rna4993, rna4993 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4993
Unique Name	rna4993
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2692
Alignment location	CM002464.1:863179..866119 +

Link to JBrowse

Properties


Property Name	Value
Product	eukaryotic translation initiation factor 3
Orig transcript id	gnl\|cribi\|Naga_100279g4.10052.mrna
Orig protein id	gnl\|cribi\|Naga_100279g4.10052
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:863179..866119 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100279g4	gene4822	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4993	rna4993-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25691.1	cds4981	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:863179..866119+
coding sequence from alignment at CM002464.1:863179..866119+

mRNA sequence

>rna4993 ID=rna4993|Name=rna4993|organism=Nannochloropsis gaditana|type=mRNA|length=2692bp
AACCCCACAGCGAAAACAACAATGGCTTTAGATATCGGTGGGAGAGTCGA
GGACACCAAGCGTTTTTACCGCCCAAAGTCGACCAACCACATTGTTTTCA
ATGCGGTGATGAAACATTCGTGTGGGATTTTTTTTAAATGATAGGCGTCG
CCATTTGTTAAATTTTTGCGTAGTTTTGGCATGTCTTGCTTGTGTGTTTC
GGTAACGCCCCTTCGGCCTCATATGCCGTGCGGGAAGAAAAACACGACAC
GGGCTCAAAACGACCCGGGCTCAAAACGACCACTATCAATGTTTCAAAAT
TTTCAACTACAATACTTTCCGCTCTGCTCTGAGTCCTTTCCCTCTCGGTG
AGCCTCGTGGTGCCAACCCCCCGTTAATGATCCTCCCTCGTCCTCCTTCA
CCCTTGCTCCTACGTGAGGCTGCCCCGAGAGAGATGCCCTCTCCCTTGCG
CAGCATGCTCGGTTTGGCCTTGATATCCTGGCACTTTGGAATGTGCCGAT
CTGCGGCCTGCTCGTTGAATCGTCGACCGCAGTGAGGACAGGGAATCAGA
TGTTGGTTGGAGTGTCCTGATGCCGCACTGGCAGATGACGCAAGCACAGC
AAGCAATGTGGGGCTCACCGGGCGGCCTTTCCGTTCTGCGTCCGCGATCA
AACGGTTGGCTCTGAGCATGGTCCGGAAATTTTGGGATTGCTCCAACCAT
TTCTTTCCCTGGGAATTGGGTTCAGAGGGAGAGGTTGTCATGGGAGACAA
CGCTTTCCGATGGACGGGCTCCGGATAGGCAGGACGGGAGGATGACCCCG
TGCTGCGCTGGTCATCCTTGTCCTTCCGCGTGGAATGCCTTGTTGCCCGA
TATTCCGACGTCGGCCGGGCAGAGGAAGAGGGCGTGGCCGCCGGGACTTG
