rna5002, rna5002 (mRNA) Nannochloropsis gaditana

Overview
Namerna5002
Unique Namerna5002
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1236
Alignment locationCM002464.1:894468..895595 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100327g2.9699.mrna
Orig protein idgnl|cribi|Naga_100327g2.9699
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:894468..895595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100327g2gene4831Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5002rna5002-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25683.1cds4990Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5002 ID=rna5002|Name=rna5002|organism=Nannochloropsis gaditana|type=mRNA|length=1236bp
ATGAAAACTACACGTCATCGTCCTTCCTTCCTCTCTCTTGGTCAAATTTC
TTCCCTCCTTGCCAGCGAACTTAACGGCACGTTATCCGAAAGCTGGTTGC
AGTCCCTCCCGCACACCCGGCGTTTAGAAACCCATGTATGGCACAGTAAG
CGGTACCCTCGAATGCTCGACCGGTGGGGTTACCGGCTCGCCTACGCCCT
CAGTCGCAAGCCCAGCAAGGCTCCTTTGCGGGCCCTGTCGGAGCAATGTT
GCCTGCACGACGCCTCTTACATTCGGGTATTGGAGTTGCAGGCGACTCAT
CGAAAGGACATTTTGACCGTGTTGGCGGCCTTTATGGACCCGAGTGATGC
GACAACCTTGGGGAGCGATGACAAAATGGCGGGAAATCAGATGGGAGAAG
CCATTCTGTACCGGAGGGGAGCTTTCCCCAGTGGGATGTTGGGGCCGGTG
AGGTACTTGTGGAGGCCAAGAGGGAGGGTGGAAGGGTGGGGGAGCGAGTG
GCATGTATGGATATGGGCACATCCTGCCTTTGCGACCCGGTTGAAGGAGG
AATTGGAGGAGGCAACTGGGGGGGAGGGCGGGAGGGAGGGCGGGAGGGAG
GACGGGAAGCGGATGAAGATCAAGCTTGTCCCAGACCTTCTCTTTTTCGA
AATGCGAGGCCCTCTCTCCCGGAGATCGATCGAAATGGCTTGTAGGCCCG
TCTTTCCTTTCAATGCTGGCACTAGGAACGGTTTGGGAGGGGAGGAAGAG
GAGGTGGCGGTAAAGGAAGCGAGAAAGGAGGAAAAGGGGGAGGAATGGCT
GCCGGAAAGGTTAGAACATGGGTCTGTGCTTTGTTTGTCGGTAATTGATC
CGCGGGAAAGGCGAGGAGGGAGGGAAGGAGGGGGGGAACAAGAAAGAGGA
GGAGGAGGAGGGGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGAAGGAAACAGAGGCGCAGAAGGACTTAAAAGGGGAGAAAGTAATA
AGATGCAATTGGAGGGGGGGGCAAAGAAATGGGGGGGAGGGAGGAGGAGG
TGTCGAGGAAGTTGAAATGGAGACAGGCGCGGGAAGTGAGGAGCCACCAG
GCTTGCCGGGCCGCCTCGCTTTCCCCTCCCTGTGGAGGGGGCAGGACCGG
AAAGCAGCGAGAGAACGAGCGCGTCAGCGGCCCGACCACGTCGTAAATGC
CGAGAGGGAACGGAGCAGACGGGCAGAGAGGACCTG
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protein sequence of rna5002

