rna5063, rna5063 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5063
Unique Name	rna5063
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2182
Alignment location	CM002465.1:11042..12477 -

Link to JBrowse

Properties


Property Name	Value
Product	2-acylglycerol o-acyltransferase 2
Orig transcript id	gnl\|cribi\|Naga_100251g8.7591.mrna
Orig protein id	gnl\|cribi\|Naga_100251g8.7591
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:11042..12477 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100251g8	gene4887	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5063	rna5063-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25622.1	cds5051	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:11042..12477-
coding sequence from alignment at CM002465.1:11042..12477-

mRNA sequence

>rna5063 ID=rna5063|Name=rna5063|organism=Nannochloropsis gaditana|type=mRNA|length=2182bp
CGTAGACTTGACAGCGTTCAAAATGTAGGCCCCATCGCGGGGGCATAGCA
AAGCAAAAACGATACCCGGAGCCGTGTCACATGTACTCGTCGAGCACTCA
CGCTGCTCTTGCTAATTTTGCTATGACATGAACATATGACAGCTGCAGCT
ATCAAGCAATGGCAGGTCGCGTAGTGAGGATCTCGATCTTGTCCGTTCTA
CTTTTCCATTGCGCTCCCTGTTTTATTCCAACCTCCTCCCTCGCCGTGGC
GCATCCTGACCTGCAACCATGGTCAGATATTGTTACTCAAGCAATGGTCG
GATACACCCTGCGCAGCACAGAAAACCCCATGGAGCCTCTAAATCCGTTG
GAGAATCTAATGGTAGGCGGGCGCATCCTGTCCATCTTGCATCTTTCTCA
GTGGCAGGCCATCAACGAGGTGCTCGCCGCTACAAACTTCTCTTCACTCT
CAGCTGCAATTGAACAGCTCCCGAGTCTACACCCCTTACTCATAAACACT
GTAGCCGCTGCAGGCAATCATGTTCTCACCAATCTTCTACCTGATGGCGC
AGCGCAAGCCGAGATTTCTGCTCTCTGTGCTGCCCAAGCCAGGGAGTCAC
GACTTCCTTCTGGCACAGGAGAAGACAGTGGTGCCGCAGAGTCCTCTGGT
