rna5039, rna5039 (mRNA) Nannochloropsis gaditana

Overview
Namerna5039
Unique Namerna5039
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length951
Alignment locationCM002464.1:1002086..1002391 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100037g7.10721.mrna
Orig protein idgnl|cribi|Naga_100037g7.10721
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:1002086..1002391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100037g7gene4866Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5039rna5039-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25632.1cds5027Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5039 ID=rna5039|Name=rna5039|organism=Nannochloropsis gaditana|type=mRNA|length=951bp
ATGCTCGGCTCCTCGCCTGCCCCTCCCATCAATCCTACGCCTGCCCCGTC
CATCGCTCCTACGCGTGCTCCTACCAGTATCTCAACTCCAGCTCCTACAC
AGGCTCCCACTCCCTCCCCTACTGACGCCAACACCAAGATCCCTACGCCA
GCTCCTACAATGGCTCCCACTCCCTCCCCTACTGACACCTCCACCAAGAT
CCCTACGCCAGCTCCTACAATGGCTCCCACTCTATCCCCTACTAACGCCC
CCACCAAGATCCCCACGCCAGCTCCTACGCCGGCCCCCACTCCATCCCCT
ACTGACGCCCCAACCCAGATCCCTACCAAGATCCCCACGGCTGCTCCTAC
TAAGCGGCCTTCCCCGGCTCCCACTACGCCCGCTCCGGTCACTCCAATCG
ACCCCTTCAATACCCCGGTCCTGGTTAATAACTCCACATGCATTCGCGTT
GTTGATTTTCATACCGATCCTTCTGCCAAGTCCTTCAAAGCGAAAAGGGA
TCGATGGACCATTACGGGCTTCTTCAACGACCCCGCAGAAACTGCGGTCG
TGAACATTGGCCAGTACGGCATCATTGCAGTGCTCCAGGATGCAGCGAAG
AAGGCTCTGAGCTCTACTTTCTTCACACCCCCGCAATGCAAAGCGTTGAA
CAATATACGAGGCGTGACTTGCAAGACTACTGGTGCTCGCTTACGGCTCA
AGAAGACGAAGGATCCGAGCGTACGCAACAAATCAAGCGAAGGCGCTTTC
TACAAGGTGAAAGGTGTCTTTCGCCGGCTGACCTTCCTGCAACAGCCTGT
CCAGACCCCTCTTACCACGATATTTGCAGTTCAGTTTCCGAACACGACTA
CTGTCTTCACCACCTCAGCCACCGAGCAATGCACGGAAAAGGGCAAGACA
GGAGGCAAGAAGACCAAGATCGACTGCTGCAGGCCGTCTAAAAAGAAGTA
G
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protein sequence of rna5039

>rna5039-protein ID=rna5039-protein|Name=rna5039|organism=Nannochloropsis gaditana|type=polypeptide|length=101bp
MQSVEQYTRRDLQDYWCSLTAQEDEGSERTQQIKRRRFLQGERCLSPADL
PATACPDPSYHDICSSVSEYDYCLHHLSHRAMHGKGQDRRQEDQDRLLQA
V
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mRNA from alignment at CM002464.1:1002086..1002391+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5039 ID=rna5039|Name=rna5039|organism=Nannochloropsis gaditana|type=mRNA|length=306bp|location=Sequence derived from alignment at CM002464.1:1002086..1002391+ (Nannochloropsis gaditana)
ATGCAAAGCGTTGAACAATATACGAGGCGTGACTTGCAAGACTACTGGTG
CTCGCTTACGGCtcaagaagacgaaggatcCGAGCGTACGCAACAAATCA
AGCGAAGGCGCTTTCTACAAGGTGAAAGGTGTCTTTCGCCGGCTGACCTT
CCTGCAACAGCCTGTCCAGACCCCTCTTACCACGATATTTGCAGTTCAGT
TTCCGAATACGACTACTGTCTTCACCACCTCAGCCACCGAGCAATGCACG
GAAAAGGGCAAGACAGGAGGCAAGAAGACCAAGATCGACTGCTGCAGGCC
GTCTAA
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Coding sequence (CDS) from alignment at CM002464.1:1002086..1002391+

>rna5039 ID=rna5039|Name=rna5039|organism=Nannochloropsis gaditana|type=CDS|length=306bp|location=Sequence derived from alignment at CM002464.1:1002086..1002391+ (Nannochloropsis gaditana)
ATGCAAAGCGTTGAACAATATACGAGGCGTGACTTGCAAGACTACTGGTG
CTCGCTTACGGCtcaagaagacgaaggatcCGAGCGTACGCAACAAATCA
AGCGAAGGCGCTTTCTACAAGGTGAAAGGTGTCTTTCGCCGGCTGACCTT
CCTGCAACAGCCTGTCCAGACCCCTCTTACCACGATATTTGCAGTTCAGT
TTCCGAATACGACTACTGTCTTCACCACCTCAGCCACCGAGCAATGCACG
GAAAAGGGCAAGACAGGAGGCAAGAAGACCAAGATCGACTGCTGCAGGCC
GTCTAA
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Synonyms
Publications