TGTGGAAGGTTCACATGGCATGGAGAATCCGTCCTCTGGGGTATCCTCTT
CCTTGCCCCTCTTCTTCTCCCCCTTCTTCCTTCGGCCCACTCCTCGACCA
CAGCGACTGGATGAGGAAGAGGAGGCCTCCGCCTTGGGGCCTGTTCCGGA
CTCGAAGCCACGCAGGCGGTGTTGCCGTGAATTGTATGCAGGGCGGGTGG
AACGGAAGACCTTCTCACACACGCGCTGATGCACTAAAAGGGCCCGTTCG
TTGAATTTTCGGCCGCAGGAAGGACATGGGACTAGGTGGACGGTACCTTG
GGGGGAAGGAGAGGAAGAAAAAGCGGAGGTTGCTTCCTTTTCCTCCTCCT
TGTCCGGTTCCTCCTCCCCTCCGTCTTCGTCGTGCCATCGTGACTGAAAG
CGTGCTGTTCGGGGGACGCTTTTCTGGCCCACACGGGCGTTGGACGACGG
CACACGACCATCTTGGTTCAGGCAAGACCATGTCTTCCCCTTCCCCGTCC
CTACTCCCGGCGCAATTGACTCCTGCGAGTGTGACGGAGGAGAGCAGCGC
GGAGGAGCGGATTTAGTGGGGCGGAGCGGGATGCGGGCAGGGGCGGAGGT
TGGAGAGGAAGAAGAGGAAGGAGAGGATTTACGTTGCTTGAGCTTCGACT
TGAGAAGGGAGAGGGAAGCAGCGGCGGTGGCGTCAGGGGGAAACGGACGC
TCCAAACCTACCCGGACGCTCCAGGAATTTCCCTCAAGCTCAAATCCTGG
CGATTCGACGCCTTTTTCGCAGTCACCGGCTCCCGTGGGGACGTTTTTGA
TGGACCTTGATTTGTGTACCAAAAGGGTATCGCTGTCGTCCTGGTTGTCG
TTGCGATGATTTCCGTGCTTCGCGTCTTTGCCCCTATATCCATCAACTAC
CACCCTTGGCCCATCCCGCGCATGATTGTGAAGTGAAGCAGTCGTGAAAG
ATGCATGTCGCACAGGTGCTCGCGATGGGAAGTGTGTTTTCTTCCTGTGG
AAACCCGCCCCGATGCCAACAGTGGCCTCCTCAGGGGAGACCGCAGGGGA
TGAGGACTGATCCAAACTACCGTGGGATGGGTCCACGTCGGAGTCGCAGT
GTTGTGGGTGAGCTGGAAGCTGGTTGTGGTGTGTGCGGAAGGATGACCAG
AGTGTCTTCCCCATGTCTACGGCCACCCGAGCCGCGAACCGCCCTCCCTC
GTCCGTTCTTTGCTTGGGCAAGTCAAAGTCCTCCTCGGTGTCATCTCGAA
CCGCATAAAAACGAGTATTGCGGCTTGTATTTGCACAGCTGCGGGAGTTT
TGACTTTTGCGAAAACGTTGGGAGTGGCATGACGATGGCTTTCTGTTTGC
CTGCGACGCCGACGGGACCGCGAAGTACAAATTGGCACCAGGAATATCAG
CAGGCATTGTCACTGAGTAGTCCTCCGAGGAATTGCTTCGTCCCTTGGGC
CTGTGTAGGTTTGTTTTCGGTGCGAAGGTGTACGACTCGTCCAATGTCCC
TCCTGTGGCGCGGTCTGCCCGCAACCTATTTCGTGGGACAAACGGGTGAA
AAACTCGTGGAGGTCCATTTCAGTTTGCCTTATATTGCACGTACTTGTTG
GCTTTCTCAATCGCGTCTTTCCTTTTGCTTGCCCATTGTCTGGGGTCAAG
AAATTGAAATTTGGGTGCCATATTTCAGTGCGTTAGAGTTGTTCTATGGC
CCTCCCCCCAAACGGGGAGAGCAGGTAGACGCAACGGTCCAGTGTGAAGC
CCTCAAAAACGGCACTTAAAGGTACCCAATAGGTCCACTGCT