CCGACAGAAGCTGACCTGGCATTAGCCAAACGGCTGGGAGAAGCAACAGG
AAAAGCAGTGTTGGAATCTCGCAGGGATGATGGAACAAGTAGGAGCATCC
CTCCCTACGTGGGCGCTACCACCGCTTCAGGTGTGACTGGGGCACGAGAC
GACAAGGGACGCTGGCGCCCAACTCCTCCCGCATTTTCTCCCGGGGGCGC
ACGACAGTGGAAAGACGCGACGCCGTACGTGCTGAGTAGCCCTGGAGAGC
TCCGCCCTCCCCCCCCTCCCGACCTGCGCTCGCCCTCCTACCAGGTGTCC
TACATGGAGGTAGCGACCGTCGGGAACCGCAGCAGCGACGAACGTCAGCC
CTCGGAAACAGAGAGTGCCATATTTTGGACAGCGCAGCCCGACGCCCTCC
TCTTCGCGGTCGTGGGGCAGGTCACAGAGGAGATGGACCTTTTGGAGGCC
ACCCGCACCTACGCCCTGGCCTCGGTGGCGGCTGTGGATGCACGAGTCGC
CATCATGGATGGCAAGTACTTTTACAGCAGCTGGCGGCCGGTCACAGCGC
TGCCGTTGGGAAACGGGGTAGGCCTGCCGGCTTTCCCTGACTTCGCGCCT
TACTTGACCACACCGCCCACGCCGGAGTACCCCTCAGGACACGCTGTGCA
CGGGGAGGCCATCGTGGAGGTCCTGCGACGGGCCCGGGGAGGGGGAAGGG
GTCTGGGCGGGGAGAAAGAACGGGCGGCGGATGCGTGTGATGTCGTGCTG
ACGACGCCGACTGTGCAGGGTGAAAGCGGAGGGGGAGCGAGGCGGGTGGT
GAAGGCGGAGAAGCAGGGGAGAGGAGGGAAGGTGGAAGGGAGGATGAGTG
GGGACCCTCCAGGGCAGGTGGCACCCCAGCCTATGGTGGTGACGCGTCGG
TACGCCTCCCTCAGTGAGGTATCGGAAGACCTGGCGCTTTCGCGGATTTT
CGGCGGGATCCACTACCGTTTCACGGCGGAGCAGAGTCTGGAAATGGGCG
TGAGGGTAGGTCGGCGGGTGGTGGAGGGCTTTGACGCCAAGTACACGAAG
CTGACGAGGGAAGAGGACGACAGCGCGCAGGGAGCGCGATTGGAGAGTGG
AGGCGGAAAGCGAGGGCTGAGGGTGGGGGGAGAGATGGGGACAGGGGGGG
GGGAGGCGGTGTCGAGGAGGAGCCAGGAGAGGGGAAGCTGTCCGCTGCAC
CTCGTGTCGAAAAGTGAGGCCGCTGGGAGGAATGAAGGAAAACAGAAGAT
AGAAGGAAGAAGGGAGGAAAGTAAGCCAGATATAGAAAAAACGAAAGGAA
GTGGCGAGAGACCTGCAGGCCCCCTGGGCGGGGGGGAGGCGGGGCCGACA
CAGCAAGGATGAGAGCGCCCTCGAGCCCGAGGCCCCTGTCTGCACTCGAA
GTACTTTGTGCTTGTTCTTTGCATGAGACTATCTTATCGTGCGCACGCCT
CATCTGACCTCCAGCCGGGCTCCTGGACCCCTGCCCCCGAACTGGACCTT
GTGGGTCTCGAACAGCGCGGTCAGCGCCTCCA

