rna5037, rna5037 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5037
Unique Name	rna5037
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1287
Alignment location	CM002464.1:995191..997497 +

Link to JBrowse

Properties


Property Name	Value
Product	DNA-binding SAP
Orig transcript id	gnl\|cribi\|Naga_100037g4.10738.mrna
Orig protein id	gnl\|cribi\|Naga_100037g4.10738
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:995191..997497 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100037g4	gene4864	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5037	rna5037-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25649.1	cds5025	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:995191..997497+
coding sequence from alignment at CM002464.1:995191..997497+

mRNA sequence

>rna5037 ID=rna5037|Name=rna5037|organism=Nannochloropsis gaditana|type=mRNA|length=1287bp
ATGGATAACCACGATCATGACAGGCCACGCGTAAGCAGTGGAACGCTTAC
CGGTAATCGACATACTGGGGGGGTAATGTGGCTGATCATCGGTCTTGTCG
TGGCAGGCAAGGTGTGCTGCAGCACGGCTTTCTCGACTGCTTTTCAACTG
CCTGGCGCCTCGGATCCGCGCAAGCGCGTCCTGCCCGCTGGATCGAGTCC
GCGGCTATTTTCCCTCCCCTCGCTCCACGCCTCCCCTTTAACCTCCACCT
CCGGCAGCGATATTTTCGAACAAGACGGCTCCATACCATCTTTTCCTCCC
TCCCGTGCCGCCACCTCTGCCGTGGACAGATACTCTGTGGGACCGGTTGA
CCCTGGCGATGATCGCGAGACTCGTCCCCACGCGGACAGCATATCGGAGG
CGGAGATCGAGGAAGTAGCGCGAAAATGGGAGCGTCGGAAACAAAGCCGG
CGGGAGCGGATCACCAAGAAGAAAGGGGCCCGGGAGGCGATGTTGGACGA
GGCGGAGGACGTGATTCCCGACCGGGAGGTGCCTTTGTGGTATGCGTTGA
AAGTGAAGACGGGCATGGAAATCCAGATCCGCGACACCTTGGGTGAGCTG
GCCACCCTCCCTCAGTACCGGGGCCAGATTTTGGAGACTTTGGTGCCCAT
GGCGAAGTCGGTCAAGTCCTTGGGGAAATCCCTTCGCCTGGTCGAACAGC
CCTTGCACCGCGGCTACGTCTTCATCCACATGGCCATGTCGCGCGACCTC
CACGACGCTGTGCTGGCTCCCAATGGCGTGGGCTGCTTCATCGGTCGGCG
CGTGGCGGGGAAAGGGATCATCCCCAACCCGCTCCGGGCCAAGGAAGCAG
ATCGGTTGAAAGAGCGGGCCCTGTACGAAGCCGGTCGCACCATCGACCTG
GAGGCGATCCCCTTCCGGCCCAAGGACCGGGTGGACATCCTTGTGGGAGA
GTTTGCCTATGCCCGTGGACGGGTCACGTCCGTGAAGGAGACCGAGGTGA
ATGTGGCTGTGAAGCGGAACAAGGTGGAAGTGCGGGTGACGCTGCCTCAA
TCAGGGGTCCGGAAGCTCACTCAGGAAGAGCTGGATCAGGAAGCGAGGGA
GGCCGGGGAGGAGGGACGCCGGGCGTTTGACCGGGCCCGCGGGGGGGGGT
GGACGGGTGGGAGGCGATCGCACGGAGCAATAGCGATGCAGTGGCCCTCT
CAGGAGAAAGGAGGGGAGGGGAGGTGGTGCGAGAGAAGAAGAAGAAGGCG
CCGGACCGGAAAGGACCGAGCTTATACCGGATTTTGA

