rna5021, rna5021 (mRNA) Nannochloropsis gaditana

Overview
Namerna5021
Unique Namerna5021
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length557
Alignment locationCM002464.1:947046..948721 +

Link to JBrowse

Properties
Property NameValue
ProductNicotinamide N-methyltransferase, putative
Orig transcript idgnl|cribi|Naga_101014g2.2730.mrna
Orig protein idgnl|cribi|Naga_101014g2.2730
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:947046..948721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101014g2gene4849Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5021rna5021-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25663.1cds5009Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5021 ID=rna5021|Name=rna5021|organism=Nannochloropsis gaditana|type=mRNA|length=557bp
ACGTACAGGAAGTAAATCAGGCTGCTCGGACATCGCACCCATGTCGCGAT
GCATGACAGGCCCATGGTTGGAGCGGCCGGCCTTCATACGGACAAGCCCG
GATTTTTTCTGATCAGTGCTAGTTTTGACGGCCAACAAGACGATGATGAA
GGATGGGCAATTTCCGACGTCACAGAACGCCTTGGACGGGAGATTTCGAC
GTGCAAGAGCGGTTTTGAAGACATGCGTCCATGCCCCGCAGGCAAATGGA
ACCGGAGGGCCTGGGGTGGAGACTTTGACCATCGCTTCCATTTTGCAATC
GACCTCCTCCTCCTCCTTCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTTGCCCCACCCCTCCTCTCCATTCCCCCGCCGGCCACTGCTC
GGCATCCTCAGGTCCGAAAAAGTGTCGCTCGCCTTTCTCCCCCTGCCTAT
GCGGGATTCCGGAGGACTGCCCTGGTCGTTGTATTTGGAGGATGACACCG
CTTCCGTGCGTGCCGTTTTCACCGTCGACAAGCTCCCTCCGATAGCGGCG
CTCGAGG
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protein sequence of rna5021

