rna4994, rna4994 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4994
Unique Name	rna4994
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2941
Alignment location	CM002464.1:865694..866205 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100279g5.10055.mrna
Orig protein id	gnl\|cribi\|Naga_100279g5.10055
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:865694..866205 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100279g5	gene4823	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4994	rna4994-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25694.1	cds4982	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:865694..866205-
coding sequence from alignment at CM002464.1:865694..866205-

mRNA sequence

>rna4994 ID=rna4994|Name=rna4994|organism=Nannochloropsis gaditana|type=mRNA|length=2941bp
GCATGACGACGTATTTTGTCAGTTACATGACTGGACTTTTTTCTCATGTG
CACTGTTTGTTGTCATCTTTTTCCTCAAATCATCGCTCGCCTCCCCCCTC
CTTCTCCGCTACGCAACTTATCCGCCTACACACGCGAACAGCCGACACTC
ATGGCGGGCGAGGACTATGAGCATCATTACAGTGATGTTCCCATCGACGA
AGAGCTGAAGGGATACATTTCGGAAGGACGCACCGACTGGGAAGAGCCCG
TTTACGAACCGGACTTCTCGACAGCCATCGTGGTGGATAACCTACCGAAA
GTATCTCGTGAGAAGTATGACAGGCTGATGGTGTTTGTTCGGAAGATCTA
CGATCAAGTGGGGAAAATTGCTGAGGACGGCTTGCAAATGCCTCTGGACG
AGGCGACTGGTATGACCCTCGGATTCGCCTTCATTAATTTCCTGACCCGG
GATTCGGCGGAGAAGGCCATCGCGGCCACCAACAATTGGAATTTGGATAA
GGCGCATGCATTGAAAGTCAACAGCTATGTGGACCTCGTCAAGACCACGA
CACATCCGGAGACGTACACCCCGGAACCCGCGCGGCCTTTGACCACCGTC
CCCGGATTGTACGACTGGCTGAAGGATGCGCAATATCGTGATCAATTTGT
CGTGCGGCACGGGCGGGACACAGAGGTCTATTGGGCCGAGCCAGGAGGGA
CGCCCGAGCTGGTGTACGGTGGAGAACGGGAGAAGGCGATGGGCCAGGGG
AGGTATTGGTGTGATCAGTACGTGACGTGGAGCAAAACAGGCGCGTACCT
CTTAACCTATCACCGGCAAGGAGTCGCGCTTTGGGGGGGGCCGAAATTCG
AAAAAGTCGCCCGCCTCGCGCACCATGGGGTGGCCTTGGCGCAGTTTTCC
AACACAGACAGGTACCTGGTCACGTATTCCTACCCGGACGACGGGCCCGG
CCATGTGGTGGTGTGGGACGTGGAGCGTTCCATCTCGATCCAGGAGCAAG
TCGCCCTCCGCTCGTGGCCAGTGGAGCCCTTTGGGAAGGGGAATCATTTC