protein sequence of rna5037

>rna5037-protein ID=rna5037-protein|Name=rna5037|organism=Nannochloropsis gaditana|type=polypeptide|length=768bp
MVNGMLELTGQKEDVDGYYREKFENAKKAWEAWKNYLEEKDARRKAGRER
AMRRKAMGYDEHNDNWKGPSWVEGREGGREGGGRGWDRQGTGVEDKWVPR
AERGGRGDEEEEEGEDKELENHFLDRLMFDLDKTPGAGRRGGREGGREGE
KERGRGIGRESTLGDDELDALIQSSPVSTPPEVAQRRGGVEQEGRVGGRG
RGGGAGGGAGGGTLSEEEQKELDVWLGMISSGRGTSASSSPSALSLFKGP
ASLPSSSFTPSPGMGGQPRPKPPSGAKGKDFSLDPEEEKELNEWLNRFDA
DYKEGADGLRVEKTKSGREEGTERGREGGREKAEGEDAVDRELADLLTKL
EAAEISASAGGGERGVKIKGGGGTAPRIPSLGVEGVEAAVGVDSFLSELY
RPSKGGKRGKKGAQIEASSGLDSASLLRMALEDVGGRGGEAEIPPISSRS
QDARMNTGHRGGEEEEEDERKNDETLPASVKRRLFVSRTVEGEDEGENEG
EDEGGDDEEEWGGGRRSSDRGQTRENDLLLGAYSEDPEEAPGQFLEEGLE
ESVHLGRPRGGGMGGMRQGYMYDDPLGGGRELMSLNARPGGKGGSRDGRK
GEKGDWMRALAEENVNSGNEDIFNSFEDVGDLEELEKLDTLFAGEVGQKG
EMEGKIRKNRVKRNEDEWGSLLDEVDLGELDEFEEIEKLVNTGRKRQEDI
YAEGKSEKRNSKVLAPTVGGRGRESTRLSPSMIEGMKVVDLRAELRAMGL
TVSGSKADLQARLVRATQ

