCTACCCCGAGATCGGTTCCGCATGTGGTGT
GCAAGGAACTAGTAGGAACATAACAGAGAGCTCACACAAGCAGCAGTGGA
ATTCCTGGGGAGAATGAAGCGGTCCTCAAAGACTAGGCCGGGTGGCCGTG
AGGAACGGCACGCGCAAGCACACGTAATTGGTCCCCTACGGCCCCTCTTC
TCCCTTCTCCTCCTTGCAGCAACATCGACTCAGGCGTTCCAGTATCCCTC
ACAATGGCAGCGTCGTCCTCTCCACCAGCCACATCCCAGGCAGCAAACAG
CGCCTGTCGCACCTCTGCGTGGTCTGGGAGCGTCTTCTACGCTATCTAGG
AGGAGTCGTTCCTCCTTCCCTCCTTTCTCCCCCTCCCCCTCCCCTCTCCC
CTTGGCCGCATCCTCCACCTCCTTCGAGCCCCTTCGTCCAGCTTATGACA
CCAACAGTACCTCGTCATCGTCATCTGCGGTATCTGCGCCTGCGGAAACC
GTCGACAAGAAGGGCAGCAAGGCAATGCCGACGGCCTTCCCCCCCCAAAT
GCTGGGCGAGGAGGAGCTTCTGGTGCGAGGGCCTCCTCCGCCCGCCGTGG
GGCCCATGACTAAGGTATCTTCAACTTAA
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protein sequence of rna5071

>rna5071-protein ID=rna5071-protein|Name=rna5071|organism=Nannochloropsis gaditana|type=polypeptide|length=96bp
MEPGVEGLEEKVEREEGKEEKEEVEEVDDGQPQLLNYIGEGLEGDLFYES
VRWQGQVFRMGDCVEVLLAGSGTEEAPRGFAEILWIWWASEGQEPS
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mRNA from alignment at CM002465.1:35390..36708+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5071 ID=rna5071|Name=rna5071|organism=Nannochloropsis gaditana|type=mRNA|length=1319bp|location=Sequence derived from alignment at CM002465.1:35390..36708+ (Nannochloropsis gaditana)
ATCACTTTTTTCGCAGCCTCTTATGTCCCTGGTCGTGGTAGGCACCTAAG
GGTTGCTTTGTTCCTTGTCGTTCTCACTGTCCATGTGACCGTGCAAGCAG
GTCGAAATGGAGTCATTTTCGAAAATTTATAAGATTATTTCAAAAAACAT
CCACTCAGATGGAACCAGGGGTGGAAGGACTAGAAGAaaaggtggaaagg
gaggaagggaaagaggagaaggaggaagttgagGAGGTCGATGACGGTCA
ACCGCAGCTTTTGAACTATAtaggggaggggctggagggggaccTATTCT
ACGAGTCGGTGCGCTGGCAGGTACGGAGGAGAAAGCTTGTTGCGAGGGGG
AGAGTTTTTcgaaagggagtggagggcaTTGacatgaagggaggggggag
aaaaaggaggagggaggagaggagtcaACGGCGGAATTTACTGCCATGTG
CCCGTCGCTTCATGAGTGCACGGGACAGATAGACTAATTAATGGCCCCTT
ATTGTCTTTCCCGTGAACTAGGGGCAGGTCTTTCGGATGGGAGACTGCGT
CGAGGTCCTGCTAGCGGGGTctgggacggaggaggctcCGCGCGGTTTTG
CGGAAATTTTGTGGATTTGGTGGGCCtcggagggacaggaggtgGGTAGC
GCCAttcaggagggcggaaggcgaAACGGGtcggagaagggcgggggccg
tggaaggaaagagggcgaccACGGAGAGAGCAGTCTCTGCCTAGGCCTGA
CTAACCCTTCTCTCTCCAAGCAGGCGGCCTCCGACTCCGAAGCCACCGAC
AACGACGACCGTGCTTCCTCTcagtccccttccccctccctctccgcctc
ctccgcgcctggGGAGGCCATGATGGAGGTCCGGTGGTACTGGACCCCGC
AGGAGCTGCTCCCcaaggtggaggacagggccaAGTGCCTGCTGCGGGAG
CTCTTTGAGAGCGACCGGGTCGACGAAATCCCCGTGGTGCGtccgtcccc
ctcttttgcATGTCTTGCCCTTCGCGACCTCCTGCcgctctcttttctct
cccctctctcctgcctcccctcctcccctccctccccgtcttcctcacgc
gcctcccctccccgcgttCGACGGCGCAGGAGTCCATCAACGACCACATC
CAAGTCCTGGCGCCTTTCGCAGGGCGGGCaaagagggacggaggcaaagt
cccggagggagcgggggaggaaggggatggagcgggggaggaagggaagg
gagcgggggaggaagtggaagtcTACGTGTGTCGCCGCTTCTATCACACC
ACCCGGGCAGCCTTCTTGA
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Coding sequence (CDS) from alignment at CM002465.1:35390..36708+

>rna5071 ID=rna5071|Name=rna5071|organism=Nannochloropsis gaditana|type=CDS|length=873bp|location=Sequence derived from alignment at CM002465.1:35390..36708+ (Nannochloropsis gaditana)
ATGGAACCAGGGGTGGAAGGACTAGAAGAaaaggtggaaagggaggaagg
gaaagaggagaaggaggaagttgagGAGGTCGATGACGGTCAACCGCAGC
TTTTGAACTATAtaggggaggggctggagggggaccTATTCTACGAGTCG
GTGCGCTGGCAGGGGCAGGTCTTTCGGATGGGAGACTGCGTCGAGGTCCT
GCTAGCGGGGTctgggacggaggaggctcCGCGCGGTTTTGCGGAAATTT
TGTGGATTTGGTGGGCCtcggagggacaggagCCTTCTTGAATGGAACCA
GGGGTGGAAGGACTAGAAGAaaaggtggaaagggaggaagggaaagagga
gaaggaggaagttgagGAGGTCGATGACGGTCAACCGCAGCTTTTGAACT
ATAtaggggaggggctggagggggaccTATTCTACGAGTCGGTGCGCTGG
CAGGGGCAGGTCTTTCGGATGGGAGACTGCGTCGAGGTCCTGCTAGCGGG
GTctgggacggaggaggctcCGCGCGGTTTTGCGGAAATTTTGTGGATTT
GGTGGGCCtcggagggacaggagCCTTCTTGAATGGAACCAGGGGTGGAA
GGACTAGAAGAaaaggtggaaagggaggaagggaaagaggagaaggagga
agttgagGAGGTCGATGACGGTCAACCGCAGCTTTTGAACTATAtagggg
aggggctggagggggaccTATTCTACGAGTCGGTGCGCTGGCAGGGGCAG
GTCTTTCGGATGGGAGACTGCGTCGAGGTCCTGCTAGCGGGGTctgggac
ggaggaggctcCGCGCGGTTTTGCGGAAATTTTGTGGATTTGGTGGGCCt
cggagggacaggagCCTTCTTGA
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Synonyms
Publications