rna5042, rna5042 (mRNA) Nannochloropsis gaditana

Overview
Namerna5042
Unique Namerna5042
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1808
Alignment locationCM002464.1:1028405..1033157 +

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Properties
Property NameValue
Productcoatomer copii
Orig transcript idgnl|cribi|Naga_100037g10.10729.mrna
Orig protein idgnl|cribi|Naga_100037g10.10729
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:1028405..1033157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100037g10gene4869Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5042rna5042-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25640.1cds5030Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5042 ID=rna5042|Name=rna5042|organism=Nannochloropsis gaditana|type=mRNA|length=1808bp
TAGGCGCGTGGGTACCTCGGGTGAGGACAATGCTGAGATGTACCGTGTTA
AGTCCATTTTGGGGCCCAGGGCCCTCGGATCAACCGGGGAGAGAGATGAT
ATCATACTGTCCGCTTTGTCGCGGGACTGATTGCCTCGCAGCCGCCTTTC
ATCCTGAGCGGAGTACTCACAAATCGCCGTCCAACTCCACGATGATGCAT
TGAAACCACCCACACTCTGCTCACAGGCGCTTGAAAAGAGCGGGAAGACC
CAGGAAACTCAAACGAGACTGGGTCGCAGCCATAGAAATCCTTTTTGATA
CTCAAAGAAGCAAGGCACCATTCAGCATCTAGCCTCTTTTCTCACGCGGC
GCCCGACAAGCAGCGCCACCTCTTCCAACGAAGAGCAGCAGGCACCTGCA
CCGGCACCAGCTCCCTCCGGATCAGACACAGGAGGTGGTCAATCCCAAGC
GGCGCAAGGGAGGGAAGGCGGGGGGGAAGGGGGAGGACAAGGGGGGGAGG
ACAAGGGGAAGCCGCAACAACGCTTTGGCATGAATGGAGGCCCGCAAAGC
AGCGCCGAAGAAAAAGGCGAAATTCCGGGAGTAGGACCCACCAGACACAT
TTATACTGGGCAAGATGGGAAGCGTATGGAGATAAGGGAGGTTTGGCTGG
AGAACCTCGACAAAGAGATGGTGGCTGTTCGCGAAGTGGTGGAGCAATAC
CCGTACGTGGCGATGGACACCGAGTTCCCGGGCGTGGTGGCGCGACCGGT
GGGGGACGTATCAGCGTCAGACTACCAGTACAAGACGCTCAAGTGCAATG
TGGACCTGCTTAAGATCATCCAGCTCGGACTTTCCTTCGCCGACTCGGAC
GGCAACAGCCCCCCGGAGTGCCCTACCTGGCAATTTAACTTCCGTTTCTC
CCTATCCGACGACATCTACGCGGAGGACTCGATTGAGCTTCTTAAGCAGA
GCGGGATCGACTTCTCGAAGCACGAGTCCCACGGTATCGATGTCTTCCGC
TTTGGCGAGCTCCTCATGACCAGCGGCTTGGTGCTGATGGACGAGGTGCG
GTGGATCTCGTTCCACTCCGGGTATGATTTCGGATACCTGCTCAAGGTCT
TGACCTGCGCTGCCTTGCCCTCGGACGAGAACGGGTTTTTTGACCTCCTG
CGTACCTATTTCCCGTGCTTCTACGACATCAAGTATCTGATGACGGCCTG
