rna505, rna505 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna505
Unique Name	rna505
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1558
Alignment location	CM002455.1:1270367..1272405 +

Link to JBrowse

Properties


Property Name	Value
Product	ankyrin repeat family protein
Orig transcript id	gnl\|cribi\|Naga_100096g14.968.mrna
Orig protein id	gnl\|cribi\|Naga_100096g14.968
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1270367..1272405 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100096g14	gene486	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna505	rna505-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30160.1	cds505	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1270367..1272405+
coding sequence from alignment at CM002455.1:1270367..1272405+

mRNA sequence

>rna505 ID=rna505|Name=rna505|organism=Nannochloropsis gaditana|type=mRNA|length=1558bp
GCAGCGGCGTTGACATCGCTGCCATGCCGAAGCAAAGTGCGAACGGCCTC
CACGTCGTCGTGCCCGGCAACATGGTGCAAGGCACGTGCACCGTCGTGTT
CATCATCCTTCACGGGGCCATGATTGGGGTCTGCTCCCCTATCCAGCAAG
ACCTCAAGCAAATCTTTGCGACTTACTCGACTTGTATTTCCATCGCCACC
GCCAGCGGCGGCTAGAATCAAAGGTGTGTCACCCTTATCGTCTTCCCAGC
TTACACCCTCAGGCGCCAGGTCCAAAATATGTCGAACCATCTCCACTTGA
CCCGCATGACAAGCAAAATGCAGCGCTGTGCGACCATTTCCATCCTTGTA
TTGCCGCAAAATAGCAGCGGAGTCGTCCTCTAAGTCGGGATGCCGGTCCT
TTTCTTCCTGAAGTAAGGAATCCAGCTTCGCAGCATCGTCGCTAGCCGCC
GCGTCCACTAGCTGCGTCAGAAACGTCCGAGCATGTAAAGCCGCTTGACC
CTGACTAGCTTTATCTTGGTCGTCTTCATTATTATCTTGTGATGTGTGGG
ACGAGCTGAGGGAGTATAGGGAATGTTGACGATGGATTAGACTCCGCATT
ACACGAGAGAGGAGGTTAAGAAAGGTGCCTCGCACGCACTGCATACCTGG
TTGCCATGCTCGTAAATTTCCCGAGGGTCAGCTCAAGCACCGCACCTGTC
TGGAAGTATCAAGTTGTGAGTCGAGGAACGTAAGAGTGCCGCCCTGGTCC
CATACCATTCGAGAAAAAGGGGCTCCTGCAGATCGTGTTGGAACATCGAT
GGAGCTCACACTGCGTCCTGTCGCCTGGGGGGCAGCAAAAACAAAGCAAG
ATCCACGCGTTAACTGGGAGGACAATCCTCCATTCTCGGTCTGATCCCGT
CACTCACTATCTCTGTGATACAGAGAGGTGTGCGGATTGTGCTGACTTCG
TACCTTCCCTTGTTTTTTCAGGTGGTTGATAAAGTTGCCTCGGTACGTCC
TTGTACGCCCCCTCCCCACCTGATTTCCACCGTCCGTCTGTGTGCACAAA
CATGATGGCCGGAGCAGCGCGACGATCCTCGCACACAGCATTAGCACTAG
CATTCGTACTCACGACATTTGTAGCGCAAGCATTTCTGGCCCCAAAGACA
CAAGGCCTGCCTATCGCAAGAAGATCTACCCCCGCTGCCTCTTGTGGGCC
CTTACAAGCCTTTGAAAGCGACTGGTTTAGCACGGCTGCTTCCTCTGTCG
CATCTCCCCCTTCCTCCACGACCCTCATCGCGGATTATTTTTCCACCGTG
GACGAAATTGCGGCCAGCATTGGCAACACCCCGTGGCTACAGTTTTTCAT
CCCCACGGCTGTCGGAATGTCGATCTCTTTGGCCATCGTTTTCTCCCTTT
ACCTCGCCGCGCAGCCCTACGAACCCCCTGAACGGAAATAGGCTTGGTCT
CTGGCGTGAATGGGTTGACATGTGATAGGAATTGGGCCATGTTAGACGCG
AGTGCCAGGTGGTTGAGCGGGATGAGAGAAAGAACCCAACAACGAAGTAC
GTGCATGT