protein sequence of rna4993

>rna4993-protein ID=rna4993-protein|Name=rna4993|organism=Nannochloropsis gaditana|type=polypeptide|length=773bp
MCTVCCHLFPQIIARLPPPSPLRNLSAYTREQPTLMAGEDYEHHYSDVPI
DEELKGYISEGRTDWEEPVYEPDFSTAIVVDNLPKVSREKYDRLMVFVRK
IYDQVGKIAEDGLQMPLDEATGMTLGFAFINFLTRDSAEKAIAATNNWNL
DKAHALKVNSYVDLVKTTTHPETYTPEPARPLTTVPGLYDWLKDAQYRDQ
FVVRHGRDTEVYWAEPGGTPELVYGGEREKAMGQGRYWCDQYVTWSKTGA
YLLTYHRQGVALWGGPKFEKVARLAHHGVALAQFSNTDRYLVTYSYPDDG
PGHVVVWDVERSISIQEQVALRSWPVEPFGKGNHFKWSHDDKYIAVGKSK
YLRNPQAAQAGLDESGGGGAGHVKQGSTGAGVGEGGPEDGEGQISVFEAP
SMELLDRKSIRAEGLRGFDWCPKDNLIAYWAPERQQQPARVVLVELPSKK
EVRRKPLFYVEDCELTWQNEGEYLCAQVTHKKRQSKKKVSLELFRVKEAG
IALEMVEIDATPVRDFAWEPAGHRFAIIHGDDANSYRFSVSFYSMIHPTT
GQKEVTLLYRLEGQKARPVNKLLWSPNGSIIVLAKLAEASSLEFYDVDSH
STLAKRDDLSRIDYLKWDPSGRYLTDAIQQPMGNSYYKYSYDNGFRMWTF
QGTLIAHVEKNQFYMFQWRPRPPSLLTAEQQRKVKKDLRKYERRFDKEDR
EKEMNKKKEEWRKKGARRAEFRAFYATRLAEFQARKAELVALQKGYDDEE
LENYEIRVVTRRMVPLGDPELAG