CCAGGGGCTCCATGGCGGCTTGCAAAGAATCGCCGAAGAGCTCTCAGTGG
CCCGCGTGGGGCCCATGCACCAAGCAGGCAGTGACTCCCTCCTGACGGCT
CAAACCTTTTTCCGTCTCTGCGCAGTATCTTTCGATGGCCTCAACAATCT
CAGCGATGAGAAATTCAAGGGAGAGCTCTTCGGACTGGGTCATAACCACA
CGGTCTACCGGAGCAAAATGCAGAATACCAATCGCCATGGCCACGGAGGT
CTTGAGAGACAGCGGGAAGTCCCCCCTCTTACCGACAGGGGCGACAGTGT
AAGCACTCCCCAGTCTATCAGCTCAACATCAGGACCGCGACGCCTAGGTA
CAGAAGCTGCTGCTACCTCGCCTTCTGCTGGAACCGGGACAGGGGGCAAT
GGGGACGCAAATGCGATGTCCGACTAAGATATGATTTCCTACGAATTCTT
GTTTCCAGAAAATGTGCAAACAAAAGGCGTATGTACAGAATGAGAGGAGA
GATTTGGAAAGAAATACTCGGAGGAAAGCGATTTGAAAGCAGCGCTAGAG
CCGCCAAAGAAAGGACTCCTCGTCATTCTGCCTGCAACACTCACAAATAT
TGCTGCTC
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protein sequence of rna5042

>rna5042-protein ID=rna5042-protein|Name=rna5042|organism=Nannochloropsis gaditana|type=polypeptide|length=898bp
MGLRPPHQPPPPPTHPPSPYSQPSHAQQHPDLAGPQGGSGPAGYPGHYRP
PSMDYTGAPHPQGMGPSPVPGMEAANQLPMLSEVDLSIASDPRFMRFTVS
KIPNSQNNAAATKLPLGVVIQPMALDASGQDSIDVVNFGATGIVRCKKCR
TYINPFVSWHDAGRRWRCNVCGTLNDVSSSYFNHLDEHGQRRDKHERPEL
SNGSVELVAPGEYMVRPPQPPVYLFVVDVSYSSVASGLLARTVETIKKNL
DALPGDPRTQFGLVTFDSTVHFYHFKPSLKMPQVLVVPDISELFLPLPED
MLVNLKESREVIDLLLESLPEMYEKTRNMDSALGPALTGAYRVMAPVGGK
MCVVLASMPTLGDGRLKPREELRALGTEREHAMLNPEESWYRTKAVEFSR
VQISVDLFCVAPAGQQTPFMDLASLTALSKFTGGNLFYYPGFAMEKDGRK
LEEEMGRILTRPTGFEAVMRVRATRGLKVTQFYGNYYIRGTDLLALPNCS
SESVFGVEMAHDEAFLTASVICVQAALLHTTSSGERRIRVHTVAAPVTAV
LQEVIASVDVDTLCNLMAKRMLEVALKTGLDAARHRLTQLCADLLRSCRA
FSTHQPQGRASGYQQQQQQQPAGIPSTLELLPLYTMAMTKNVAFRGGTDI
RPDLRTYMMQLFSVMNVATSRAFIHPNLFALHTMGNEAGLPVPPSKDSST
DEAPTAGRQKIRLPVAVNLSGERFVSEGIYLLENGISLYLWVGARADPRQ
LAALFGGMTSVEGADGGVLAQLFEEGKEEGDYARRVHAIVQALREERSLR
WLQVQVVKEGDAGLEASSLYRNLVEDRAAFSGGQYNYAEFMGMVSRGGGG
GMPGGMGGGGTRGGWRDGRRTSAWNGIPSTLKCYEMTIEEIKGSQGKE
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mRNA from alignment at CM002464.1:1028405..1033157+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5042 ID=rna5042|Name=rna5042|organism=Nannochloropsis gaditana|type=mRNA|length=4753bp|location=Sequence derived from alignment at CM002464.1:1028405..1033157+ (Nannochloropsis gaditana)