protein sequence of rna5063

>rna5063-protein ID=rna5063-protein|Name=rna5063|organism=Nannochloropsis gaditana|type=polypeptide|length=357bp
MVCPLRSLVRDYRRTQGLVTSPHRSHGPDMSFKCKPSQKPNKQFWRYASF
LAFIATFLLVPSTTSWASALHRACYMAYVMTYLDTSYRDGSRAWPWFQRL
PVWRLYCRYIKGQVITTVPLDPHRQYIFATHPHGIATWNHFLTMTDGCRF
LSRIYPRPRLDLGATVLFFIPLVKEVLLWLGCVDAGAATANAVLERGFSS
LIYVGGEKEQILTERGRDLVVVLPRKGFCKLALRYDCPIVPAYAFGENDL
YRTFKYFKGLQLWVARALKLACPPCWGFPLLPFLPLPAPVTVVMGAPLSP
RREGRAGGDVGGSRGGEPTREEVEDLHARYVEALTALFETHKVQFGGRGP
GARLEVR

mRNA from alignment at CM002465.1:11042..12477-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5063 ID=rna5063|Name=rna5063|organism=Nannochloropsis gaditana|type=mRNA|length=1436bp|location=Sequence derived from alignment at CM002465.1:11042..12477- (Nannochloropsis gaditana)
ATGGTCTGTCCCTTACGTTCCCTCGTACGCGACTACAGGAGGACGCAGGG
TCTGGTGACCTCCCCGCATCGCTCTCACGGCCCCGACATGTCCTTCAAAT
GCAAGCCATCCCAGAAACCCAACAAACAATTTTGGCGCTATGCAAGCTTC
CTGGCCTTCATTGCCACTTTTCTACTTGTCCCATCTACTACCTCGTGGGC
CAGTGCGCTCCATCGAGCCTGCTACATGGCGTACGTGATGACCTACCTAG
ACACGAGTTACAGAGATGGCTCGCGAGCCTGGCCCTGGTTCCAGCGCCTG
CCAGTGTGGCGTCTTTATTGTAGATACATCAAGGTATTAGAAAGATTTAT
GTGACGAAGGATGTGCTGATTTAGGGGATGAAATGGACTAGGAAGGGACT
TGCATGTTGATTATATACTTTGAAGCCGTTGAGCCGACCCTTGGAATCCC
TATTTGACACATGCCTTTCCCTTTCTTTCCTGAGTCCCCTGGATATCCTT
ATCTAAAAATCAATGATACCTTTTTTTCGCTGCCTACGTTTACAATTTGG
GTGCGTCGATCTGGATTTTCCATGGCCATCCTCTCCCTCATCCTCTCTCC
GCCCGCTTGACCGATACAGGGCCAGGTCATCACCACCGTGCCTCTCGATC
CTCACCGCCAGTACATTTTTGCCACCCATCCCCACGGGATTGCCACCTGG
AACCACTTCCTGACCATGACGGACGGCTGCCGCTTCCTCTCCAGGATCTA
CCCCCGCCCGCGCCTCGACCTCGGGGCCACTGTCCTTTTCTTCATTCCCC
TGGTCAAGGAGGTTTTGCTCTGGCTCGGATGCGTGGATGCCGGCGCCGCC
ACGGCAAATGCTGTACTCGAGCGAGGCTTCTCCTCTCTCATCTACGTGGG
GGGGGAGAAAGAGCAGATCCTCACCGAGCGAGGGAGGGACCTGGTGGTGG
TCCTGCCTCGCAAGGGATTCTGCAAGCTCGCCCTCCGCTACGACTGCCCC
ATTGTCCCCGCGTACGCCTTCGGAGAAAACGACCTCTACCGGACCTTTAA
ATATTTCAAGGGCCTCCAGCTCTGGGTGGCGCGCGCGCTCAAGCTGGCCT
GTCCCCCGTGCTGGGGCTTCCCGCTCCTCCCCTTCCTGCCCCTGCCCGCG
CCCGTGACCGTGGTGATGGGCGCGCCGCTCTCCCCCAGGAGGGAGGGAAG
GGCGGGGGGGGACGTGGGTGGGAGCAGGGGGGGGGAGCCGACGCGGGAGG
AGGTGGAGGATCTGCACGCGCGCTACGTGGAGGCGCTGACCGCGCTGTTC
GAGACCCACAAGGTCCAGTTCGGGGGCAGGGGTCCAGGAGCCCGGCTGGA
GGTCAGATGAGGCGTGCGCACGATAAGATAGTCTCATGCAAAGAACAAGC
ACAAAGTACTTCGAGTGCAGACAGGGGCCTCGGGCT

