rna5009, rna5009 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5009
Unique Name	rna5009
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3082
Alignment location	CM002464.1:924361..924905 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100387g2.58.mrna
Orig protein id	gnl\|cribi\|Naga_100387g2.58
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:924361..924905 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100387g2	gene4837	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5009	rna5009-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25675.1	cds4997	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:924361..924905+
coding sequence from alignment at CM002464.1:924361..924905+

mRNA sequence

>rna5009 ID=rna5009|Name=rna5009|organism=Nannochloropsis gaditana|type=mRNA|length=3082bp
AATGCCATGTTCGTGCCCGACTCACTGATGTGTGCCATGCACGCTCCTCT
ACATAGGGTGATAAGCAGCACGGGGCTGGCATCCGACGGGCGGAGGGAAA
GGGGGGGGGCACGCGCCTCGCTTGGTTATTTTCCATACGTGTCCAGTCCG
TGACAAGCGGTGGGATGCCGTGGGACCAGAATAAGGAGAAAAGGGAGGAC
ACTGCCGGAGACGATGGGAAAAAGACGGCCACGGCCCCCAAGGACAAAGG
ACAGGGGAGCAGCAAGCGGAAACGGGGGCGAAGGGGAGGGAGAGGGCAGG
GACGGGGGCCACGATTGTCATCTGCGCAAGCATTTGCAGCAAACGAGGCG
GGGAATGGAAGACCAGCGCCCTTGCTTTCCTCCGCTTCACCAAGCGGGAC
GGACCGCCGTTTCAAAGAGAGCATGGCTGTACAAGCCCTGGCCCCATCCC
CTCCTAGGGGCCTTGACGAGTCCTCCGTTTTACTACCCACAGAAAGGACA
CGCCCGCGCGACAAGGAAGGAATCAGGAAGCATCCCAAGGAGGGATGGAT
ACAACGAGCGCGGCAGCAGCAGGAGAAACGGGGAGGAGAGCATGCGCGGG
AGGAGGAGGAGGGGAAAGAAGGGTTGCCACCACAATACAGGGAGAGGGGT
ACCCCCACCTCCACCGTGCTCGTCGGCGAGCCTTCCCTCATGGAGGAAGG
TCGCCTGCCTCTCAGAGCTGGGACGGATGCGGCCGGAGGGGGAGGAGGAG
GAAGGGGGGAAGGAGGGGGAGGAAGGGGAGGAGGAGGAGGAGGAAGAGGG
AGCGGGCCGGGAGGATGGAGGGGCCAGAAGGGAAGATTCAGGGAGCAGGG
AGGGCTTGTGGAGCATGTGGCAATCAAGGGAGGTAAAGGCCTTAAACCCG
GCGGGATGGATGCTGCAGGCGTGGCTGAAGGCAGGGCGGAAGGTACCAGG
GGAGAGCGAGGTCCCGGCTGTACCTCCGGGTATGGGACTGCGATGCCTTC
CCTCTCCGTCCCTCCCCGTGTGTACCGTCCCTCGGTCTCCTCCTCCTCGT
CAGCCTCGGACATCTCCCCCCTGACCTCCATGAAGGCGGAGGCGCTGAGT
GGGCCCCGGCAGTTGGTCCTCCTCCTCTTGATCTCCGTCCTTCCCTTTGG
CGGTCACTTCGTGAAGAATTGTTTGACGTCTTTGGAAGTCTACATGGTGA
ACGACGCCCGCCTCCACCTCAGCGAAACCCGGTATGGCCTCTTGCTCTCC
ATGTCCTCCTTGCCCAATTTCTTCATTCCTTTCCTGGGCGGGGTCTTCCT
CGACAAGCGGGGTCACCGGTTCGCCACCCTCCTCTTCCTCTTCCTCGTCC
TCCTCGGCCAATGCCTCTTCACCGTCGCCATCCAACTCGGCTCCTACCCT
TGGGCCCTGGTGGGACGGGTGGTGATGGGCTTGGGCGAAGGGTCCGTGGT
GGTGGCGCAACGGGCCGTGATTTGCCACGTCTTCAAGGCCCAGGCACAGG
TCACTTTCGCCGTCGGCGTCTCGGTCGCCATGGCCTGCCTGAGCAAGACC
CTCTCACGCGCCACCGTCGTCCCCGCCGCGGACCTGCTGGGCGGCTACGT
GGGCGGCCTTTGGTACACGGTGGTCGTCTGCCTCCTCTCCACCTTGGCCG
GTGTCCTCTTCCTCGTCATCTCGGACGAGTCCAAGGAGGACCCCTTCGAA
CGCCGTCGGAGCAGGAGTCAGGCAGGGGGAGGCTCTGGGTGGGGTGCGAA
CGGCCTGCGGGATGCCTACATGGGCCGGTCCGTGGACCCAAGCTGTGGAG
GTAGCGGGGGAGGCGCCGGGGGAGGCGCCGGGGCAGGGAGGGCCGACCTG
TCTCCGGGGTCCTTGGTGGTACATCCGGGTATGGGGGAAGGGGGTCTCCT
CGCTCCCTCCTCCTCCCTGTCGGCCGTATCGCACACCCCCACCTACCAAT
CCATGCTCGCGCTGCGCCGGACCGCTGTATCCCTCTCCGCTTCCTTCTGG
GCCCTGGCTTTCCTCCACTCCGTCTACATCAACGTCTTCCATATCTTCTT
GAACTTCTCGTCCCATTACTTCACGGTGGTTTTCGGGCGGGACGCCAAAT
CAGCGGCTTTCCTCACGTCCTCCGCCTCCGTCCTCGTCATTTTCTTGGGC
CCCTTGGTCGGTTACATCATGGACAAGATGGGGGGACAGCTCTACGTGTG
CACCGCGTCGGCCGCCCTCGTTCTCTATGCCTACATCTCCCTTTCCTTTG
ATCCTGCCCTCGACCCGCTTTACGATATGGTCCTCCTCTCCATCGGCGAG
TCCTTCATCCCCATCCTGGTCATGGCCCTGATCCCTTTCACGGTCCCCCG
CCGGGCGTACGGGACGGCCTACGGCGTCATGGAGGTCTCGGGTGCGCTCT
GTTCCTTTGCAGGTAACGTCCTGATCGGGTATTTGATCGATCAGGGCCGG
CGGGAGGGGAGTGAGTACACGAACGAGTACGAAGTGCCCATGCTCGCGTT
GACGGGACTGGCCGGCCTGGGCTTGCTGGCGTTCCTGGGGCTCACGTTCT
TTGAATTTTGCTGTGGGCACAAGGGATTGAACACGCGCACGGCCATTGAC
TACGAGAGTCTGGCAGGCTTGGATGAGTAGTGGGGTCGAGGGCGGGGGGG
GGGGCAAGAGCCGTCGGGATGTATGGCCTTGGGACTTGTTGGAATGGAGG
AGGTTTTCTTGTCCCCTTGTCAGTTATTGGGGGTCAGAAGGGATACATGG
TGTCGTTATCGCGGGCGTGGGGATGAAACGACGATTGACTGATGTGGTTT
CCCGACTGGTAGAGTGGGAGGGCAGGGGGTTCGCTCCCGTTCTATCTGGC
ACGAGGGAGAGAGCGTAGGATTATTCATGTGACCATTTGTATGAGTAGAA
CTGTCCGCGAGCGAAATGAAGATGTGGAGGAGGCAGGAGTGCCAAAAACG
TACAAAAGATAACGTACGAAAAATCTCGGGCAATTTTAGCCAAGGCACCC
TCCTCACATCGAACAAAAATAGTTTGAGTACGTAGGTAGCTAAGTCTTAA
AGAAGCATAACGAATCATAGGTTACACTGGCT