GTGGTGACCTCCCTGGCttttgcctcccgccctctcgtcttctcctgaag gcgaggagaagaagagaggagaagtCCAAGAGCACTCAAGCTCCTTGCAA GACGCCACGGCGGCCACTTTTCCGCCCGAATTTGAGGTGTGCATGGATGT GGGTAGCGTGGAGGGTTTGGACCCGCCGCGCGGCGGTGTATTGCGGAAAG ATTGGCTTTGATTCGCATCCTTTGACCTTGGTGGGGCCTCCGTTTCAAAC GCCTTCCTCTTTAGCGACATGGAAAAGTGTTGTTCTATACCTTGGGGGTC AAAGCCAAGCGCTCTCATTTGAAGGTTCTTACGGAGTCGACAAAGGTAAA ATAGATTCCTATGAAGTGGCTGTAATCAGGTAATGCATGTTGCCGGACTT TCGTACGTTTGTGAGCTTGGGCTCCCATTCCCGTCATCTGATGACCCTGC GAGAAACCGCTCCACTCGTCGTGAGCCCACGGTCAATGCTATGCTAATGA CCTTGAACTTGATGaatctctttcccccctacACGACGGCTCTACCATGT TCAAAGCACAGGCAAGTGACATGTCTcaaccgccccctcctccttacgGG GCTCCCCGGGGACCGCCCATGAATGGCATGCCGCCACAGCAGCCCtttca gcagcagcccccccctccacgcccctctgGCCCGGCACCAGGCTACCCTG CGTCATCACAACACTATCAAAGCCCTTATCAGCAatcgccgcagcagcag cagccgccgccgcaccAGCAACAACCTCTGGGTCCTGGCACGTACGGGCG CCCTCAACCTCTCGGTCCCCGCTCGGCTGCCGTCGGCGGCCCCCAAAACG cggctcccccccgacccggACCAGGCGCACCTTACACCATGATGCAGCCT CCAAGGGGcgggcctcctcttccgcacatgccgccaccttcccccgGGCC CGCGGCGGCGGGTGGGATGCTGAAAGGCACCCCCGCTGTTCCTCCCAGCC ACGGCCTTCAACAAGCGCAGTACCAGCCATCGAAAGGGCCAGTCGGACCG CCCAAAGTCCCCGGCACCCCGCCACCCGTGTACGGTCAGTCCatgccccc tccacccccggccCGCGGACCCCACGGGCtggcccctccatcctcctctc cgcgcCTCTCCGCGCCGGGagggccccctcccccaatgCGCCCGCACTCG GCCGTGCagggcatggggagggggccgcccatgcccccctcccccctttc gcAGCCTACCACGCATGCCcctcagcccccccccccgcggccGGCAGCTT CCTTCTACAAGGATCCTGGCaccggccccctcccagggcggggagttccc ccccctcccatgtcTGCGGGTGGTCCGTCCCCAGTCATGAACATGATGCA GCCgccgcagcaacaacaacaagcACCGCCACAACAcccacccccgccac cgggggggggggccgggagTGCAACAGCTGACGGGTCAATTCTCGCAGAT GGGCTTGCGTCCGCCccaccaacctccccccccgccgacgcACCCACCGT CCCCCTACTCCCAACCCTCCCACGCCCAACAACATCCAGACTTGGCGGGA CCCCAAGGAGGGTCGGGCCCAGCGGGCTACCCGGGGCACTACCGACCTCC CTCGATGGACTACACGGGCGCGCCCCACCCCCAAGGGATGGGGCCGAGCC CCGTGCCCGGCATGGAGGCTGCCAACCAGCTACCCATGCTCTCGGAGGTG GATCTCTCCATCGCGTCCGACCCGCGCTTCATGCGTTTCACCGTCAGCAA GATCCCGAACTCGCAGAACAACGCGGCGGCCACCAAACTCCCGCTGGGTG TGGTGATCCAGCCCATGGCCCTGGACGCCTCGGGTCAGGACTCCATCGAC