>rna5021-protein ID=rna5021-protein|Name=rna5021|organism=Nannochloropsis gaditana|type=polypeptide|length=216bp
MGLALLWTDSHNRSQHSPRKSCGGCPSTVDVRAAALTTSPPGPEASSSSS
SSSSLPSLPPCPPPSFPPPYTVCLTDGHSACVSSLRRCLERNQASFSPHI
SVQAHQLLWTDTIGSPPNLLEGHKPASFDLIVGADVLFFERFHDALLKTL
SVYLNPAGGEVWLLQPSRGGSLERFVSRSQEQGGWEASHTNVVGHRHSPD
TDALVLLKLRRRQGSP
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mRNA from alignment at CM002464.1:947046..948721+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5021 ID=rna5021|Name=rna5021|organism=Nannochloropsis gaditana|type=mRNA|length=1676bp|location=Sequence derived from alignment at CM002464.1:947046..948721+ (Nannochloropsis gaditana)
TGAGTGCAGATTATGCCCATCTACGAAATACAgccaacctcctgcctcct
gtgTGCACCGAGTGTAAGAAAGCCATGAGCCCATCTCTCATACACAATAT
GTTCCTTCAGGTCCATTCCCATGGCAGATCTTCCTCCTGTaagaagaaga
tgggcaCTTCTGCGACGAGCCGTCCGTACTGCATCCAGTAAAGccccttt
gtcctcccctgtcccatCTCCACCCTCGCCTCACCTGCCCTCCCGACGGG
ACGAATTTGAAACGTACACAGTACCCTCACCATGCGCGTGTTTTGCCGAC
ATGAcactctccatcccccttaTACGCCCTCATTGCTCCAAGCGCTCTAC
GTCATGGGCAGCTCTGGTATCGCATCGTCCTGAGTATGCTGGAGTGGATA
ACACAGGCAACGTCTTAATTTGGCcggcggagaaagccttAATGTCTCTA
CTGCTGTCAGAATGTAAGTGTTGAAGCGGAGCGTGTCAGCACGTCCACTT
GCTTTGTGTGGACGGTGCTGGATCAACAAAAGAGGCGGCCCAAGGTTCAT
CTGAATTCGTGTCCTCCTGTGTCGATTCTCTTCCCCCAGACCACGTCGGG
GATTGACGGGGAatatcccttccccttccacggtGTAGAATGTTCACTCC
ACCGTGCACGCAGTCCGACACCACAGGTTTCCCGACTCGCACACGCCCCA
GCGCGTCCTCGAAGTCGGCGCCGGGTGCTCGGGGCTGGCAGGCATGGGGC
TAGCTTTGTTGTGGACCGACAGCCACAACCGTTCCCAACATTCCCCACGA
AAGTCCTGTGGAGGTTGCCCTTCGACCGTTGACGTTAGGGCAGCTGCCTT
GACAACGTCGCCGCCCGGGCCTGAAGCAAGTAGTagttcctcctcttctt
cctcccttccctccctcccgccctgccctccgccctccttcccgcccccc
tacACGGTCTGCCTCACCGACGGCCATTCGGCTTGcgtttcttccctccg
tcgatGCCTGGAACGCAACCAAGCGagcttttccccccacaTCTCCGTCC
AAGCGCATCAGCTCTTGTGGACCGACACCATTGGTTCCCCTCCGAACCTT
CTAGAAGGTCACAAGCCGGCGTCCTTCGACCTCATCGTGGGAGCGGACGT
GCTGTTTTTCGAACGCTTCCATGACGCCTTGCTAAAGACATTGTCCGTGT
ATCTAAAcccggcggggggcgaggtgTGGCTCCTTCAGCCTTCTCGAGGG
GGGTCTCTGGAGAGGTTCGTGAGCCGGTCCCAGGAACaaggcgggtggga
ggcctCCCACACGAATGTGGTAGGACACCGGCACAGCCCCGACACGGACG
CCCTGGTCCTACTCAAGCTCCGACGACGTCAGGGTTCTCCGTGATACCCA
AAATGCCagcgggcgggggctggagaggaagcagggcgcCCAGTAGGTGA
TGAATAGGCCGTCGCGAAACGCGCTACCGAGAGAAGAATGATCCTTCATT
TGTCCCGCCTTGCTATAGAGAAAGCACTCGCCGCCTTTGGGTGGGATTGC
TCCTGGCTTCCAGgacctttcccttcctgtcgtgtctcctcctcgtgtgA
GAAaaaattttaaaaaagacATGTAGCGGCAAgtcccccccaaaaaaaac
cgacttttttttttttttttttccct
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Coding sequence (CDS) from alignment at CM002464.1:947046..948721+

>rna5021 ID=rna5021|Name=rna5021|organism=Nannochloropsis gaditana|type=CDS|length=651bp|location=Sequence derived from alignment at CM002464.1:947046..948721+ (Nannochloropsis gaditana)
ATGGGGCTAGCTTTGTTGTGGACCGACAGCCACAACCGTTCCCAACATTC
CCCACGAAAGTCCTGTGGAGGTTGCCCTTCGACCGTTGACGTTAGGGCAG
CTGCCTTGACAACGTCGCCGCCCGGGCCTGAAGCAAGTAGTagttcctcc
tcttcttcctcccttccctccctcccgccctgccctccgccctccttccc
gcccccctacACGGTCTGCCTCACCGACGGCCATTCGGCTTGcgtttctt
ccctccgtcgatGCCTGGAACGCAACCAAGCGagcttttccccccacaTC
TCCGTCCAAGCGCATCAGCTCTTGTGGACCGACACCATTGGTTCCCCTCC
GAACCTTCTAGAAGGTCACAAGCCGGCGTCCTTCGACCTCATCGTGGGAG
CGGACGTGCTGTTTTTCGAACGCTTCCATGACGCCTTGCTAAAGACATTG
TCCGTGTATCTAAAcccggcggggggcgaggtgTGGCTCCTTCAGCCTTC
TCGAGGGGGGTCTCTGGAGAGGTTCGTGAGCCGGTCCCAGGAACaaggcg
ggtgggaggcctCCCACACGAATGTGGTAGGACACCGGCACAGCCCCGAC
ACGGACGCCCTGGTCCTACTCAAGCTCCGACGACGTCAGGGTTCTCCGTG
A
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Synonyms
Publications