>rna5002-protein ID=rna5002-protein|Name=rna5002|organism=Nannochloropsis gaditana|type=polypeptide|length=299bp
MRERCRSSTAPSPRFACLSSPLPGKRTQHTASPTPLSSAKRKSLKARQNS
LSSPSSPRGMFSSSSSSRVSACSPSSVLERKRSRRDISPSVSSSSSFHLR
QKSKIIKSAVERITDDNNATCLPCKGKRADGAACQRKAKSDCAFGCCLIC
CRKRCDESVIISMATVSPFSACPVHAKLHQQRKEEEALLAQPITAQTSEN
RWGGKETRMRVENGLYKESSIEWVGDTVVIFSLRDFLRSSKWCKDALEQG
LRRRRMRRSEGAEGKEGGRKKEIGGGVEARRTRFEGKIKELILKAGLDI
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mRNA from alignment at CM002464.1:894468..895595+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5002 ID=rna5002|Name=rna5002|organism=Nannochloropsis gaditana|type=mRNA|length=1128bp|location=Sequence derived from alignment at CM002464.1:894468..895595+ (Nannochloropsis gaditana)
CGAAGAAATGCAATTTTAAAATATACTGACACTTCCAACCTTTTCCCACA
GCATGCGTGAGCGTTGTCGCTCATCGACAGCACCTTCTCCCCGGTTTGCC
TGTCTTTCCTCTCCGTTGCCCGGAAAGCGCACTCAACACACCGCTTCCCC
tactcctctttcctctgcgAAGCGCAAGAGTTTGAAAGCACGCCAAAACT
CTCTcagctctccctcttcgccacGCGGAatgttttcttcttcctcctcg
tcgcgtGTCTCAGCCTgttcgccttcctctgtccTCGAAAGGAAGAGGTC
AAGACGTGacatctccccctccgtttcttcctcttcctctttccatctGC
GTCAGAAATCAAAAATCATTAAGTCCGCCGTCGAGCGTATCACGGATGAT
AACAACGCCACCTGTCTACCGTGCAAAGGCAAGCGGGCTGACGGTGCCGC
ATGCCAGCGCAAAGCCAAAAGTGACTGTGCCTTCGGATGCTGCTTGATCT
GTTGTAGGAAGCGGTGCGACGAAAGCGTCATAATTAGCATGGCCACTGTG
TCGCCCTTCTCTGCTTGTCCTGTGCATGCGAAGCTGCACCagcaaaggaa
agaggaagaagctcTGCTTGCCCAGCCTATCACGGCGCAGACGAGTGAAA
ATCGGTGGGGTGGCAAAGAGACGCGGATGCGAGTAGAAAACGGTCTTTAC
AAAGAAAGCTCGATCGAGTGGGTGGGAGACACGGTGGTAATTTTTTCGTT
GCGGGATTTCTTACGGAGTTCAAAATGGTGCAAAGACGCCTTGGAACAAG
GGTTGCGGAGACGGAGAATGAGAAGGAGTGAGGGcgcagaggggaaagag
ggagggagaaaaaaggaaatagGGGGAGGGGTAGAGGCTAGGAGGACGAG
ATTCGAAGGAAAAATCAAGGAACTGATTTTGAAAGCAGGATTGGACATCT
AGATCTTCGGCTGATGTGATACAAGGCGCGTGAGCAGGGGAGGTAGCCGA
GGGAGTAGAAGATATCGTATCACGACCCCAAGGTATGCAACTCGAATAGC
ACAGACAAGAGATAGGCACAGAGGTAGCTGTGAGCGATAAGCTTGCCAAT
CAAAACAAAAGTAGAGTAATCAAACTTC
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Coding sequence (CDS) from alignment at CM002464.1:894468..895595+

>rna5002 ID=rna5002|Name=rna5002|organism=Nannochloropsis gaditana|type=CDS|length=900bp|location=Sequence derived from alignment at CM002464.1:894468..895595+ (Nannochloropsis gaditana)
ATGCGTGAGCGTTGTCGCTCATCGACAGCACCTTCTCCCCGGTTTGCCTG
TCTTTCCTCTCCGTTGCCCGGAAAGCGCACTCAACACACCGCTTCCCCta
ctcctctttcctctgcgAAGCGCAAGAGTTTGAAAGCACGCCAAAACTCT
CTcagctctccctcttcgccacGCGGAatgttttcttcttcctcctcgtc
gcgtGTCTCAGCCTgttcgccttcctctgtccTCGAAAGGAAGAGGTCAA
GACGTGacatctccccctccgtttcttcctcttcctctttccatctGCGT
CAGAAATCAAAAATCATTAAGTCCGCCGTCGAGCGTATCACGGATGATAA
CAACGCCACCTGTCTACCGTGCAAAGGCAAGCGGGCTGACGGTGCCGCAT
GCCAGCGCAAAGCCAAAAGTGACTGTGCCTTCGGATGCTGCTTGATCTGT
TGTAGGAAGCGGTGCGACGAAAGCGTCATAATTAGCATGGCCACTGTGTC
GCCCTTCTCTGCTTGTCCTGTGCATGCGAAGCTGCACCagcaaaggaaag
aggaagaagctcTGCTTGCCCAGCCTATCACGGCGCAGACGAGTGAAAAT
CGGTGGGGTGGCAAAGAGACGCGGATGCGAGTAGAAAACGGTCTTTACAA
AGAAAGCTCGATCGAGTGGGTGGGAGACACGGTGGTAATTTTTTCGTTGC
GGGATTTCTTACGGAGTTCAAAATGGTGCAAAGACGCCTTGGAACAAGGG
TTGCGGAGACGGAGAATGAGAAGGAGTGAGGGcgcagaggggaaagaggg
agggagaaaaaaggaaatagGGGGAGGGGTAGAGGCTAGGAGGACGAGAT
TCGAAGGAAAAATCAAGGAACTGATTTTGAAAGCAGGATTGGACATCTAG
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Synonyms
Publications