rna5020, rna5020 (mRNA) Nannochloropsis gaditana

Overview
Namerna5020
Unique Namerna5020
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1149
Alignment locationCM002464.1:945916..946828 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101014g3.2732.mrna
Orig protein idgnl|cribi|Naga_101014g3.2732
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:945916..946828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101014g3gene4848Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5020rna5020-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25665.1cds5008Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5020 ID=rna5020|Name=rna5020|organism=Nannochloropsis gaditana|type=mRNA|length=1149bp
GTCTTTACCCGCGCTTTGCCTCACGTCGGGCGCCCTCCGACTCATCTCCC
CTTCCCCCTTACCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTAGAGCTAG
CAGTCCAGCTCCTGCATCTCAAGCCCGAGCGGCGCCGGCGTTTGGAGAGG
GAGCTGAGGGAACGGTGGGCTGCCTTCACGCGAGGGAGGGAGGAAGGGAG
GGAGGGAGGGGGGGAGAGAGGGGGGGATGGTCCGGGCAGACAGGCCATGG
GAGAATGGCTGTGGGCAGAATTATTCCGGGACCCAGCTGAGGGAGCACGG
AGGTTGAGGTAGGTAGGGAGGGAGGGAGGGAGGGAGGGTTACGGTTACGG
TTAGAGGGAGGGAGGGAGGGAGGGAGGCCGGGCGGAATGGAGCGCGCGGG
ACGAAAGGAAATGGTACATCCCTGTGTAGGGAGGCTACGACGCGGCACAT
TACCCCGCGGCCGTGGGGTCTGGGGAATTGGTGATTCCATACTCACAATT
TGGGTGGGCGGACACAGTGCTTTACCACCCCTTAAGCCCAGTCACCTTTC
TTCCTGAACCCGCGGTCCGTCGTGTCGCCCCCGGCCCGTGTTGACCCCTT
CTATCTCGGAAATATCCCTCTCTTTCAAGCATCCCCACCTCCAAATTTTA
AATTTTTTTTGGGGGGGCCGTGGACGCTTTCCTTCCCTCTCATGACCTTC
CCAGGCGACTCGACCTCCTCGTCCACGAAATCCTTTTGAAACAAGGGAAA
GGGCTGCCGACGTCTTCCTCCCCGTTCTTCCACCCTCCTTCCTACGACAT
CAAAACCCGCGGAGGTCATCGGACGACGCGTGCGTCACATATGCCGGCGT
TAAAGGTGGTGCACGTGCAGGAGATGGATGCTTGGTTAGAGACGCATGCC
TTGCTCACGAATGGGGTGTGGGCAAGGGGAAGGAAGGAAGGAGCGAAGTG
CGAAAATGCAACCACATGAGACCGTGAGAGGGGAAGGGAAAAAGTGAAAT
GAGCACAGTGAAAGATGCCTTTGGCTGAGGACGTTGCCTGGCTGATGGTG
AGGAGGGAGGGTGGGATGATGGGGTAAAAGAGAGAAAAAGAGGACCCTGA
CAAGTGTTATAAGAAAAGATGAAAAAAGTACCAGACAATGATACTCTCC
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protein sequence of rna5020