mRNA from alignment at CM002464.1:863179..866119+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4993 ID=rna4993|Name=rna4993|organism=Nannochloropsis gaditana|type=mRNA|length=2941bp|location=Sequence derived from alignment at CM002464.1:863179..866119+ (Nannochloropsis gaditana)
GCATGACGACGTATTTTGTCAGTTACATGACTGGACTTTTTTCTCATGTG
CACTGTTTGTTGTCATCTTTTTCCTCAAATCAtcgctcgcctcccccctc
cttctccgctaCGCAACTTATCCGCCTACACACGCGAACAGCCGACACTC
ATGGCGGGCGAGGACTATGAGCATCATTACAGTGATGTTCCCATCGACGA
AGAGCTGAAGGGATACATTTCGGAAGGACGCACCGACTGGGAAGAGCCCG
TTTACGAACCGGACTTCTCGACAGCCATCGTGGTGGATAACCTACCGAAA
GTATCTCGTGAGAAGTATGACAGGCTGATGGTGTTTGTTCGGAAGATCTA
CGATCAAGTGGGGAAAATTGCTGAGGACGGCTTGCAAATGCCTCTGGACG
AGGCGACTGGTATGACCCTCGGATTCGCCTTCATTAATTTCCTGACCCGG
GATTCGGCGGAGAAGGCCATCGCGGCCACCAACAATTGGAATTTGGATAA
GGCGCATGCATTGAAAGTCAACAGCTATGTGGACCTCGTCAAGACCACGA
CACATCCGGAGACGTACACCCCGGAACCCGCGCGGCCTTTGACCACCGTC
CCCGGATTGTACGACTGGCTGAAGGATGCGCAATATCGTGATCAATTTGT
CGTGCGGCACGGGCGGGACACAGAGGTCTATTGGGCCGAGCCAGGAGGGA
CGCCCGAGCTGGTGTACGGTGGAgaacgggagaaggcgatgggccAGGGG
AGGTATTGGTGTGATCAGTACGTGACGTGGAGCAAAACAGGCGCGTACCT
CTTAACCTATCACCGGCAAGGAGTCGCGCTTTGGGGGGGGCCGAAATTCG
AAAAAGTCGCCCGCCTCGCGCACCATGGGGTGGCCTTGGCGCAGTTTTCC
AACACAGACAGGTACCTGGTCACGTATTCCTACCCGGACGACGGGCCCGG
CCATGTGGTGGTGTGGGACGTGGAGCGTTCCATCTCGATCCAGGAGCAAG
TCGCCCTCCGCTCGTGGCCAGTGGAGCCCTTTGGGAAGGGGAATCATTTC
AAGTGGTCGCACGACGACAAGTACATCGCGGTGGGGAAAAGCAAATACCT
CCGGAACCCCCAGGCCGCCCAGGCGGGGTTGGATGAgagtggaggtgggg
gggcagggcacGTCAAGCAGGGCAgcacgggggcgggcgtgggggaggga
gggccggaggacggcgaggggCAAATATCAGTGTTTGAGGCCCCAAGTAT
GGAGCTGTTGGACCGGAAATCCATCCGTGCGGAGGGCCTCCGGGGGTTCG
ACTGGTGCCCAAAGGACAATTTGATTGCCTACTGGGCCCcggagcggcag
cagcaacctGCCCGGGTAGTCCTTGTGGAGCTCCCGTCCAAGAAAGAGGT
GCGGCGTAAGCCCTTGTTCTACGTGGAGGACTGCGAACTCACGTGGCAGA
ACGAAGGGGAATACCTGTGCGCCCAGGTGACGCACAAAAAGCGCCAGTCC
AAGAAGAAAGTCAGCCTGGAGCTCTTCCGCgtcaaggaggcaggcatcGC
CTTGGAAATGGTGGAAATCGACGCCACGCCCGTTCGAGACTTCGCCTGGG
AGCCTGCCGGGCACCGCTTTGCCATCATCCATGGGGACGACGCGAACAGC
TACCGGttctctgtctccttctaCTCCATGATCCACCCCACGACGGGCCA
GAAGGAGGTGACCCTTCTCTATCGTTTGGAGGGGCAGAAAGCGCGCCCAG
TCAACAAGCTCTTGTGGTCTCCCAACGGCTCCATCATTGTCCTGGCCAAA
CTTGCGGAAGCCAGTTCGTTGGAATTTTACGACGTGGACTCTCACAGTAC
GCTCGCCAAACGCGATGACCTGTCTCGGATCGATTATTTGAAATGGGATC
CCTCGGGCCGTTACTTGACCGACGCGATCCAGCAGCCGATGGGAAATTCC
TACTACAAGTACTCGTACGACAACGGCTTCCGGATGTGGACGTTCCAAGG
GACGTTGATCGCGCACGTGGAGAAGAATCAATTTTACATGTTCCAATGgc
ggcctcgcccgccttccctgttGACGGCGGAACAGCAGAGAAAGGTCAAG
AAAGACTTGCGAAAATACGAAAGGAGGTTTGACAAGGAGgaccgggagaa
ggagatgaacaagaagaaagaagagtgGCGGAAAAAGGGGGCGCGGCGGG
CAGAGTTCAGGGCTTTCTACGCGACCCGACTGGCGGAATTTCAGGCCCGA
AAGGCCGAGTTGGTGGCGCTGCAGAAGGGatacgacgacgaggagctTGA
GAACTATGAAATCCGAGTGGTAACGCGGAGGATGGTGCCTTTGGGAGACC
CGGAGCTTGCGGGttaggagaaaagaaagaggaaaacaGGTGATGGGAAA
GATGAACGAAAGCGCACAAAATCTAGTCTCTTGTTCTATCATATCGGTCC
ATAATGTGTCATTAGGTCATTCGAGAATATTTTGTTGCACATCAACCTTG
TGAGTTAATTGCAGTCTATTTAAGTCTTGCACTTTTAGGGAAGTCTAGAT
GCATGCTATGGACATGACCACAGACATCCTCAAGGGTCCTTAATTTCCAC
ACGAAGCCTTCCTTCACAACGCGATGTTTTGACGTCGCTTTCTTCGAATG
ACTCTCTCACTCCGATGGCGGACAACGTCGTCGCCACCCCTCTCCGCACC
TCTCCCGCGGTCATCAAGACGTGGTCGGGGTTGGGGTCGACGTGGCTGTG
GGAGCGCCTGCTGGTGCTGACTGGGTGGGTGGAGACTAAACAGCTCCAAT
TCCTTCCCTGGTTGCCTCAAGACGCCTCTCTTATCCTCTTCATGCTGCGC
GTCTCGAGCGTTCCCACTTCGCGTCGCTTCTTCGCCCTCGGACGCACAGG
CAAGGCGATAAGCCCGTACCTCATCCGTTAATGCACTCACC

