rna4997, rna4997 (mRNA) Nannochloropsis gaditana

Overview
Namerna4997
Unique Namerna4997
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1629
Alignment locationCM002464.1:873977..874462 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100279g8.10049.mrna
Orig protein idgnl|cribi|Naga_100279g8.10049
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:873977..874462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100279g8gene4826Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4997rna4997-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25688.1cds4985Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4997 ID=rna4997|Name=rna4997|organism=Nannochloropsis gaditana|type=mRNA|length=1629bp
ATGGTTGCTGTCATGGCTAGCGGGCGCCCGGTTTCATACTCTCCTCCGCC
CCTCCCATTCAAGCCACGCCGCTGCCCTCACCTCCTCTTCCTCCTTGCTT
TTATCCTCGCATCATCATGGATTACGGCCGCTGGCGCTACATGGTCGGGT
ATTAGGCACGTGTCACAGCGTCTGAGTACAAATGTGGTGGATCTAGCACC
TAGGGCTGCGCTTTCTAATGGCAAATCCGATGCCAGCAAAGTCAACAGGG
CCTCGACATCAAGAACTCCGAAGACAGAGACGGCAGCCATCGTCCCCACG
GAAAGCCTCACGAAGCTTCAAAGCTTCTTTCGGCAAAGAAATCAACGTAC
AGAAGGAATAGTCCCGGGCAAAGCCACAGGTGTGCCCCGCGTCACTTTGG
CAAGTCAAGCCACTTCAACTTGTAGCTCCCCGGCGCGGAGAAGAAACCAC
CCCCGGCCCTCCCTCCCTCCCTCCCCCTCCTTTTCCTCGCCCTTGGTCGC
GCTAGCGGCCACAATTAGTGCTCCTTTCCGTCCCAGGAAGGGTCGTGCCG
CTGCCGCCGCCACAGGCAGTCGGTGGTCCCCCTCCTCTGCCCCTCCCTCA
TCCTTTGCATTCTCTTCCTTCCTCCCCACCCTGCCTGCCTTGCACGTCAA
CAAAACCCTTACGTTCTGGGGCAACATGCTGGCGGGTGCCGTGTCTCGTT
CCTGCGCGCAAACCGCCATGCACCCGGCCAACGTGGTGAAGACCCTGTTG
CAAACCAAAGGGGCCGGGGAGCTCGCCAATTTGAACGTCCAAATCTTGAC
CAGAGGGGCGGGGGCCCAATTTGCCCTCTCCCTTCCCCACGGGGCCCTCG
CCTTCGCCGTCTTGGAGGCCACGAAGAGCACGCTGTCCTCCTGGTTCCCG
GTCAATTTTGCGGGCCCTGCCTTCGACTTTGTTTCCTCGGCGGTCTCCAC
CACCATCTGCTCCGTCATCAGCACGCCCCAAATGGTCCTCACGGACCGGA
TCATGGCCGGCTACTACCCAAACCTGGTGCACGGGGTCCGCACCGTCCTC
AAGACGGACGGGGTGCAGGGGCTGTACGCCGGCTGGTTCGCGGCCCTGGC
GCAAAAAATTCCGAGTTACGGGCTGACTTGGGTGTTTTTCCAGCAACTGA
AAATTGCGCGAAACCGTTGGATGGACCACGAAGCGACGAACGGGGAGAAT
TTCGGGATGGGGGCGTTGGCAGCGGCGGCGACGGTGTGTGTGATGATCCC
TCTGGACACTGTTAAGACCCGCATCGTCACCCAAGCCGCCAACCCCGCGG
CCGGCGTGCACTACAAAGGCGTGTGGGACTGTTTCTCCCGTGTATTGAAG
GAGGAAGGTTTGAAAACGTTCTACGCGCCCTTGGCGCCCAGGTTGGTGAG
CGTGGTGCCCATGATTGGGATCCAATTCGGTGTTTACGAATTTATGAAGC
GGACGATCGCAGGCATGCCGGAAAAGGGCCCCCGGGAGGAAAGGAGGGAG
GGGGGCGGGTGGGACGCCGTCAAGGCCTGGGGTAGGAGAAAAGTCCCGAG
CTTGGCTCCAGAGTCGGACTCACCGCTCTCCCAGCCACCGCTGAGCGAGA
TTTTCGACGAAATTGAGGATGCGAATTAG
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protein sequence of rna4997

>rna4997-protein ID=rna4997-protein|Name=rna4997|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
MEGGREGGREGESAWLAGRRGTLYIGKAYKVEWTWESEEQKCQKDLGTGF
RSSWGHFTGYPGSFLSPPSPHKERHDARRGRESHARMLCRVGGRMQTPCA
LLSFESHPCLTPGVHIREAAPILAGVFAKCKDVAQELKTKMNMTTRLQAG
LPGGVKASPAL
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mRNA from alignment at CM002464.1:873977..874462+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4997 ID=rna4997|Name=rna4997|organism=Nannochloropsis gaditana|type=mRNA|length=486bp|location=Sequence derived from alignment at CM002464.1:873977..874462+ (Nannochloropsis gaditana)
atggaaggagggagggagggagggagggagggagagagtgcgTGGCTTGC
AGGTAGGCGCGGTACACTATACATAGGCAAGGCTTATAAAGTGGAGTGGA
CATGGGAGAGCGAAGAGCAAAAATGTCAGAAGGACTTAGGGACAGGATTT
AGGTCGTCGTGGGGGCACTTTACAGGTTACCCCGGGtcattcctctctcc
tccctcgccccacAAGGAAAGACATGATGCAAGGCGTGGGCGTGAGAGCC
ACGCGAGGATGTTGTGTCGGGTGGGTGGTAGGATGCAGACACCTTGTGCC
CTGCTTTCGTTTGAAAGTCATCCATGCTTGACACCCGGCGTACATATTCG
CGAGGCGGCACCCATCCTGGCCGGGGTGTTCGCCAAGTGCAAAGACGTGG
CACAAGAGCTCAAAACGAAAATGAACATGACCACACGTCTCCAAGCCGGA
CTGCCCGGCGGCGTCAAAGCTTCCCCGGCGTTGTGA
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Coding sequence (CDS) from alignment at CM002464.1:873977..874462+

>rna4997 ID=rna4997|Name=rna4997|organism=Nannochloropsis gaditana|type=CDS|length=486bp|location=Sequence derived from alignment at CM002464.1:873977..874462+ (Nannochloropsis gaditana)
atggaaggagggagggagggagggagggagggagagagtgcgTGGCTTGC
AGGTAGGCGCGGTACACTATACATAGGCAAGGCTTATAAAGTGGAGTGGA
CATGGGAGAGCGAAGAGCAAAAATGTCAGAAGGACTTAGGGACAGGATTT
AGGTCGTCGTGGGGGCACTTTACAGGTTACCCCGGGtcattcctctctcc
tccctcgccccacAAGGAAAGACATGATGCAAGGCGTGGGCGTGAGAGCC
ACGCGAGGATGTTGTGTCGGGTGGGTGGTAGGATGCAGACACCTTGTGCC
CTGCTTTCGTTTGAAAGTCATCCATGCTTGACACCCGGCGTACATATTCG
CGAGGCGGCACCCATCCTGGCCGGGGTGTTCGCCAAGTGCAAAGACGTGG
CACAAGAGCTCAAAACGAAAATGAACATGACCACACGTCTCCAAGCCGGA
CTGCCCGGCGGCGTCAAAGCTTCCCCGGCGTTGTGA
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Synonyms
Publications