GTGGTCAATTTCGGGGCCACGGGCATTGTACGCTGCAAAAAGTGTCGGAC CTACATCAATCCTTTCGTGTCGTGGCACGACGCGGGCCGGCGCTGGCGGT GCAACGTCTGTGGGACTCTGAACGACGTGTCGTCCTCTTACTTCAACCAC CTGGATGAACACGGGCAACGACGGGACAAGCACGAGCGACCGGAGCTTTC GAATGGGTCTGTGGAACTGGTGGCGCCGGGAGAATACATGGTGCGCCCGC CTCAGCCCCCGGTGTACCTCTTCGTCGTGGACGTGTCCTATTCCTCCGTG GCGAGTGGGCTGTTGGCTCGCACTGTCGAGACCATCAAGAAAAACTTAGA CGCCTTGCCCGGTGACCCCCGCACGCAATTCGGCCTGGTCACCTTCGATT CTACAGTACATTTCTACCACTTCAAGCCTTCCTTGAAGATGCCTCAAGTG CTGGTCGTTCCCGACATCTCGGagctcttcctgcccctgccgGAAGATAT GCTGGTTAATCTGAAGGAGAGCCGGGAGGTGATTGATCTGTTGTTGGAAA GTCTGCCTGAGATGTACGAAAAGACGCGAAACATGGATTCGGCGTTGGGC CCCGCCCTAACAGGGGCCTATCGGGTCATGGCCcccgtgggagggaagat gtgCGTGGTCTTGGCCAGCATGCCCACCCTGGGCGACGGCCGTCTGAAGC CCAGAGAAGAGCTGCGAGCCTTGGGAACCGAGCGGGAGCATGCTATGCTC AATCCCGAAGAAAGCTGGTACCGTACCAAGGCTGTGGAATTTTCGCGCGT GCAGATTTCCGTGGATCTCTTCTGTGTGGCGCCCGCCGGACAGCAAACTC CTTTCATGGACTTGGCGTCTTTGACGGCCTTGTCGAAATTCACGGGTGGC AACCTCTTCTATTATCCAGGATTTGCGATGGAGAAAGACGGAAggaagct ggaggaagagatgggaAGGATCTTGACGCGGCCGACGGGCTTCGAGGCGG TCATGCGGGTGCGGGCGACGCGGGGTTTGAAAGTGACACAATTTTACGGA AACTACTATATCAGAGGCACGGATCTCCTGGCTTTGCCAAACTGCTCGAG TGAAAGTGTGTTCGGGGTGGAGATGGCTCACGATGAAGCATTCTTGACTG CGTCGGTCATCTGCGTGCAGGCGGCTTTGCTGCATACGACCTCGAGTGGG GAACGTCGCATTCGAGTGCACACCGTTGCCGCGCCCGTGACGGCGGTCTT GCAAGAAGTGATTGCCTCGGTGGATGTGGACACCCTCTGCAACCTGATGG CCAAACGAATGCTGGAAGTGGCGCTCAAGACGGGTTTGGATGCGGCCCGG CATCGTTTGACACAGCTGTGCGCAGACCTCCTTCGGTCCTGCCGTGCCTT TAGTACGCACCAACCGCAGGGGAGGGCTTCCGGgtatcagcagcagcagc agcagcaaccgGCGGGCATTCCGTCCACTTTAGAacttcttcccctctac ACGATGGCGATGACCAAGAACGTGGCCTTCCGGGGGGGCACGGACATTCG ACCCGATCTTCGCACGTACATGATGCAGCTCTTTTCCGTCATGAACGTGG CAACCTCCCGTGCATTTATTCATCCTAACCTCTTCGCACTCCACACCATG GGAAATGAAGCTGGCCTGCCCGTTCCTCCGAGTAAAGATTCCTCAACGGA CGAAGCACCCACCGCAGGGAGACAAAAGATCCGCTTGCCTGTAGCAGTCA ACTTGTCGGGTGAAAGGTTTGTTTCAGAGGGCATCTATCTCCTGGAAAAT GGCATTTCGCTGTACCTGTGGGTTGGGGCGAGGGCAGATCCTCGACAACT TGCCGCTTTGTTCGGCGGGATGACCTctgtggagggggcggacggAGGCG TCCTCGCTCAGTTGTttgaggaaggcaaagaagagggggactACGCGCGA CGGGTGCACGCGATTGTTCAGGCTctgagggaagaaagaagttTGCGTTG