protein sequence of rna505

>rna505-protein ID=rna505-protein|Name=rna505|organism=Nannochloropsis gaditana|type=polypeptide|length=506bp
MATSSSHTSQDNNEDDQDKASQGQAALHARTFLTQLVDAAASDDAAKLDS
LLQEEKDRHPDLEDDSAAILRQYKDGNGRTALHFACHAGQVEMVRHILDL
APEGVSWEDDKGDTPLILAAAGGGDGNTSRVSRKDLLEVLLDRGADPNHG
PVKDDEHDGARALHHVAGHDDVEAVRTLLRHGSDVNAAAGTGTPLHWASA
EGAKASLEALIETGGDVDAVNDQGLSPIILAAAHGCGGCVALLAKGGADV
GFILSGAGLTALHMMAEYGSLDGVQAILATGAPGVACAVQESENGKPIHL
AAWAAHKDVVETLLPYSDVKETVEELMSWGRARAAAYEEEKGRSSDHTML
QPEQDSRHSSGVHLPPPAASAADVETALRLKETANRHYVAGEYGQALPLY
DESIGLNGRDSALWSNRSGCLLKLGRPEDALRDAETARALKPGWPKACFR
MAEARLALKRYEDAALAAYEGIQLDSGNQALHNILKTAIELGRAEHQKKV
KEREGR

mRNA from alignment at CM002455.1:1270367..1272405+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna505 ID=rna505|Name=rna505|organism=Nannochloropsis gaditana|type=mRNA|length=2039bp|location=Sequence derived from alignment at CM002455.1:1270367..1272405+ (Nannochloropsis gaditana)
AAatcaggtggggagggggcgtaCAAGGACGTACCGAGGCAACTTTATCA
ACCACCTGAAAAAACAAGGGAAGGTACGAAGTCAGCACAATCCGCACACC
TCTCTGTATCACAGAGATAGTGAGTGACGGGATCAGACCGAGAATGGAGG
ATTGTCCTCCCAGTTAACGCGTGGATCTTGCTTTGTTTTTGCTGCCCCCC
AGGCGACAGGACGCAGTGTGAGCTCCATCGATGTTCCAACACGATCTGCA
GGAGCCCCTTTTTCTCGAATGGTATGGGACCAGGGCGGCACTCTTACGTT
CCTCGACTCACAACTTGATACTTCCAGACAGGTGCGGTGCTTGAGCTGAC
CCTCGGGAAATTTACGAGCATGGCAACCAGGTATGCAGTGCGTGCGAGGC
ACCTTTcttaacctcctctctcgtGTAATGCGGAGTCTAATCCATCGTCA
ACATTCCCTATACTCCCTCAGCTCGTCCCACACATCACAAGATAATAATG
AAGACGACCAAGATAAAGCTAGTCAGGGTCAAGCGGCTTTACATGCTCGG
ACGTTTCTGACGCAGCTAGTGGACGCGGCGGCTAGCGACGATGCTGCGAA
GCTGGATTCCTTACttcaggaagaaaaggaccGGCATCCCGACTTAGAGG
ACGACTCCGCTGCTATTTTGCGGCAATACAAGGATGGAAATGGTCGCACA
GCGCTGCATTTTGCTTGTCATGCGGGTCAAGTGGAGATGGTTCGACATAT
TTTGGACCTGGCGCCTGAGGGTGTAAGCTGGGAAGACGATAAGGGTGACA
CACCTTTGATTCTAGCCGCCGCtggcggtggcgatggaAATACAAGTCGA
GTAAGTCGCAAAGATTTGCTTGAGGTCTTGCTGGATAGGGGAGCAGACCC
CAATCATGGCCCCGTGAAGGATGATGAACACGACGGTGCACGTGCCTTGC
ACCATGTTGCCGGGCacgacgacgtggaggccgtTCGCACTTTGCTTCGG
CATGGCAGCGATGTCAACGCCGCTGCAGGCACCGGCACACCGTTGCACTG
GGCGAGTGCAGAAGGTGCGAAAGCGTCCTTGGAAGCCCTGATCGAGACGG
GAGGCGATGTGGACGCAGTGAACGATCAGGGACTGTCTCCCATCATCCTC
GCAGCCGCTCACGGCTGCGGCGGTTGCGTTGCGCTGCTTGCCAAGGGTGG
TGCCGATGTCGGATTTATTTTGTCGGGTGCGGGGTTGACGGCGCTGCACA
TGATGGCAGAGTATGGATCCTTGGATGGCGTTCAGGCGATATTAGCCACG
GGGGCACCCGGGGTGGCCTGTGCAGTGCAGGAGAGTGAAAATGGCAAGCC
GATCCATCTAGCTGCATGGGCCGCACACAAagacgtggtggagaccTTGC
TCCCCTATTCGGACGTCAAGGAGACGGTTGAGGAACTCATGagctggggg
cgggcgagggcagcggcctacgaagaggagaaaggtagGTCTTCCGATCA
CACCATGCTACAACCCGAACAAGATTCCAGACACAGCAGTGGAGTGCACT
TACCCCCCCCCGCAGCCTCGGCGGCGGACGTGGAAACGGCGTTGCGACTG
AAAGAGACGGCGAACCGTCATTACGTTGCTGGCGAGTACGGTCAAGCCCT
TCCCTTGTATGACGAATCCATCGGGCTGAACGGGCGGGACTCTGCCTTGT
GGAGCAACCGTTCTGGGTGCCTGTTGAAGCTGGGACGTCCTGAAGACGCA
TTGAGGGACGCAGAAACGGCCCGGGCACTGAAGCCCGGCTGGCCAAAAGC
CTGTTTTCGCATGGCGGAGGCACGCTTAGCACTGAAGAGGTACGAAGATG
CGGCCTTGGCAGCCTATGAAGGTATCCAGCTGGACTCGGGGAACCAGGCG
CTGCACAACATACTGAAAACCGCGATAGAGCTCGGAAGGGCGGAGCACCA
GAAGAAAGTCAAAGAACGGGAAGGGAGATAATGGAACTTGGAAAGCGGGG
GATAAAACATCGAACACTCAAAACATTGTAACAAGCAGA

