rna5025, rna5025 (mRNA) Nannochloropsis gaditana

Overview
Namerna5025
Unique Namerna5025
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length306
Alignment locationCM002464.1:953030..953353 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100546g3.2626.mrna
Orig protein idgnl|cribi|Naga_100546g3.2626
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:953030..953353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100546g3gene4853Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5025rna5025-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25659.1cds5013Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5025 ID=rna5025|Name=rna5025|organism=Nannochloropsis gaditana|type=mRNA|length=306bp
ATGGCCTGGTTCAACAGCAAGCTTCGGTTGCTTCTCGAACCTATAAACTT
TAATGGAGGAGGCCAAAAGCAATGTTATTTCTCACACAGTGCTCCAAAAG
CGTCTTCGCAGACGTGTCATTGTGACAGAAGGCCCTGCTGCCGTACCACT
CGGATAATGAGCTGGCACAGACGGCAACTTCAGGATGCAGGCGATGTACT
TTGGTTTAAACTTCTCATATTACGTGAACGCGCATTATATTTTTCAACCT
CGAAAGGCCATATCTTTGGGGCGATTTACTCGGGTCGGAGGAACGGAATC
GATTAA
back to top

protein sequence of rna5025

>rna5025-protein ID=rna5025-protein|Name=rna5025|organism=Nannochloropsis gaditana|type=polypeptide|length=93bp
MIRVYFKMNAKDTPETRAAEDGLQISCVPAFSRLKRSLLYQGVTTICTLM
QGNFQPAIYGSPCRCCRRCPLQRLTNCPCFEENLPQRNISTSV
back to top

mRNA from alignment at CM002464.1:953030..953353+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5025 ID=rna5025|Name=rna5025|organism=Nannochloropsis gaditana|type=mRNA|length=324bp|location=Sequence derived from alignment at CM002464.1:953030..953353+ (Nannochloropsis gaditana)
ATGATACGAGTATATTTTAAGATGAATGTTGCAGCACAGGCATGAAAAAG
AAATGCATGGTAGCTTCAGGCAAAGGACACCCCGGAGACACGTGCCGCGG
AAGACGGGCTTCAGATAAGCTGCGTGCCAGCATTTAGTCGGTTGAAAAGA
TCGCTACTATATCAGGGTGTAACCACTATCTGCACGCTTATGCAAGGGAA
TTTTCAGCCAGCAATTTACGGTTCTCCGTGTCGTTGTTGTCGTCGATGTC
CGCTGCAGAGATTGACGAACTGCCCCTGCTTTGAAGAAAATCTACCACAA
AGAAATATCTCTACCTCTGTCTAG
back to top

Coding sequence (CDS) from alignment at CM002464.1:953030..953353+

>rna5025 ID=rna5025|Name=rna5025|organism=Nannochloropsis gaditana|type=CDS|length=564bp|location=Sequence derived from alignment at CM002464.1:953030..953353+ (Nannochloropsis gaditana)
ATGATACGAGTATATTTTAAGATGAATGCAAAGGACACCCCGGAGACACG
TGCCGCGGAAGACGGGCTTCAGATAAGCTGCGTGCCAGCATTTAGTCGGT
TGAAAAGATCGCTACTATATCAGGGTGTAACCACTATCTGCACGCTTATG
CAAGGGAATTTTCAGCCAGCAATTTACGGTTCTCCGTGTCGTTGTTGTCG
TCGATGTCCGCTGCAGAGATTGACGAACTGCCCCTGCTTTGAAGAAAATC
TACCACAAAGAAATATCTCTACCTCTGTCTAGATGATACGAGTATATTTT
AAGATGAATGCAAAGGACACCCCGGAGACACGTGCCGCGGAAGACGGGCT
TCAGATAAGCTGCGTGCCAGCATTTAGTCGGTTGAAAAGATCGCTACTAT
ATCAGGGTGTAACCACTATCTGCACGCTTATGCAAGGGAATTTTCAGCCA
GCAATTTACGGTTCTCCGTGTCGTTGTTGTCGTCGATGTCCGCTGCAGAG
ATTGACGAACTGCCCCTGCTTTGAAGAAAATCTACCACAAAGAAATATCT
CTACCTCTGTCTAG
back to top
Synonyms
Publications