mRNA from alignment at CM002464.1:995191..997497+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5037 ID=rna5037|Name=rna5037|organism=Nannochloropsis gaditana|type=mRNA|length=2307bp|location=Sequence derived from alignment at CM002464.1:995191..997497+ (Nannochloropsis gaditana)
atggtgaatGGGATGCTGGAGTTGACGGGGCAAAAGGAAGATGTGGATGG
GTACTACCGAGAAAAGTTTGAGAATGCGAagaaggcgtgggaggcTTGGA
AGAATTatttggaggaaaaagatgcccggaggaaagcggggcgTGAACGA
GCGATGCGTCGGAAGGCGATGGGCTACGATGAGCACAATGACAATTGGAA
AGGACCAAGCtgggtggaaggaagggagggggggagggagggaggaggga
gagggtgggaccGTCAGGGCaccggggtggaggacaagtGGGTGCCGCGG
GCagaaaggggtggaaggggggatgaggaggaggaggagggagaggataa
GGAACTAGAAAATCATTTTTTAGACCGGCTGATGTTCGACTTGGATAAGA
CGCCgggcgcggggaggaggggagggagggagggaggaagggagggagag
aaagagaggggtagggggatagggagggagagcacgCTGGGGGACGATGA
ATTGGATGCCTTGATCCAATCATCTCCTGTCAGCACCCCGCCAGAAGTGG
CTCAGCGTCGAGGTGGAGTAGAGCAGGAAGGTCGAGttggtggaagagga
cgcgggggaggggccgggggaggggccgggggaggaactttgagcgagga
ggagcagaaggaaTTGGACGTGTGGCTGGGAATGATTTCaagtgggagag
ggacctccgcctcctccagtcCTTCTGCATTGTCTCTCTTCAAAGgccct
gcctcgctcccatcctcctcgttcacTCCCTCGCCGGGAATGGGAGGGCA
GCCGCGCCCAAAACCCCCCTCAGGGGCGAAGGGAAAAGACTTTTCGTTGG
AtccggaggaagaaaaagagttGAACGAATGGCTGAATCGCTTCGACGCT
GACTACAAGGAGGGTGCAGATGGCTTGCGGGTTGAGAAAACAAagagcgg
aagggaggagggtactgaaagaggaagggagggaggaagggaaaaggcag
agggggaagacgcggTAGATCGAGAATTAGCTGACTTGTTGACGAAACTG
GAGGCGGCAGAAATCAGTGCTtctgcagggggaggagagaggggggtgAA
GATAAAGGGGGGCGGCGGAACAGCACCACGAATCCCTTCGTTGGGGGTAG
AGGGGGTGGAAGCAGCGGTAGGAGTCGACAGTTTCCTCTCGGAGCTTTAC
CGGCCttcgaaaggaggaaaaagaggaaagaagggggctCAGATTGAAGC
ATCTTCGGGGTTGGACAGCGCGTCTCTGTTAAGGATGGCTCTGGAGGACG
ttgggggccgggggggggaggccgagaTACCTCCCATTTCGTCGAGGAGT
CAGGATGCCAGAATGAATACGGGacacaggggaggggaagaggaagagga
ggacgagcgaAAGAATGACGAGACGCTGCCAGCCTCGGTAAAGAGGCGTC
TATTCGTTAGCCGGACtgttgagggagaggatgaaggggaaaacgagggc
gaagacgagggcggagacgatgaagaggaatggggaggagggagaaggag
cagcgaTCGAGGGCAAACGAGGGAGAACGATTTACTTCTGGGCGCTTACA
GTGAAGATCCCGAAGAAGCTCCGGGTCAgtttttggaggaggggctggag
gaatCTGTCCACTTGGGCCGCCCTAGAGGGGGCGGAATGGGTGGGATGAG
GCAAGGCTACATGTACGATGACCCCttgggtggagggagggagttgatGT
CCCTTAATGCcaggccaggagggaaagggggaagcagggatggaaggaaa
ggagagaaaggagattGGATGCGGGCTTTAGCGGAAGAGAACGTGAACAG
CGGGAATGAGGATATCTTCAATAGTTTTGAGGACGTAGGTGATTTAGAGG
AACTGGAGAAACTTGATACATTGTTTGCAGGCGAAGTTGGCCAGAAAGGc
gaaatggaaggaaagaTAAGAAAGAACCGGGTCAAGAGGAACGAGGATGA
ATGGGGGTCATTGTTAGATGAAGTGGATTTGGGAGAGCTGGATGAATTTG
AAGAAATCGAAAAGCTTGTAAATACGGGTAGAAAAAGACAGGAAGATATT
TACGCGGAGGGGAAGTCAGAAAAGAGGAATTCGAAAGTCCTGGCACCAAC
GGTCGGTggacgcgggagggaaagtacGAGATTGTCACCTTCGATGATTG
AGGGAATGAAGGTGGTAGATCTGCGGGCGGAATTGAGGGCTATGGGCCTA
ACAGTGAGCGGTTCTAAGGCAGACCTTCAGGCGCGTCTCGTACGAGCCAC
ACAGTAA