GCTGCAGGTGCAGGTTgtgaaagaaggagacgcaGGGTTGGAGGCGTCTT CATTGTATCGGAACCTTGTGGAGGACCGCGCGGCATTTTCAGGAGGGCAG TATAATTACGCGGAATTCATGGGTATGGTGagtcgaggtggaggaggggg aatgccgggagggatggggggggggggcacaagGGGTGgttggagggatg ggaggaggacctccGCCTGGAATGGGATACCCTCCACCCTCAAGTGTTAT GAGATGACCATAGAAGAAATCAAAGGTAGCCAAGGAAAGGAGTGACTGGA TTTATAATGCAAGATGCGCATGAAAAAAGGACGCAAAGTAAGGAGCACAG GCATGAGGCCTGAGTTTCAATCACGTCTAGCGAAAAtaggaggacaggag cacAATTAGCGGTTCAATTGCTTTGACTTTATTGGCTATTTTATGGCATA TGGCATGAAAGTATGTGTCGCCAGGTATAGGATGGCTGGTGGAGCGGACA TGCTAGAGAAAGTCTCAATGGAGAATGTTCCCAAGAACAAGTTTAAAAGG AAGTTGTAACCGCTTGTGGGCAAGACGCGTCAATATAGGTGTGAAGATGA ACGTCGAAAACGCAAAAATAATAGATGCTTCGCAGAGGTTGACAGAGAAT TGCGAATTTCACAGACACTTACTGCCGTTTATTCAAGCAAAGTGCCTTCA AGCAAGCGTATGATTTTAATCGTTTGGTACTGAATGACTCCATGTTTGAC CTGAATCACCTTCTAGGTTGCAGATGTCGATCTCTCATTTGCTTTTATCT AACGGTGCTTGTCCATCTGACGTAGGTAAGATTTTATCATCACCCAAACC TTG
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Coding sequence (CDS) from alignment at CM002464.1:1028405..1033157+

>rna5042 ID=rna5042|Name=rna5042|organism=Nannochloropsis gaditana|type=CDS|length=2697bp|location=Sequence derived from alignment at CM002464.1:1028405..1033157+ (Nannochloropsis gaditana)
ATGGGCTTGCGTCCGCCccaccaacctccccccccgccgacgcACCCACC
GTCCCCCTACTCCCAACCCTCCCACGCCCAACAACATCCAGACTTGGCGG
GACCCCAAGGAGGGTCGGGCCCAGCGGGCTACCCGGGGCACTACCGACCT
CCCTCGATGGACTACACGGGCGCGCCCCACCCCCAAGGGATGGGGCCGAG
CCCCGTGCCCGGCATGGAGGCTGCCAACCAGCTACCCATGCTCTCGGAGG
TGGATCTCTCCATCGCGTCCGACCCGCGCTTCATGCGTTTCACCGTCAGC
AAGATCCCGAACTCGCAGAACAACGCGGCGGCCACCAAACTCCCGCTGGG
TGTGGTGATCCAGCCCATGGCCCTGGACGCCTCGGGTCAGGACTCCATCG
ACGTGGTCAATTTCGGGGCCACGGGCATTGTACGCTGCAAAAAGTGTCGG
ACCTACATCAATCCTTTCGTGTCGTGGCACGACGCGGGCCGGCGCTGGCG
GTGCAACGTCTGTGGGACTCTGAACGACGTGTCGTCCTCTTACTTCAACC
ACCTGGATGAACACGGGCAACGACGGGACAAGCACGAGCGACCGGAGCTT
TCGAATGGGTCTGTGGAACTGGTGGCGCCGGGAGAATACATGGTGCGCCC
GCCTCAGCCCCCGGTGTACCTCTTCGTCGTGGACGTGTCCTATTCCTCCG
TGGCGAGTGGGCTGTTGGCTCGCACTGTCGAGACCATCAAGAAAAACTTA
GACGCCTTGCCCGGTGACCCCCGCACGCAATTCGGCCTGGTCACCTTCGA