protein sequence of rna5009

>rna5009-protein ID=rna5009-protein|Name=rna5009|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
MSYPSDSDVTCRETRFKFCYNCQPVLLYVSNIRWVDDDKSKPTDQTRGIN
GKTEKGKAITSSVRGEEQAVKQASTKTRSSTRYCRYDVPSCQYSSCERGA
NEGK

mRNA from alignment at CM002464.1:924361..924905+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5009 ID=rna5009|Name=rna5009|organism=Nannochloropsis gaditana|type=mRNA|length=545bp|location=Sequence derived from alignment at CM002464.1:924361..924905+ (Nannochloropsis gaditana)
ATGTCATATCCATCAGACAGCGATGTTACATGCAGAGAGACTCGCTTCAA
ATTTTGCTATAACTGCCAACCCGTTTTGTTATACGTGAGCAACATACGAT
GGGTGGATGACGATAAATCGAAACCCACTGGTCCATGAGGTAAAATATGC
ACGTGTATTTACGGTAGGTTGTTGGGGAAATTTGGCCGAATGGGAAGCAG
GATAGGCAGCTGCAGCTAGCATGCGTGTTCAACTCGTTGAACGTAGACGG
AAATGGTGTTGGTAGCAACAATGGGACCGCAGGAATGGTCACAAGACTTC
TTCACTTTGATTTTAGGGTGATTCGCAGATGAAAATGTAGGAAAATACAT
ATTTGAAAAGACCAGACGAGGGGAATAAACGGGAAgacggaaaagggaaa
ggcaaTAACGTCAAGCGtccggggagaggagcaggccgTAAAACAAGCGT
CAACGAAGACACGCAGCAGCACTCGTTATTGTAGGTACGATGTTCCTTCT
TGCCAATACTCTTCTTGTGAACGCGGAGCCAATGAAGGGAAATAA

Coding sequence (CDS) from alignment at CM002464.1:924361..924905+

>rna5009 ID=rna5009|Name=rna5009|organism=Nannochloropsis gaditana|type=CDS|length=630bp|location=Sequence derived from alignment at CM002464.1:924361..924905+ (Nannochloropsis gaditana)
ATGTCATATCCATCAGACAGCGATGTTACATGCAGAGAGACTCGCTTCAA
ATTTTGCTATAACTGCCAACCCGTTTTGTTATACGTGAGCAACATACGAT
GGGTGGATGACGATAAATCGAAACCCACTGACCAGACGAGGGGAATAAAC
GGGAAgacggaaaagggaaaggcaaTAACGTCAAGCGtccggggagagga
gcaggccgTAAAACAAGCGTCAACGAAGACACGCAGCAGCACTCGTTATT
GTAGGTACGATGTTCCTTCTTGCCAATACTCTTCTTGTGAACGCGGAGCC
AATGAAGGGAAATAAATGTCATATCCATCAGACAGCGATGTTACATGCAG
AGAGACTCGCTTCAAATTTTGCTATAACTGCCAACCCGTTTTGTTATACG
TGAGCAACATACGATGGGTGGATGACGATAAATCGAAACCCACTGACCAG
ACGAGGGGAATAAACGGGAAgacggaaaagggaaaggcaaTAACGTCAAG
CGtccggggagaggagcaggccgTAAAACAAGCGTCAACGAAGACACGCA
GCAGCACTCGTTATTGTAGGTACGATGTTCCTTCTTGCCAATACTCTTCT
TGTGAACGCGGAGCCAATGAAGGGAAATAA

Synonyms

Publications