Coding sequence (CDS) from alignment at CM002464.1:995191..997497+

>rna5037 ID=rna5037|Name=rna5037|organism=Nannochloropsis gaditana|type=CDS|length=2307bp|location=Sequence derived from alignment at CM002464.1:995191..997497+ (Nannochloropsis gaditana)
atggtgaatGGGATGCTGGAGTTGACGGGGCAAAAGGAAGATGTGGATGG
GTACTACCGAGAAAAGTTTGAGAATGCGAagaaggcgtgggaggcTTGGA
AGAATTatttggaggaaaaagatgcccggaggaaagcggggcgTGAACGA
GCGATGCGTCGGAAGGCGATGGGCTACGATGAGCACAATGACAATTGGAA
AGGACCAAGCtgggtggaaggaagggagggggggagggagggaggaggga
gagggtgggaccGTCAGGGCaccggggtggaggacaagtGGGTGCCGCGG
GCagaaaggggtggaaggggggatgaggaggaggaggagggagaggataa
GGAACTAGAAAATCATTTTTTAGACCGGCTGATGTTCGACTTGGATAAGA
CGCCgggcgcggggaggaggggagggagggagggaggaagggagggagag
aaagagaggggtagggggatagggagggagagcacgCTGGGGGACGATGA
ATTGGATGCCTTGATCCAATCATCTCCTGTCAGCACCCCGCCAGAAGTGG
CTCAGCGTCGAGGTGGAGTAGAGCAGGAAGGTCGAGttggtggaagagga
cgcgggggaggggccgggggaggggccgggggaggaactttgagcgagga
ggagcagaaggaaTTGGACGTGTGGCTGGGAATGATTTCaagtgggagag
ggacctccgcctcctccagtcCTTCTGCATTGTCTCTCTTCAAAGgccct
gcctcgctcccatcctcctcgttcacTCCCTCGCCGGGAATGGGAGGGCA
GCCGCGCCCAAAACCCCCCTCAGGGGCGAAGGGAAAAGACTTTTCGTTGG
AtccggaggaagaaaaagagttGAACGAATGGCTGAATCGCTTCGACGCT
GACTACAAGGAGGGTGCAGATGGCTTGCGGGTTGAGAAAACAAagagcgg
aagggaggagggtactgaaagaggaagggagggaggaagggaaaaggcag
agggggaagacgcggTAGATCGAGAATTAGCTGACTTGTTGACGAAACTG
GAGGCGGCAGAAATCAGTGCTtctgcagggggaggagagaggggggtgAA
GATAAAGGGGGGCGGCGGAACAGCACCACGAATCCCTTCGTTGGGGGTAG
AGGGGGTGGAAGCAGCGGTAGGAGTCGACAGTTTCCTCTCGGAGCTTTAC
CGGCCttcgaaaggaggaaaaagaggaaagaagggggctCAGATTGAAGC
ATCTTCGGGGTTGGACAGCGCGTCTCTGTTAAGGATGGCTCTGGAGGACG
ttgggggccgggggggggaggccgagaTACCTCCCATTTCGTCGAGGAGT
CAGGATGCCAGAATGAATACGGGacacaggggaggggaagaggaagagga
ggacgagcgaAAGAATGACGAGACGCTGCCAGCCTCGGTAAAGAGGCGTC
TATTCGTTAGCCGGACtgttgagggagaggatgaaggggaaaacgagggc
gaagacgagggcggagacgatgaagaggaatggggaggagggagaaggag
cagcgaTCGAGGGCAAACGAGGGAGAACGATTTACTTCTGGGCGCTTACA
GTGAAGATCCCGAAGAAGCTCCGGGTCAgtttttggaggaggggctggag
gaatCTGTCCACTTGGGCCGCCCTAGAGGGGGCGGAATGGGTGGGATGAG
GCAAGGCTACATGTACGATGACCCCttgggtggagggagggagttgatGT
CCCTTAATGCcaggccaggagggaaagggggaagcagggatggaaggaaa
ggagagaaaggagattGGATGCGGGCTTTAGCGGAAGAGAACGTGAACAG
CGGGAATGAGGATATCTTCAATAGTTTTGAGGACGTAGGTGATTTAGAGG
AACTGGAGAAACTTGATACATTGTTTGCAGGCGAAGTTGGCCAGAAAGGc
gaaatggaaggaaagaTAAGAAAGAACCGGGTCAAGAGGAACGAGGATGA
ATGGGGGTCATTGTTAGATGAAGTGGATTTGGGAGAGCTGGATGAATTTG
AAGAAATCGAAAAGCTTGTAAATACGGGTAGAAAAAGACAGGAAGATATT
TACGCGGAGGGGAAGTCAGAAAAGAGGAATTCGAAAGTCCTGGCACCAAC
GGTCGGTggacgcgggagggaaagtacGAGATTGTCACCTTCGATGATTG
AGGGAATGAAGGTGGTAGATCTGCGGGCGGAATTGAGGGCTATGGGCCTA
ACAGTGAGCGGTTCTAAGGCAGACCTTCAGGCGCGTCTCGTACGAGCCAC
ACAGTAA

Synonyms

Publications