rna5038, rna5038 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5038
Unique Name	rna5038
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2307
Alignment location	CM002464.1:998126..999325 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100037g5.10733.mrna
Orig protein id	gnl\|cribi\|Naga_100037g5.10733
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:998126..999325 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100037g5	gene4865	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5038	rna5038-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25644.1	cds5026	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:998126..999325+
coding sequence from alignment at CM002464.1:998126..999325+

mRNA sequence

>rna5038 ID=rna5038|Name=rna5038|organism=Nannochloropsis gaditana|type=mRNA|length=2307bp
ATGGTGAATGGGATGCTGGAGTTGACGGGGCAAAAGGAAGATGTGGATGG
GTACTACCGAGAAAAGTTTGAGAATGCGAAGAAGGCGTGGGAGGCTTGGA
AGAATTATTTGGAGGAAAAAGATGCCCGGAGGAAAGCGGGGCGTGAACGA
GCGATGCGTCGGAAGGCGATGGGCTACGATGAGCACAATGACAATTGGAA
AGGACCAAGCTGGGTGGAAGGAAGGGAGGGGGGGAGGGAGGGAGGAGGGA
GAGGGTGGGACCGTCAGGGCACCGGGGTGGAGGACAAGTGGGTGCCGCGG
GCAGAAAGGGGTGGAAGGGGGGATGAGGAGGAGGAGGAGGGAGAGGATAA
GGAACTAGAAAATCATTTTTTAGACCGGCTGATGTTCGACTTGGATAAGA
CGCCGGGCGCGGGGAGGAGGGGAGGGAGGGAGGGAGGAAGGGAGGGAGAG
AAAGAGAGGGGTAGGGGGATAGGGAGGGAGAGCACGCTGGGGGACGATGA
ATTGGATGCCTTGATCCAATCATCTCCTGTCAGCACCCCGCCAGAAGTGG
CTCAGCGTCGAGGTGGAGTAGAGCAGGAAGGTCGAGTTGGTGGAAGAGGA
CGCGGGGGAGGGGCCGGGGGAGGGGCCGGGGGAGGAACTTTGAGCGAGGA
GGAGCAGAAGGAATTGGACGTGTGGCTGGGAATGATTTCAAGTGGGAGAG
GGACCTCCGCCTCCTCCAGTCCTTCTGCATTGTCTCTCTTCAAAGGCCCT
GCCTCGCTCCCATCCTCCTCGTTCACTCCCTCGCCGGGAATGGGAGGGCA
GCCGCGCCCAAAACCCCCCTCAGGGGCGAAGGGAAAAGACTTTTCGTTGG
ATCCGGAGGAAGAAAAAGAGTTGAACGAATGGCTGAATCGCTTCGACGCT
GACTACAAGGAGGGTGCAGATGGCTTGCGGGTTGAGAAAACAAAGAGCGG
AAGGGAGGAGGGTACTGAAAGAGGAAGGGAGGGAGGAAGGGAAAAGGCAG
AGGGGGAAGACGCGGTAGATCGAGAATTAGCTGACTTGTTGACGAAACTG
GAGGCGGCAGAAATCAGTGCTTCTGCAGGGGGAGGAGAGAGGGGGGTGAA
GATAAAGGGGGGCGGCGGAACAGCACCACGAATCCCTTCGTTGGGGGTAG
AGGGGGTGGAAGCAGCGGTAGGAGTCGACAGTTTCCTCTCGGAGCTTTAC
CGGCCTTCGAAAGGAGGAAAAAGAGGAAAGAAGGGGGCTCAGATTGAAGC
ATCTTCGGGGTTGGACAGCGCGTCTCTGTTAAGGATGGCTCTGGAGGACG
TTGGGGGCCGGGGGGGGGAGGCCGAGATACCTCCCATTTCGTCGAGGAGT
CAGGATGCCAGAATGAATACGGGACACAGGGGAGGGGAAGAGGAAGAGGA
GGACGAGCGAAAGAATGACGAGACGCTGCCAGCCTCGGTAAAGAGGCGTC
TATTCGTTAGCCGGACTGTTGAGGGAGAGGATGAAGGGGAAAACGAGGGC
GAAGACGAGGGCGGAGACGATGAAGAGGAATGGGGAGGAGGGAGAAGGAG
CAGCGATCGAGGGCAAACGAGGGAGAACGATTTACTTCTGGGCGCTTACA
GTGAAGATCCCGAAGAAGCTCCGGGTCAGTTTTTGGAGGAGGGGCTGGAG
GAATCTGTCCACTTGGGCCGCCCTAGAGGGGGCGGAATGGGTGGGATGAG
GCAAGGCTACATGTACGATGACCCCTTGGGTGGAGGGAGGGAGTTGATGT
CCCTTAATGCCAGGCCAGGAGGGAAAGGGGGAAGCAGGGATGGAAGGAAA
GGAGAGAAAGGAGATTGGATGCGGGCTTTAGCGGAAGAGAACGTGAACAG
CGGGAATGAGGATATCTTCAATAGTTTTGAGGACGTAGGTGATTTAGAGG
AACTGGAGAAACTTGATACATTGTTTGCAGGCGAAGTTGGCCAGAAAGGC
GAAATGGAAGGAAAGATAAGAAAGAACCGGGTCAAGAGGAACGAGGATGA
ATGGGGGTCATTGTTAGATGAAGTGGATTTGGGAGAGCTGGATGAATTTG
AAGAAATCGAAAAGCTTGTAAATACGGGTAGAAAAAGACAGGAAGATATT
TACGCGGAGGGGAAGTCAGAAAAGAGGAATTCGAAAGTCCTGGCACCAAC
GGTCGGTGGACGCGGGAGGGAAAGTACGAGATTGTCACCTTCGATGATTG
AGGGAATGAAGGTGGTAGATCTGCGGGCGGAATTGAGGGCTATGGGCCTA
ACAGTGAGCGGTTCTAAGGCAGACCTTCAGGCGCGTCTCGTACGAGCCAC
ACAGTAA