AAGTGGTCGCACGACGACAAGTACATCGCGGTGGGGAAAAGCAAATACCT
CCGGAACCCCCAGGCCGCCCAGGCGGGGTTGGATGAGAGTGGAGGTGGGG
GGGCAGGGCACGTCAAGCAGGGCAGCACGGGGGCGGGCGTGGGGGAGGGA
GGGCCGGAGGACGGCGAGGGGCAAATATCAGTGTTTGAGGCCCCAAGTAT
GGAGCTGTTGGACCGGAAATCCATCCGTGCGGAGGGCCTCCGGGGGTTCG
ACTGGTGCCCAAAGGACAATTTGATTGCCTACTGGGCCCCGGAGCGGCAG
CAGCAACCTGCCCGGGTAGTCCTTGTGGAGCTCCCGTCCAAGAAAGAGGT
GCGGCGTAAGCCCTTGTTCTACGTGGAGGACTGCGAACTCACGTGGCAGA
ACGAAGGGGAATACCTGTGCGCCCAGGTGACGCACAAAAAGCGCCAGTCC
AAGAAGAAAGTCAGCCTGGAGCTCTTCCGCGTCAAGGAGGCAGGCATCGC
CTTGGAAATGGTGGAAATCGACGCCACGCCCGTTCGAGACTTCGCCTGGG
AGCCTGCCGGGCACCGCTTTGCCATCATCCATGGGGACGACGCGAACAGC
TACCGGTTCTCTGTCTCCTTCTACTCCATGATCCACCCCACGACGGGCCA
GAAGGAGGTGACCCTTCTCTATCGTTTGGAGGGGCAGAAAGCGCGCCCAG
TCAACAAGCTCTTGTGGTCTCCCAACGGCTCCATCATTGTCCTGGCCAAA
CTTGCGGAAGCCAGTTCGTTGGAATTTTACGACGTGGACTCTCACAGTAC
GCTCGCCAAACGCGATGACCTGTCTCGGATCGATTATTTGAAATGGGATC
CCTCGGGCCGTTACTTGACCGACGCGATCCAGCAGCCGATGGGAAATTCC
TACTACAAGTACTCGTACGACAACGGCTTCCGGATGTGGACGTTCCAAGG
GACGTTGATCGCGCACGTGGAGAAGAATCAATTTTACATGTTCCAATGGC
GGCCTCGCCCGCCTTCCCTGTTGACGGCGGAACAGCAGAGAAAGGTCAAG
AAAGACTTGCGAAAATACGAAAGGAGGTTTGACAAGGAGGACCGGGAGAA
GGAGATGAACAAGAAGAAAGAAGAGTGGCGGAAAAAGGGGGCGCGGCGGG
CAGAGTTCAGGGCTTTCTACGCGACCCGACTGGCGGAATTTCAGGCCCGA
AAGGCCGAGTTGGTGGCGCTGCAGAAGGGATACGACGACGAGGAGCTTGA
GAACTATGAAATCCGAGTGGTAACGCGGAGGATGGTGCCTTTGGGAGACC
CGGAGCTTGCGGGTTAGGAGAAAAGAAAGAGGAAAACAGGTGATGGGAAA
GATGAACGAAAGCGCACAAAATCTAGTCTCTTGTTCTATCATATCGGTCC
ATAATGTGTCATTAGGTCATTCGAGAATATTTTGTTGCACATCAACCTTG
TGAGTTAATTGCAGTCTATTTAAGTCTTGCACTTTTAGGGAAGTCTAGAT
GCATGCTATGGACATGACCACAGACATCCTCAAGGGTCCTTAATTTCCAC
ACGAAGCCTTCCTTCACAACGCGATGTTTTGACGTCGCTTTCTTCGAATG
ACTCTCTCACTCCGATGGCGGACAACGTCGTCGCCACCCCTCTCCGCACC
TCTCCCGCGGTCATCAAGACGTGGTCGGGGTTGGGGTCGACGTGGCTGTG
GGAGCGCCTGCTGGTGCTGACTGGGTGGGTGGAGACTAAACAGCTCCAAT
TCCTTCCCTGGTTGCCTCAAGACGCCTCTCTTATCCTCTTCATGCTGCGC
GTCTCGAGCGTTCCCACTTCGCGTCGCTTCTTCGCCCTCGGACGCACAGG
CAAGGCGATAAGCCCGTACCTCATCCGTTAATGCACTCACC