Coding sequence (CDS) from alignment at CM002455.1:1270367..1272405+

>rna505 ID=rna505|Name=rna505|organism=Nannochloropsis gaditana|type=CDS|length=3042bp|location=Sequence derived from alignment at CM002455.1:1270367..1272405+ (Nannochloropsis gaditana)
ATGGCAACCAGCTCGTCCCACACATCACAAGATAATAATGAAGACGACCA
AGATAAAGCTAGTCAGGGTCAAGCGGCTTTACATGCTCGGACGTTTCTGA
CGCAGCTAGTGGACGCGGCGGCTAGCGACGATGCTGCGAAGCTGGATTCC
TTACttcaggaagaaaaggaccGGCATCCCGACTTAGAGGACGACTCCGC
TGCTATTTTGCGGCAATACAAGGATGGAAATGGTCGCACAGCGCTGCATT
TTGCTTGTCATGCGGGTCAAGTGGAGATGGTTCGACATATTTTGGACCTG
GCGCCTGAGGGTGTAAGCTGGGAAGACGATAAGGGTGACACACCTTTGAT
TCTAGCCGCCGCtggcggtggcgatggaAATACAAGTCGAGTAAGTCGCA
AAGATTTGCTTGAGGTCTTGCTGGATAGGGGAGCAGACCCCAATCATGGC
CCCGTGAAGGATGATGAACACGACGGTGCACGTGCCTTGCACCATGTTGC
CGGGCacgacgacgtggaggccgtTCGCACTTTGCTTCGGCATGGCAGCG
ATGTCAACGCCGCTGCAGGCACCGGCACACCGTTGCACTGGGCGAGTGCA
GAAGGTGCGAAAGCGTCCTTGGAAGCCCTGATCGAGACGGGAGGCGATGT
GGACGCAGTGAACGATCAGGGACTGTCTCCCATCATCCTCGCAGCCGCTC
ACGGCTGCGGCGGTTGCGTTGCGCTGCTTGCCAAGGGTGGTGCCGATGTC
GGATTTATTTTGTCGGGTGCGGGGTTGACGGCGCTGCACATGATGGCAGA
GTATGGATCCTTGGATGGCGTTCAGGCGATATTAGCCACGGGGGCACCCG
GGGTGGCCTGTGCAGTGCAGGAGAGTGAAAATGGCAAGCCGATCCATCTA
GCTGCATGGGCCGCACACAAagacgtggtggagaccTTGCTCCCCTATTC
GGACGTCAAGGAGACGGTTGAGGAACTCATGagctgggggcgggcgaggg
cagcggcctacgaagaggagaaaggtagGTCTTCCGATCACACCATGCTA
CAACCCGAACAAGATTCCAGACACAGCAGTGGAGTGCACTTACCCCCCCC
CGCAGCCTCGGCGGCGGACGTGGAAACGGCGTTGCGACTGAAAGAGACGG
CGAACCGTCATTACGTTGCTGGCGAGTACGGTCAAGCCCTTCCCTTGTAT
GACGAATCCATCGGGCTGAACGGGCGGGACTCTGCCTTGTGGAGCAACCG
TTCTGGGTGCCTGTTGAAGCTGGGACGTCCTGAAGACGCATTGAGGGACG
CAGAAACGGCCCGGGCACTGAAGCCCGGCTGGCCAAAAGCCTGTTTTCGC
ATGGCGGAGGCACGCTTAGCACTGAAGAGGTACGAAGATGCGGCCTTGGC