TTCTACAGTACATTTCTACCACTTCAAGCCTTCCTTGAAGATGCCTCAAG
TGCTGGTCGTTCCCGACATCTCGGagctcttcctgcccctgccgGAAGAT
ATGCTGGTTAATCTGAAGGAGAGCCGGGAGGTGATTGATCTGTTGTTGGA
AAGTCTGCCTGAGATGTACGAAAAGACGCGAAACATGGATTCGGCGTTGG
GCCCCGCCCTAACAGGGGCCTATCGGGTCATGGCCcccgtgggagggaag
atgtgCGTGGTCTTGGCCAGCATGCCCACCCTGGGCGACGGCCGTCTGAA
GCCCAGAGAAGAGCTGCGAGCCTTGGGAACCGAGCGGGAGCATGCTATGC
TCAATCCCGAAGAAAGCTGGTACCGTACCAAGGCTGTGGAATTTTCGCGC
GTGCAGATTTCCGTGGATCTCTTCTGTGTGGCGCCCGCCGGACAGCAAAC
TCCTTTCATGGACTTGGCGTCTTTGACGGCCTTGTCGAAATTCACGGGTG
GCAACCTCTTCTATTATCCAGGATTTGCGATGGAGAAAGACGGAAggaag
ctggaggaagagatgggaAGGATCTTGACGCGGCCGACGGGCTTCGAGGC
GGTCATGCGGGTGCGGGCGACGCGGGGTTTGAAAGTGACACAATTTTACG
GAAACTACTATATCAGAGGCACGGATCTCCTGGCTTTGCCAAACTGCTCG
AGTGAAAGTGTGTTCGGGGTGGAGATGGCTCACGATGAAGCATTCTTGAC
TGCGTCGGTCATCTGCGTGCAGGCGGCTTTGCTGCATACGACCTCGAGTG
GGGAACGTCGCATTCGAGTGCACACCGTTGCCGCGCCCGTGACGGCGGTC
TTGCAAGAAGTGATTGCCTCGGTGGATGTGGACACCCTCTGCAACCTGAT
GGCCAAACGAATGCTGGAAGTGGCGCTCAAGACGGGTTTGGATGCGGCCC
GGCATCGTTTGACACAGCTGTGCGCAGACCTCCTTCGGTCCTGCCGTGCC
TTTAGTACGCACCAACCGCAGGGGAGGGCTTCCGGgtatcagcagcagca
gcagcagcaaccgGCGGGCATTCCGTCCACTTTAGAacttcttcccctct
acACGATGGCGATGACCAAGAACGTGGCCTTCCGGGGGGGCACGGACATT
CGACCCGATCTTCGCACGTACATGATGCAGCTCTTTTCCGTCATGAACGT
GGCAACCTCCCGTGCATTTATTCATCCTAACCTCTTCGCACTCCACACCA
TGGGAAATGAAGCTGGCCTGCCCGTTCCTCCGAGTAAAGATTCCTCAACG
GACGAAGCACCCACCGCAGGGAGACAAAAGATCCGCTTGCCTGTAGCAGT
CAACTTGTCGGGTGAAAGGTTTGTTTCAGAGGGCATCTATCTCCTGGAAA
ATGGCATTTCGCTGTACCTGTGGGTTGGGGCGAGGGCAGATCCTCGACAA
CTTGCCGCTTTGTTCGGCGGGATGACCTctgtggagggggcggacggAGG
CGTCCTCGCTCAGTTGTttgaggaaggcaaagaagagggggactACGCGC
GACGGGTGCACGCGATTGTTCAGGCTctgagggaagaaagaagttTGCGT
TGGCTGCAGGTGCAGGTTgtgaaagaaggagacgcaGGGTTGGAGGCGTC
TTCATTGTATCGGAACCTTGTGGAGGACCGCGCGGCATTTTCAGGAGGGC
AGTATAATTACGCGGAATTCATGGGTATGGTGagtcgaggtggaggaggg
ggaatgccgggagggatggggggggggggcacaagGGGTGgttggaggga
tgggaggaggacctccGCCTGGAATGGGATACCCTCCACCCTCAAGTGTT
ATGAGATGACCATAGAAGAAATCAAAGGTAGCCAAGGAAAGGAGTGA
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Synonyms
Publications