Coding sequence (CDS) from alignment at CM002465.1:11042..12477-

>rna5063 ID=rna5063|Name=rna5063|organism=Nannochloropsis gaditana|type=CDS|length=2148bp|location=Sequence derived from alignment at CM002465.1:11042..12477- (Nannochloropsis gaditana)
GGCCAGGTCATCACCACCGTGCCTCTCGATCCTCACCGCCAGTACATTTT
TGCCACCCATCCCCACGGGATTGCCACCTGGAACCACTTCCTGACCATGA
CGGACGGCTGCCGCTTCCTCTCCAGGATCTACCCCCGCCCGCGCCTCGAC
CTCGGGGCCACTGTCCTTTTCTTCATTCCCCTGGTCAAGGAGGTTTTGCT
CTGGCTCGGATGCGTGGATGCCGGCGCCGCCACGGCAAATGCTGTACTCG
AGCGAGGCTTCTCCTCTCTCATCTACGTGGGGGGGGAGAAAGAGCAGATC
CTCACCGAGCGAGGGAGGGACCTGGTGGTGGTCCTGCCTCGCAAGGGATT
CTGCAAGCTCGCCCTCCGCTACGACTGCCCCATTGTCCCCGCGTACGCCT
TCGGAGAAAACGACCTCTACCGGACCTTTAAATATTTCAAGGGCCTCCAG
CTCTGGGTGGCGCGCGCGCTCAAGCTGGCCTGTCCCCCGTGCTGGGGCTT
CCCGCTCCTCCCCTTCCTGCCCCTGCCCGCGCCCGTGACCGTGGTGATGG
GCGCGCCGCTCTCCCCCAGGAGGGAGGGAAGGGCGGGGGGGGACGTGGGT
GGGAGCAGGGGGGGGGAGCCGACGCGGGAGGAGGTGGAGGATCTGCACGC
GCGCTACGTGGAGGCGCTGACCGCGCTGTTCGAGACCCACAAGGTCCAGT
TCGGGGGCAGGGGTCCAGGAGCCCGGCTGGAGGTCAGATGAATGGTCTGT
CCCTTACGTTCCCTCGTACGCGACTACAGGAGGACGCAGGGTCTGGTGAC
CTCCCCGCATCGCTCTCACGGCCCCGACATGTCCTTCAAATGCAAGCCAT
CCCAGAAACCCAACAAACAATTTTGGCGCTATGCAAGCTTCCTGGCCTTC
ATTGCCACTTTTCTACTTGTCCCATCTACTACCTCGTGGGCCAGTGCGCT
CCATCGAGCCTGCTACATGGCGTACGTGATGACCTACCTAGACACGAGTT
ACAGAGATGGCTCGCGAGCCTGGCCCTGGTTCCAGCGCCTGCCAGTGTGG
CGTCTTTATTGTAGATACATCAAGGGCCAGGTCATCACCACCGTGCCTCT
CGATCCTCACCGCCAGTACATTTTTGCCACCCATCCCCACGGGATTGCCA
CCTGGAACCACTTCCTGACCATGACGGACGGCTGCCGCTTCCTCTCCAGG
ATCTACCCCCGCCCGCGCCTCGACCTCGGGGCCACTGTCCTTTTCTTCAT
TCCCCTGGTCAAGGAGGTTTTGCTCTGGCTCGGATGCGTGGATGCCGGCG
CCGCCACGGCAAATGCTGTACTCGAGCGAGGCTTCTCCTCTCTCATCTAC
GTGGGGGGGGAGAAAGAGCAGATCCTCACCGAGCGAGGGAGGGACCTGGT
GGTGGTCCTGCCTCGCAAGGGATTCTGCAAGCTCGCCCTCCGCTACGACT
GCCCCATTGTCCCCGCGTACGCCTTCGGAGAAAACGACCTCTACCGGACC
TTTAAATATTTCAAGGGCCTCCAGCTCTGGGTGGCGCGCGCGCTCAAGCT
GGCCTGTCCCCCGTGCTGGGGCTTCCCGCTCCTCCCCTTCCTGCCCCTGC
CCGCGCCCGTGACCGTGGTGATGGGCGCGCCGCTCTCCCCCAGGAGGGAG
GGAAGGGCGGGGGGGGACGTGGGTGGGAGCAGGGGGGGGGAGCCGACGCG
GGAGGAGGTGGAGGATCTGCACGCGCGCTACGTGGAGGCGCTGACCGCGC
TGTTCGAGACCCACAAGGTCCAGTTCGGGGGCAGGGGTCCAGGAGCCCGG
CTGGAGGTCAGATGAATGGTCTGTCCCTTACGTTCCCTCGTACGCGACTA
CAGGAGGACGCAGGGTCTGGTGACCTCCCCGCATCGCTCTCACGGCCCCG
ACATGTCCTTCAAATGCAAGCCATCCCAGAAACCCAACAAACAATTTTGG
CGCTATGCAAGCTTCCTGGCCTTCATTGCCACTTTTCTACTTGTCCCATC
TACTACCTCGTGGGCCAGTGCGCTCCATCGAGCCTGCTACATGGCGTACG
TGATGACCTACCTAGACACGAGTTACAGAGATGGCTCGCGAGCCTGGCCC
TGGTTCCAGCGCCTGCCAGTGTGGCGTCTTTATTGTAGATACATCAAG

Synonyms

Publications