>rna5020-protein ID=rna5020-protein|Name=rna5020|organism=Nannochloropsis gaditana|type=polypeptide|length=148bp
MHDRPMVGAAGLHTDKPGFFLISASFDGQQDDDEGWAISDVTERLGREIS
TCKSGFEDMRPCPAGKWNRRAWGGDFDHRFHFAIDLLLLLHLLLLLLLLL
LLLLAPPLLSIPPPATARHPQVRKSVARLSPPAYAGFRRTALVVVFGG
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mRNA from alignment at CM002464.1:945916..946828-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5020 ID=rna5020|Name=rna5020|organism=Nannochloropsis gaditana|type=mRNA|length=913bp|location=Sequence derived from alignment at CM002464.1:945916..946828- (Nannochloropsis gaditana)
ACGTACAGGAAGTAAATCAGGCTGCTCGGACATCGCACCCATGTCGCGAT
GCATGACAGGCCCATGGTTGGAGCGGCCGGCCTTCATACGGACAAGCCCG
GATTTTTTCTGATCAGTGCTAGTTTTGACGGCCAACAAGACGATGATGAA
GGATGGGCAATTTCCGACGTCACAGAACGCCTTGGACGGGAGATTTCGAC
GTGCAAGAGCGGTTTTGAAGACATGGTGCGTGTACTGCAGGAATTGTGTC
AATACAAGCAGGTTTTTTGTCGGGCATTGCATTTTTTCTGGGGACGATAC
CTCTCCTGGCACCATCCTGTTCCCCCCCTCTTCTTGCCCCATGGTTGTCT
ATTTTCTTCCGCCGTGCACCCACCGTTCCGTCCCAACGCTCTCTCCTTCT
CGCGATAGCTCGATCAGCAAAGCTTTCTGCATGTCTATGTTTCTGCTTCA
AATTTCGTTTGGGGCCTTTCCTTCCCGGTGCCCCCAACCTCCCCGGCCTT
CCCATCGCCTCACGTTGCAAAATGCATACGCTCACCGGGCCACCCATTTC
ATCGCATTCCCGTCCATTACTCTGGACACAGCGTCCATGCCCCGCAGGCA
AATGGAACCGGAGGGCCTGGGGTGGAGACTTTGACCATCGCTTCCATTTT
GCAATCGACCTCCTCCTCCTCCTTCACCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTTGCCCCACCCCTCCTCTCCATTCCCCCGCCGGCCA
CTGCTCGGCATCCTCAGGTCCGAAAAAGTGTCGCTCGCCTTTCTCCCCCT
GCCTATGCGGGATTCCGGAGGACTGCCCTGGTCGTTGTATTTGGAGGATG
ACACCGCTTCCGTGCGTGCCGTTTTCACCGTCGACAAGCTCCCTCCGATA
GCGGCGCTCGAGG
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Coding sequence (CDS) from alignment at CM002464.1:945916..946828-

>rna5020 ID=rna5020|Name=rna5020|organism=Nannochloropsis gaditana|type=CDS|length=894bp|location=Sequence derived from alignment at CM002464.1:945916..946828- (Nannochloropsis gaditana)
CGTCCATGCCCCGCAGGCAAATGGAACCGGAGGGCCTGGGGTGGAGACTT
TGACCATCGCTTCCATTTTGCAATCGACCTCCTCCTCCTCCTTCACCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTGCCCCACCCCTCCTC
TCCATTCCCCCGCCGGCCACTGCTCGGCATCCTCAGGTCCGAAAAAGTGT
CGCTCGCCTTTCTCCCCCTGCCTATGCGGGATTCCGGAGGACTGCCCTGG
TCGTTGTATTTGGAGGATGAATGCATGACAGGCCCATGGTTGGAGCGGCC
GGCCTTCATACGGACAAGCCCGGATTTTTTCTGATCAGTGCTAGTTTTGA
CGGCCAACAAGACGATGATGAAGGATGGGCAATTTCCGACGTCACAGAAC
GCCTTGGACGGGAGATTTCGACGTGCAAGAGCGGTTTTGAAGACATGCGT
CCATGCCCCGCAGGCAAATGGAACCGGAGGGCCTGGGGTGGAGACTTTGA
CCATCGCTTCCATTTTGCAATCGACCTCCTCCTCCTCCTTCACCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTGCCCCACCCCTCCTCTCC
ATTCCCCCGCCGGCCACTGCTCGGCATCCTCAGGTCCGAAAAAGTGTCGC
TCGCCTTTCTCCCCCTGCCTATGCGGGATTCCGGAGGACTGCCCTGGTCG
TTGTATTTGGAGGATGAATGCATGACAGGCCCATGGTTGGAGCGGCCGGC
CTTCATACGGACAAGCCCGGATTTTTTCTGATCAGTGCTAGTTTTGACGG
CCAACAAGACGATGATGAAGGATGGGCAATTTCCGACGTCACAGAACGCC
TTGGACGGGAGATTTCGACGTGCAAGAGCGGTTTTGAAGACATG
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Synonyms
Publications