rna5024, rna5024 (mRNA) Nannochloropsis gaditana

Overview
Namerna5024
Unique Namerna5024
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length897
Alignment locationCM002464.1:952560..952922 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100546g2.2629.mrna
Orig protein idgnl|cribi|Naga_100546g2.2629
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:952560..952922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100546g2gene4852Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5024rna5024-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25662.1cds5012Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5024 ID=rna5024|Name=rna5024|organism=Nannochloropsis gaditana|type=mRNA|length=897bp
ATGTCCTCTTCCCCTACCAGCCCGCACCATGTCACCCGAAATGGGGGCAT
GTGCCCCTCAAGTGATCCTTGTGATCACTTTTCCGAAGAGATTGCCACCC
CTGCATCTCCAATGCCTGAAGCATCCCAATGCGCCGTCCTTTCCCCCGAC
ACAAACACATTGGCTGACGGATCCGCCCAGCAAGGCATCGCAATATTGAA
TGAAGATGCCAGCGTGTCGGGTTTCGGGGAAGTGCAACAAATGGATGTGG
ACAAGGGAAGGGGGAAGGAGGAAGACGCTGTGTGCCGCGTTTGTCATACT
GAAGCCGAACCGACCGAGGGCCGCCCACTTTATCACCCCTGCCTGTGTCG
CGGCTCCATCAAGCACGTGCACCAGGACTGTTTGATGCGATGGCTGCAGG
CGTCCAGCAACACGGCCAAGAAATGTGAATTGTGTGGGGCTTCCTTTGCC
TTCACGGCCTTGTACGCGCCGGGGGCTCCGGCCCAGTTGACCTCGTGGGA
GATGGTGCAAGGACTGATGCGAAAAGGGGCAGCTTTTGTCCCTCGGCTGG
TCAAGGGGGGCGCGCTGTCGTTGTTGTGGCTGGGTGTTCTGCCCTATGTG
ACACAGGGGGCGTTCCAATTCTTTTTTGCGACCAGCTGGGAGGAGGTTGA
AGAGGTGCTCGACGGGGTGGTGGGGAGGTTGATGAGGGTGGAAGGCGGGG
CCGTGGAGACGGGAGGGCGTTTTCTCTGGACCTGTCTGGGCGGCGTGGCG
TTGTGCGTGGGCATTGTCTTGCTGAGTTTGACGGCCCTGAGCCTGCGGGA
TCGGGAAGAGGGGGAGGAGGAGGAGAGGAAGGAAGACGAGGTGATGGTGT
GGACGGGAAAGTTGCCCTCCAGGCTCCTCGTTCCGCAGTCGAGGTAA
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protein sequence of rna5024

>rna5024-protein ID=rna5024-protein|Name=rna5024|organism=Nannochloropsis gaditana|type=polypeptide|length=101bp
MAWFNSKLRLLLEPINFNGGGQKQCYFSHSAPKASSQTCHCDRRPCCRTT
RIMSWHRRQLQDAGDVLWFKLLILRERALYFSTSKGHIFGAIYSGRRNGI
D
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mRNA from alignment at CM002464.1:952560..952922+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5024 ID=rna5024|Name=rna5024|organism=Nannochloropsis gaditana|type=mRNA|length=363bp|location=Sequence derived from alignment at CM002464.1:952560..952922+ (Nannochloropsis gaditana)
ATGGCCTGGTTCAACAGCAAGCTTCGGTTGCTTCTCGAACCTATAAACTT
taatggaggaggccaaaagCAATGTTATTTCTCAGTCAATGGCATGGCGT
GGGACACGATTGTGAATGTGTGAGATAATTGGTATGCGCAGCACAGTGCT
CCAAAAGCGTCTTCGCAGACGTGTCATTGTGACAGAAGGCCCTGCTGCCG
TACCACTCGGATAATGAGCTGGCACAGACGGCAACTTCAGGATGCAGGCG
ATGTACTTTGGTTTAAACTTCTCATATTACGTGAACGCGCATTATATTTT
TCAACCTCGAAAGGCCATATCTTTGGGGCGATTTACTCGGGTCGGAGGAA
CGGAATCGATTAA
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Coding sequence (CDS) from alignment at CM002464.1:952560..952922+

>rna5024 ID=rna5024|Name=rna5024|organism=Nannochloropsis gaditana|type=CDS|length=612bp|location=Sequence derived from alignment at CM002464.1:952560..952922+ (Nannochloropsis gaditana)
ATGGCCTGGTTCAACAGCAAGCTTCGGTTGCTTCTCGAACCTATAAACTT
taatggaggaggccaaaagCAATGTTATTTCTCACACAGTGCTCCAAAAG
CGTCTTCGCAGACGTGTCATTGTGACAGAAGGCCCTGCTGCCGTACCACT
CGGATAATGAGCTGGCACAGACGGCAACTTCAGGATGCAGGCGATGTACT
TTGGTTTAAACTTCTCATATTACGTGAACGCGCATTATATTTTTCAACCT
CGAAAGGCCATATCTTTGGGGCGATTTACTCGGGTCGGAGGAACGGAATC
GATTAAATGGCCTGGTTCAACAGCAAGCTTCGGTTGCTTCTCGAACCTAT
AAACTTtaatggaggaggccaaaagCAATGTTATTTCTCACACAGTGCTC
CAAAAGCGTCTTCGCAGACGTGTCATTGTGACAGAAGGCCCTGCTGCCGT
ACCACTCGGATAATGAGCTGGCACAGACGGCAACTTCAGGATGCAGGCGA
TGTACTTTGGTTTAAACTTCTCATATTACGTGAACGCGCATTATATTTTT
CAACCTCGAAAGGCCATATCTTTGGGGCGATTTACTCGGGTCGGAGGAAC
GGAATCGATTAA
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Synonyms
Publications