protein sequence of rna5038

>rna5038-protein ID=rna5038-protein|Name=rna5038|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MLGSSPAPPINPTPAPSIAPTRAPTSISTPAPTQAPTPSPTDANTKIPTP
APTMAPTPSPTDTSTKIPTPAPTMAPTLSPTNAPTKIPTPAPTPAPTPSP
TDAPTQIPTKIPTAAPTKRPSPAPTTPAPVTPIDPFNTPVLVNNSTCIRV
VDFHTDPSAKSFKAKRDRWTITGFFNDPAETAVVNIGQYGIIAVLQDAAK
KALSSTFFTPPQCKALNNIRGVTCKTTGARLRLKKTKDPSVRNKSSEGAF
YKVKGVFRRLTFLQQPVQTPLTTIFAVQFPNTTTVFTTSATEQCTEKGKT
GGKKTKIDCCRPSKKK

mRNA from alignment at CM002464.1:998126..999325+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5038 ID=rna5038|Name=rna5038|organism=Nannochloropsis gaditana|type=mRNA|length=1200bp|location=Sequence derived from alignment at CM002464.1:998126..999325+ (Nannochloropsis gaditana)
ATGCTCGGCTCCTCGGTATTTTCGAAATCGGAGTTTCCATAGCCGGTCTT
TTTTCCTCAGACCAAGAGAAGTGTACTTCTGCAATGTGAAAGCGTTTGCG
TGCATCTGCGTGCACAcacgccagcgcctccaATCAACCCCACCCCTGCC
CCGTCCAAGGATCCGAcacctgcccctcccatcaGTCCtacgcctgcccc
tcccatcgaccccacgcctgcccctcccatcaaTCCtacgcctgcccctc
ccatcgaCCCCAagcctgcccctcccatcaaTCCTACGCCTGCCCCGTCC
ATCGCTCCTACGCGTGCTCCTACCAGTATCTCAACTCCAGCTCCTACACA
ggctcccactccctcccctactgACGCCAACACCAAGATCCCTACGCCAG
CTCCTACAAtggctcccactccctcccctactgACACCTCCACCAAGATC
CCTACGCCAGCTCCTACAATGGCTCCCACTCTATCCCCTACTAACGCCCC
CACCAAGATCCCCACGCCAGCTCCTACGCCGGCCCCCACTCCATCCCCTA
CTGACGCCCCAACCCAGATCCCTACCAAGATCCCCACGGCTGCTCCTACT
AAGCGGCCTTCCCCGGCTCCCACTACGCCCGCTCCGGTCACTCCAATCGA
CCCCTTCAATACCCCGGTCCTGGTTAATAACTCCACATGCATTCGCGTTG
TTGATTTTCATACCGATCCTTCTGCCAAGTCCTTCAAAGCGAAAAGGGAT
CGATGGACCATTACGGGCTTCTTCAACGACCCCGCAGAAACTGCGGTCGT
GAACATTGGCCAGTACGGCATCATTGCAGTGCTCCAGGATGCAGCGAAGA
AGGCTCTGAGCTCTACTTTCTTCACACCCCCGCAATGCAAAGCGTTGAAC
AATATACGAGGCGTGACTTGCAAGACTACTGGTGCTCGCTTACGGCtcaa
gaagacgaaggatcCGAGCGTACGCAACAAATCAAGCGAAGGCGCTTTCT
ACAAGGTGAAAGGTGTCTTTCGCCGGCTGACCTTCCTGCAACAGCCTGTC
CAGACCCCTCTTACCACGATATTTGCAGTTCAGTTTCCGAACACGACTAC
TGTCTTCACCACCTCAGCCACCGAGCAATGCACGGAAAAGGGCAAGACAG
GAGGCAAGAAGACCAAGATCGACTGCTGCAGGCCGTCTAAAAAGAAGTAG