Coding sequence (CDS) from alignment at CM002464.1:863179..866119+

>rna4993 ID=rna4993|Name=rna4993|organism=Nannochloropsis gaditana|type=CDS|length=2322bp|location=Sequence derived from alignment at CM002464.1:863179..866119+ (Nannochloropsis gaditana)
ATGTGCACTGTTTGTTGTCATCTTTTTCCTCAAATCAtcgctcgcctccc
ccctccttctccgctaCGCAACTTATCCGCCTACACACGCGAACAGCCGA
CACTCATGGCGGGCGAGGACTATGAGCATCATTACAGTGATGTTCCCATC
GACGAAGAGCTGAAGGGATACATTTCGGAAGGACGCACCGACTGGGAAGA
GCCCGTTTACGAACCGGACTTCTCGACAGCCATCGTGGTGGATAACCTAC
CGAAAGTATCTCGTGAGAAGTATGACAGGCTGATGGTGTTTGTTCGGAAG
ATCTACGATCAAGTGGGGAAAATTGCTGAGGACGGCTTGCAAATGCCTCT
GGACGAGGCGACTGGTATGACCCTCGGATTCGCCTTCATTAATTTCCTGA
CCCGGGATTCGGCGGAGAAGGCCATCGCGGCCACCAACAATTGGAATTTG
GATAAGGCGCATGCATTGAAAGTCAACAGCTATGTGGACCTCGTCAAGAC
CACGACACATCCGGAGACGTACACCCCGGAACCCGCGCGGCCTTTGACCA
CCGTCCCCGGATTGTACGACTGGCTGAAGGATGCGCAATATCGTGATCAA
TTTGTCGTGCGGCACGGGCGGGACACAGAGGTCTATTGGGCCGAGCCAGG
AGGGACGCCCGAGCTGGTGTACGGTGGAgaacgggagaaggcgatgggcc
AGGGGAGGTATTGGTGTGATCAGTACGTGACGTGGAGCAAAACAGGCGCG
TACCTCTTAACCTATCACCGGCAAGGAGTCGCGCTTTGGGGGGGGCCGAA
ATTCGAAAAAGTCGCCCGCCTCGCGCACCATGGGGTGGCCTTGGCGCAGT
TTTCCAACACAGACAGGTACCTGGTCACGTATTCCTACCCGGACGACGGG
CCCGGCCATGTGGTGGTGTGGGACGTGGAGCGTTCCATCTCGATCCAGGA
GCAAGTCGCCCTCCGCTCGTGGCCAGTGGAGCCCTTTGGGAAGGGGAATC
ATTTCAAGTGGTCGCACGACGACAAGTACATCGCGGTGGGGAAAAGCAAA
TACCTCCGGAACCCCCAGGCCGCCCAGGCGGGGTTGGATGAgagtggagg
tgggggggcagggcacGTCAAGCAGGGCAgcacgggggcgggcgtggggg
agggagggccggaggacggcgaggggCAAATATCAGTGTTTGAGGCCCCA
AGTATGGAGCTGTTGGACCGGAAATCCATCCGTGCGGAGGGCCTCCGGGG
GTTCGACTGGTGCCCAAAGGACAATTTGATTGCCTACTGGGCCCcggagc
ggcagcagcaacctGCCCGGGTAGTCCTTGTGGAGCTCCCGTCCAAGAAA
GAGGTGCGGCGTAAGCCCTTGTTCTACGTGGAGGACTGCGAACTCACGTG
GCAGAACGAAGGGGAATACCTGTGCGCCCAGGTGACGCACAAAAAGCGCC
AGTCCAAGAAGAAAGTCAGCCTGGAGCTCTTCCGCgtcaaggaggcaggc
atcGCCTTGGAAATGGTGGAAATCGACGCCACGCCCGTTCGAGACTTCGC
CTGGGAGCCTGCCGGGCACCGCTTTGCCATCATCCATGGGGACGACGCGA
ACAGCTACCGGttctctgtctccttctaCTCCATGATCCACCCCACGACG
GGCCAGAAGGAGGTGACCCTTCTCTATCGTTTGGAGGGGCAGAAAGCGCG
CCCAGTCAACAAGCTCTTGTGGTCTCCCAACGGCTCCATCATTGTCCTGG
CCAAACTTGCGGAAGCCAGTTCGTTGGAATTTTACGACGTGGACTCTCAC
AGTACGCTCGCCAAACGCGATGACCTGTCTCGGATCGATTATTTGAAATG
GGATCCCTCGGGCCGTTACTTGACCGACGCGATCCAGCAGCCGATGGGAA
ATTCCTACTACAAGTACTCGTACGACAACGGCTTCCGGATGTGGACGTTC
CAAGGGACGTTGATCGCGCACGTGGAGAAGAATCAATTTTACATGTTCCA
ATGgcggcctcgcccgccttccctgttGACGGCGGAACAGCAGAGAAAGG
TCAAGAAAGACTTGCGAAAATACGAAAGGAGGTTTGACAAGGAGgaccgg
gagaaggagatgaacaagaagaaagaagagtgGCGGAAAAAGGGGGCGCG
GCGGGCAGAGTTCAGGGCTTTCTACGCGACCCGACTGGCGGAATTTCAGG
CCCGAAAGGCCGAGTTGGTGGCGCTGCAGAAGGGatacgacgacgaggag
ctTGAGAACTATGAAATCCGAGTGGTAACGCGGAGGATGGTGCCTTTGGG
AGACCCGGAGCTTGCGGGttag

Synonyms

Publications