protein sequence of rna4994

>rna4994-protein ID=rna4994-protein|Name=rna4994|organism=Nannochloropsis gaditana|type=polypeptide|length=149bp
MEAIWRRGRVKAFLWRWIERQYRRREGKLVSALTDEVRAYRLACASEGEE
ATRSGNARDAQHEEDKRGVLRQPGKELELFSLHPPSQHQQALPQPRRPQP
RPRLDDRGRATSKHRVVKEGFVWKLRTLEDVCGHVHSMHLDFPKSARLK

mRNA from alignment at CM002464.1:865694..866205-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4994 ID=rna4994|Name=rna4994|organism=Nannochloropsis gaditana|type=mRNA|length=512bp|location=Sequence derived from alignment at CM002464.1:865694..866205- (Nannochloropsis gaditana)
ATGGAGGCTATCTGGCGGCGGGGGAGGGTCAAGGCTTTCCTATGGCGGTG
GATTGAGAGGCAGTATCGACGGCGGGAGGGAAAATTGGTGAGTGCATTAA
CGGATGAGGTACGGGCTTATCGCCTTGCCTGTGCGTCCGAGGGCGAAGAA
GCGACGCGAAGTGGGAACGCTCGAGACGCGCAGCATGAAGAGGATAAGAG
AGGCGTCTTGAGGCAACCAGGGAAGGAATTGGAGCTGTTTAGTCTCCACC
CACCCAGTCAGCACCAGCAGGCGCTCCCACAGCCACGTCGACCCCAACCC
CGACCACGTCTTGATGACCGCGGGAGAGGTGCGGAGAGGGGTGGCGACGA
CGTTGTCCGCCATCGGAGTGAGAGAGTCATTCGAAGAAAGCGACGTCAAA
ACATCGCGTTGTGAAGGAAGGCTTCGTGTGGAAATTAAGGACCCTTGAGG
ATGTCTGTGGTCATGTCCATAGCATGCATCTAGACTTCCCTAAAAGTGCA
AGACTTAAATAG

Coding sequence (CDS) from alignment at CM002464.1:865694..866205-

>rna4994 ID=rna4994|Name=rna4994|organism=Nannochloropsis gaditana|type=CDS|length=900bp|location=Sequence derived from alignment at CM002464.1:865694..866205- (Nannochloropsis gaditana)
CGACGTCAAAACATCGCGTTGTGAAGGAAGGCTTCGTGTGGAAATTAAGG
ACCCTTGAGGATGTCTGTGGTCATGTCCATAGCATGCATCTAGACTTCCC
TAAAAGTGCAAGACTTAAATAGATGGAGGCTATCTGGCGGCGGGGGAGGG
TCAAGGCTTTCCTATGGCGGTGGATTGAGAGGCAGTATCGACGGCGGGAG
GGAAAATTGGTGAGTGCATTAACGGATGAGGTACGGGCTTATCGCCTTGC
CTGTGCGTCCGAGGGCGAAGAAGCGACGCGAAGTGGGAACGCTCGAGACG
CGCAGCATGAAGAGGATAAGAGAGGCGTCTTGAGGCAACCAGGGAAGGAA
TTGGAGCTGTTTAGTCTCCACCCACCCAGTCAGCACCAGCAGGCGCTCCC
ACAGCCACGTCGACCCCAACCCCGACCACGTCTTGATGACCGCGGGAGAG
CGACGTCAAAACATCGCGTTGTGAAGGAAGGCTTCGTGTGGAAATTAAGG
ACCCTTGAGGATGTCTGTGGTCATGTCCATAGCATGCATCTAGACTTCCC
TAAAAGTGCAAGACTTAAATAGATGGAGGCTATCTGGCGGCGGGGGAGGG
TCAAGGCTTTCCTATGGCGGTGGATTGAGAGGCAGTATCGACGGCGGGAG
GGAAAATTGGTGAGTGCATTAACGGATGAGGTACGGGCTTATCGCCTTGC
CTGTGCGTCCGAGGGCGAAGAAGCGACGCGAAGTGGGAACGCTCGAGACG
CGCAGCATGAAGAGGATAAGAGAGGCGTCTTGAGGCAACCAGGGAAGGAA
TTGGAGCTGTTTAGTCTCCACCCACCCAGTCAGCACCAGCAGGCGCTCCC
ACAGCCACGTCGACCCCAACCCCGACCACGTCTTGATGACCGCGGGAGAG

Synonyms

Publications