AGCCTATGAAGGTATCCAGCTGGACTCGGGGAACCAGGCGCTGCACAACA
TACTGAAAACCGCGATAGAGCTCGGAAGGGCGGAGCACCAGAAGAAAGTC
AAAGAACGGGAAGGGAGATAAATGGCAACCAGCTCGTCCCACACATCACA
AGATAATAATGAAGACGACCAAGATAAAGCTAGTCAGGGTCAAGCGGCTT
TACATGCTCGGACGTTTCTGACGCAGCTAGTGGACGCGGCGGCTAGCGAC
GATGCTGCGAAGCTGGATTCCTTACttcaggaagaaaaggaccGGCATCC
CGACTTAGAGGACGACTCCGCTGCTATTTTGCGGCAATACAAGGATGGAA
ATGGTCGCACAGCGCTGCATTTTGCTTGTCATGCGGGTCAAGTGGAGATG
GTTCGACATATTTTGGACCTGGCGCCTGAGGGTGTAAGCTGGGAAGACGA
TAAGGGTGACACACCTTTGATTCTAGCCGCCGCtggcggtggcgatggaA
ATACAAGTCGAGTAAGTCGCAAAGATTTGCTTGAGGTCTTGCTGGATAGG
GGAGCAGACCCCAATCATGGCCCCGTGAAGGATGATGAACACGACGGTGC
ACGTGCCTTGCACCATGTTGCCGGGCacgacgacgtggaggccgtTCGCA
CTTTGCTTCGGCATGGCAGCGATGTCAACGCCGCTGCAGGCACCGGCACA
CCGTTGCACTGGGCGAGTGCAGAAGGTGCGAAAGCGTCCTTGGAAGCCCT
GATCGAGACGGGAGGCGATGTGGACGCAGTGAACGATCAGGGACTGTCTC
CCATCATCCTCGCAGCCGCTCACGGCTGCGGCGGTTGCGTTGCGCTGCTT
GCCAAGGGTGGTGCCGATGTCGGATTTATTTTGTCGGGTGCGGGGTTGAC
GGCGCTGCACATGATGGCAGAGTATGGATCCTTGGATGGCGTTCAGGCGA
TATTAGCCACGGGGGCACCCGGGGTGGCCTGTGCAGTGCAGGAGAGTGAA
AATGGCAAGCCGATCCATCTAGCTGCATGGGCCGCACACAAagacgtggt
ggagaccTTGCTCCCCTATTCGGACGTCAAGGAGACGGTTGAGGAACTCA
TGagctgggggcgggcgagggcagcggcctacgaagaggagaaaggtagG
TCTTCCGATCACACCATGCTACAACCCGAACAAGATTCCAGACACAGCAG
TGGAGTGCACTTACCCCCCCCCGCAGCCTCGGCGGCGGACGTGGAAACGG
CGTTGCGACTGAAAGAGACGGCGAACCGTCATTACGTTGCTGGCGAGTAC
GGTCAAGCCCTTCCCTTGTATGACGAATCCATCGGGCTGAACGGGCGGGA
CTCTGCCTTGTGGAGCAACCGTTCTGGGTGCCTGTTGAAGCTGGGACGTC
CTGAAGACGCATTGAGGGACGCAGAAACGGCCCGGGCACTGAAGCCCGGC
TGGCCAAAAGCCTGTTTTCGCATGGCGGAGGCACGCTTAGCACTGAAGAG
GTACGAAGATGCGGCCTTGGCAGCCTATGAAGGTATCCAGCTGGACTCGG
GGAACCAGGCGCTGCACAACATACTGAAAACCGCGATAGAGCTCGGAAGG
GCGGAGCACCAGAAGAAAGTCAAAGAACGGGAAGGGAGATAA

Synonyms

Publications