rna5019, rna5019 (mRNA) Nannochloropsis gaditana

Overview
Namerna5019
Unique Namerna5019
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1210
Alignment locationCM002464.1:944658..945806 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100355g1.9416.mrna
Orig protein idgnl|cribi|Naga_100355g1.9416
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:944658..945806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100355g1gene4847Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25666.1cds5007Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5019rna5019-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5019 ID=rna5019|Name=rna5019|organism=Nannochloropsis gaditana|type=mRNA|length=1210bp
GAGAGAGACTCTGGCGATCTTCAAAGGTAATGCAACCATAAGTAGCCCAC
ACAAAGAAGCAAAAGTAGTTCACACAGACACACCGTTTGGAAGGCATCAT
TGAAATGCGATGGTGGACGTCTTGTCGCACATCAGTGCATCCTTCGCGGC
AGCTTTGTTTGATTGCTAGTGTCCCGGGGATAACCGGCACATACACTCCC
GCTTTGAATGTTCGGAGAACGTGTCCGAAGCAACAAACTTGTGCTGCAGT
GAAAAAGAAAGAAGCCAATCAGATTTACACGCTGTTGATCTGTTTTCCAA
GTTATGTCAACGCATTTTGTCAGGCGTTCAAATAACGTGTTATTCTTGTG
CTACAAATACTTACCCGTCGACGCGGTTATTGCAAGTCACACAGTACATC
GACGCCCAATCTTCGTCCCCTGGTTGAAAACAGATGTGTATTTGGCGATT
TCATGCTGCTATGGAGAGTATCATTGTCTGGTACTTTTTTCATCTTTTCT
TATAACACTTGTCAGGGTCCTCTTTTTCTCTCTTTTACCCCATCATCCCA
CCCTCCCTCCTCACCATCAGCCAGGCAACGTCCTCAGCCAAAGGCATCTT
TCACTGTGCTCATTTCACTTTTTCCCTTCCCCTCTCACGGTCTCATGTGG
TTGCATTTTCGCACTTCGCTCCTTCCTTCCTTCCCCTTGCCCACACCCCA
TTCGTGAGCAAGGCATGCGTCTCTAACCAAGCATCCATCTCCTGCACGTG
CACCACCTTTAACGCCGGCATATGTGACGCACGCGTCGTCCGATGACCTC
CGCGGGTTTTGATGTCGTAGGAAGGAGGGTGGAAGAACGGGGAGGAAGAC
GTCGGCAGCCCTTTCCCTTGTTTCAAAAGGATTTCGTGGACGAGGAGGTC
GAGTCGCCTGGGAAGGTCATGAGAGGGAAGGAAAGCGTCCACGGCCCCCC
CAAAAAAAATTTAAAATTTGGAGGTGGGGATGCTTGAAAGAGAGGGATAT
TTCCGAGATAGAAGGGGTCAACACGGGCCGGGGGCGACACGACGGACCGC
GGGTTCAGGAAGAAAGGTGACTGGGCTTAAGGGGTGGTAAAGCACTGTGT
CCGCCCACCCAAATTGTGAGTATGGAATCACCAATTCCCCAGACCCCACG
GCCGCGGGGTAATGTGCCGCGTCGTAGCCTCCCTACACAGGGATGTACCA
TTTCCTTTCG
back to top

protein sequence of rna5019

>rna5019-protein ID=rna5019-protein|Name=rna5019|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
VFTRALPHVGRPPTHLPFPLTSLPPSFPPSLELAVQLLHLKPERRRRLER
ELRERWAAFTRGREEGREGGGERGGDGPGRQAMGEWLWAELFRDPAEGAR
RLR
back to top

mRNA from alignment at CM002464.1:944658..945806-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5019 ID=rna5019|Name=rna5019|organism=Nannochloropsis gaditana|type=mRNA|length=1149bp|location=Sequence derived from alignment at CM002464.1:944658..945806- (Nannochloropsis gaditana)
GTCTTTACCCGCGCTTTGCCTCACGTCGGGCGCCCTCCGACTCATCTCCC
CTTCCCCCTTACCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTAGAGCTAG
CAGTCCAGCTCCTGCATCTCAAGCCCGAGCGGCGCCGGCGTTTGGAGAGG
GAGCTGAGGGAACGGTGGGCTGCCTTCACGCGAGGGAGGGAGGAAGGGAG
GGAGGGAGGGGGGGAGAGAGGGGGGGATGGTCCGGGCAGACAGGCCATGG
GAGAATGGCTGTGGGCAGAATTATTCCGGGACCCAGCTGAGGGAGCACGG
AGGTTGAGGTAGGTAGGGAGGGAGGGAGGGAGGGAGGGTTACGGTTACGG
TTAGAGGGAGGGAGGGAGGGAGGGAGGCCGGGCGGAATGGAGCGCGCGGG
ACGAAAGGAAATGGTACATCCCTGTGTAGGGAGGCTACGACGCGGCACAT
TACCCCGCGGCCGTGGGGTCTGGGGAATTGGTGATTCCATACTCACAATT
TGGGTGGGCGGACACAGTGCTTTACCACCCCTTAAGCCCAGTCACCTTTC
TTCCTGAACCCGCGGTCCGTCGTGTCGCCCCCGGCCCGTGTTGACCCCTT
CTATCTCGGAAATATCCCTCTCTTTCAAGCATCCCCACCTCCAAATTTTA
AATTTTTTTTGGGGGGGCCGTGGACGCTTTCCTTCCCTCTCATGACCTTC
CCAGGCGACTCGACCTCCTCGTCCACGAAATCCTTTTGAAACAAGGGAAA
GGGCTGCCGACGTCTTCCTCCCCGTTCTTCCACCCTCCTTCCTACGACAT
CAAAACCCGCGGAGGTCATCGGACGACGCGTGCGTCACATATGCCGGCGT
TAAAGGTGGTGCACGTGCAGGAGATGGATGCTTGGTTAGAGACGCATGCC
TTGCTCACGAATGGGGTGTGGGCAAGGGGAAGGAAGGAAGGAGCGAAGTG
CGAAAATGCAACCACATGAGACCGTGAGAGGGGAAGGGAAAAAGTGAAAT
GAGCACAGTGAAAGATGCCTTTGGCTGAGGACGTTGCCTGGCTGATGGTG
AGGAGGGAGGGTGGGATGATGGGGTAAAAGAGAGAAAAAGAGGACCCTGA
CAAGTGTTATAAGAAAAGATGAAAAAAGTACCAGACAATGATACTCTCC
back to top

Coding sequence (CDS) from alignment at CM002464.1:944658..945806-

>rna5019 ID=rna5019|Name=rna5019|organism=Nannochloropsis gaditana|type=CDS|length=312bp|location=Sequence derived from alignment at CM002464.1:944658..945806- (Nannochloropsis gaditana)
GTCTTTACCCGCGCTTTGCCTCACGTCGGGCGCCCTCCGACTCATCTCCC
CTTCCCCCTTACCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTAGAGCTAG
CAGTCCAGCTCCTGCATCTCAAGCCCGAGCGGCGCCGGCGTTTGGAGAGG
GAGCTGAGGGAACGGTGGGCTGCCTTCACGCGAGGGAGGGAGGAAGGGAG
GGAGGGAGGGGGGGAGAGAGGGGGGGATGGTCCGGGCAGACAGGCCATGG
GAGAATGGCTGTGGGCAGAATTATTCCGGGACCCAGCTGAGGGAGCACGG
AGGTTGAGGTAG
back to top
Synonyms
Publications