Coding sequence (CDS) from alignment at CM002464.1:998126..999325+

>rna5038 ID=rna5038|Name=rna5038|organism=Nannochloropsis gaditana|type=CDS|length=1902bp|location=Sequence derived from alignment at CM002464.1:998126..999325+ (Nannochloropsis gaditana)
ATGCTCGGCTCCTCGcctgcccctcccatcaaTCCTACGCCTGCCCCGTC
CATCGCTCCTACGCGTGCTCCTACCAGTATCTCAACTCCAGCTCCTACAC
AggctcccactccctcccctactgACGCCAACACCAAGATCCCTACGCCA
GCTCCTACAAtggctcccactccctcccctactgACACCTCCACCAAGAT
CCCTACGCCAGCTCCTACAATGGCTCCCACTCTATCCCCTACTAACGCCC
CCACCAAGATCCCCACGCCAGCTCCTACGCCGGCCCCCACTCCATCCCCT
ACTGACGCCCCAACCCAGATCCCTACCAAGATCCCCACGGCTGCTCCTAC
TAAGCGGCCTTCCCCGGCTCCCACTACGCCCGCTCCGGTCACTCCAATCG
ACCCCTTCAATACCCCGGTCCTGGTTAATAACTCCACATGCATTCGCGTT
GTTGATTTTCATACCGATCCTTCTGCCAAGTCCTTCAAAGCGAAAAGGGA
TCGATGGACCATTACGGGCTTCTTCAACGACCCCGCAGAAACTGCGGTCG
TGAACATTGGCCAGTACGGCATCATTGCAGTGCTCCAGGATGCAGCGAAG
AAGGCTCTGAGCTCTACTTTCTTCACACCCCCGCAATGCAAAGCGTTGAA
CAATATACGAGGCGTGACTTGCAAGACTACTGGTGCTCGCTTACGGCtca
agaagacgaaggatcCGAGCGTACGCAACAAATCAAGCGAAGGCGCTTTC
TACAAGGTGAAAGGTGTCTTTCGCCGGCTGACCTTCCTGCAACAGCCTGT
CCAGACCCCTCTTACCACGATATTTGCAGTTCAGTTTCCGAACACGACTA
CTGTCTTCACCACCTCAGCCACCGAGCAATGCACGGAAAAGGGCAAGACA
GGAGGCAAGAAGACCAAGATCGACTGCTGCAGGCCGTCTAAAAAGAAGTA
GATGCTCGGCTCCTCGcctgcccctcccatcaaTCCTACGCCTGCCCCGT
CCATCGCTCCTACGCGTGCTCCTACCAGTATCTCAACTCCAGCTCCTACA
CAggctcccactccctcccctactgACGCCAACACCAAGATCCCTACGCC
AGCTCCTACAAtggctcccactccctcccctactgACACCTCCACCAAGA
TCCCTACGCCAGCTCCTACAATGGCTCCCACTCTATCCCCTACTAACGCC
CCCACCAAGATCCCCACGCCAGCTCCTACGCCGGCCCCCACTCCATCCCC
TACTGACGCCCCAACCCAGATCCCTACCAAGATCCCCACGGCTGCTCCTA
CTAAGCGGCCTTCCCCGGCTCCCACTACGCCCGCTCCGGTCACTCCAATC
GACCCCTTCAATACCCCGGTCCTGGTTAATAACTCCACATGCATTCGCGT
TGTTGATTTTCATACCGATCCTTCTGCCAAGTCCTTCAAAGCGAAAAGGG
ATCGATGGACCATTACGGGCTTCTTCAACGACCCCGCAGAAACTGCGGTC
GTGAACATTGGCCAGTACGGCATCATTGCAGTGCTCCAGGATGCAGCGAA
GAAGGCTCTGAGCTCTACTTTCTTCACACCCCCGCAATGCAAAGCGTTGA
ACAATATACGAGGCGTGACTTGCAAGACTACTGGTGCTCGCTTACGGCtc
aagaagacgaaggatcCGAGCGTACGCAACAAATCAAGCGAAGGCGCTTT
CTACAAGGTGAAAGGTGTCTTTCGCCGGCTGACCTTCCTGCAACAGCCTG
TCCAGACCCCTCTTACCACGATATTTGCAGTTCAGTTTCCGAACACGACT
ACTGTCTTCACCACCTCAGCCACCGAGCAATGCACGGAAAAGGGCAAGAC
AGGAGGCAAGAAGACCAAGATCGACTGCTGCAGGCCGTCTAAAAAGAAGT
AG

Synonyms

Publications