rna5010, rna5010 (mRNA) Nannochloropsis gaditana

Overview
Namerna5010
Unique Namerna5010
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length315
Alignment locationCM002464.1:924999..925425 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100387g1.62.mrna
Orig protein idgnl|cribi|Naga_100387g1.62
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:924999..925425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100387g1gene4838Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5010rna5010-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25679.1cds4998Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5010 ID=rna5010|Name=rna5010|organism=Nannochloropsis gaditana|type=mRNA|length=315bp
ATGTCATATCCATCAGACAGCGATGTTACATGCAGAGAGACTCGCTTCAA
ATTTTGCTATAACTGCCAACCCGTTTTGTTATACGTGAGCAACATACGAT
GGGTGGATGACGATAAATCGAAACCCACTGACCAGACGAGGGGAATAAAC
GGGAAGACGGAAAAGGGAAAGGCAATAACGTCAAGCGTCCGGGGAGAGGA
GCAGGCCGTAAAACAAGCGTCAACGAAGACACGCAGCAGCACTCGTTATT
GTAGGTACGATGTTCCTTCTTGCCAATACTCTTCTTGTGAACGCGGAGCC
AATGAAGGGAAATAA
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protein sequence of rna5010

>rna5010-protein ID=rna5010-protein|Name=rna5010|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
MHTTPVCPPRASSLRRERRKWELVAGIAVMRDEEREGDEWGGGGGVKGGE
GSFVMGLVGCVNERVQRGKKSNGPCHEKKIGKKRPYVGRHCVALKFLFSF
GRQR
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mRNA from alignment at CM002464.1:924999..925425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5010 ID=rna5010|Name=rna5010|organism=Nannochloropsis gaditana|type=mRNA|length=427bp|location=Sequence derived from alignment at CM002464.1:924999..925425- (Nannochloropsis gaditana)
ATGCATACGACGCCCGTCTGTCCTCCACGCGCCTCCTCTCTTCGGAGAGA
GCGTGTGTGATTGCCCGGTACTTCAAACGAGAGTCCTTCCTCCGCAGGCA
TGGAAGTAGCGACGTAGGAGAAGGAGGGCTGGGAGGAAGCGGTTCCTTCG
GTTGGGGAGCTCTTAGCGAAAGTGGGAGCTCGTTGCAGGCATCGCGGTGA
TGCGAGACGAAGAGAGAGAAGGAGATGAGTGGGGAGGAGGCGGTGGTGTA
AAGGGAGGTGAAGGCAGTTTTGTTATGGGCCTTGTAGGGTGCGTCAACGA
ACGAGTCCAACGAGGGAAGAAAAGCAACGGTCCTTGCCATGAAAAAAAAA
TAGGCAAGAAGCGCCCATACGTTGGCAGGCATTGTGTGGCACTAAAATTC
CTCTTTTCCTTTGGCAGACAGAGGTAG
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Coding sequence (CDS) from alignment at CM002464.1:924999..925425-

>rna5010 ID=rna5010|Name=rna5010|organism=Nannochloropsis gaditana|type=CDS|length=630bp|location=Sequence derived from alignment at CM002464.1:924999..925425- (Nannochloropsis gaditana)
CGAAAGTGGGAGCTCGTTGCAGGCATCGCGGTGATGCGAGACGAAGAGAG
AGAAGGAGATGAGTGGGGAGGAGGCGGTGGTGTAAAGGGAGGTGAAGGCA
GTTTTGTTATGGGCCTTGTAGGGTGCGTCAACGAACGAGTCCAACGAGGG
AAGAAAAGCAACGGTCCTTGCCATGAAAAAAAAATAGGCAAGAAGCGCCC
ATACGTTGGCAGGCATTGTGTGGCACTAAAATTCCTCTTTTCCTTTGGCA
GACAGAGGTAGATGCATACGACGCCCGTCTGTCCTCCACGCGCCTCCTCT
CTTCGGAGAGAGCGTCGAAAGTGGGAGCTCGTTGCAGGCATCGCGGTGAT
GCGAGACGAAGAGAGAGAAGGAGATGAGTGGGGAGGAGGCGGTGGTGTAA
AGGGAGGTGAAGGCAGTTTTGTTATGGGCCTTGTAGGGTGCGTCAACGAA
CGAGTCCAACGAGGGAAGAAAAGCAACGGTCCTTGCCATGAAAAAAAAAT
AGGCAAGAAGCGCCCATACGTTGGCAGGCATTGTGTGGCACTAAAATTCC
TCTTTTCCTTTGGCAGACAGAGGTAGATGCATACGACGCCCGTCTGTCCT
CCACGCGCCTCCTCTCTTCGGAGAGAGCGT
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Synonyms
Publications