rna4992, rna4992 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4992
Unique Name	rna4992
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2664
Alignment location	CM002464.1:860391..863082 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100279g3.10054.mrna
Orig protein id	gnl\|cribi\|Naga_100279g3.10054
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:860391..863082 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100279g3	gene4821	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25693.1	cds4980	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4992	rna4992-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:860391..863082-
coding sequence from alignment at CM002464.1:860391..863082-

mRNA sequence

>rna4992 ID=rna4992|Name=rna4992|organism=Nannochloropsis gaditana|type=mRNA|length=2664bp
ACCCATTTTACGTTGCGCGCGGCCGCCTTCCTCCCTCGGTGTTCACACGA
TTTCTCGTCTTGTCGTATTGCAGGAACAACGGACGATCTGACGGGGTCTC
TTTGTCTGTGCACGGGGTACAAGACACCTTTTATGGCGAAAAGCTCGGCT
TCCTACTTTGGCACCACAGAAGGAAGGAGGTGCCCGCCGCTGGCACGACG
GGACTGCTTGTAAAATCGACGTTTAGCGCCATCCTTGGAGCATAAGACCA
CGAAACTCTCTAAAATAGCATTGATTTAAGCAATTATATTTGATGCGGAA
GGGAAGGATGGCCGCACCTTTGGCACATACGCCGCCTTTTCCGGCGGCTC
AATATCCATGTGCCAACGAAGGAGGTGGAGGCCAAGACGGCAATTCTGCG
AACAATTTACCATACTTCGGACAGCACACGGATTTAAATAGTGCAGAATA
TTGCAAAAGACAACGTGTGTACATGAGCCCAGGTCTGTGGGCGGAGCTTG
ACGCGGACCCACAGCGGGGAGTGGCCTTGATGGACTTGGCGGCGGCTCAA
CAAGCACAAGAAGCTGAGCAGTTCCGGCTCCGACAGCAACAACAACCACA
GCGAGAGCCACAAGGACACGACGGATCAAAAGGTGGTTATTTAGAAGCGC
AGCGAGGGCACATGCAGCATGCCTGGGTGGCGGAAGGGGCAGGGGAGACG
GCCATGGACACGGGCGACGAAGGGAGGGACAAGGAGGAGGACGTGGCCCG
TTTTTTTGCCGATTCTCCGCCAGCAGCCACCGCCACCCGCGCCGACTTTC
CTTCGACACGTACAAATATCTCCACGACCGGCCAGGCCAGGGCGCAGGAC
GATTGGCCCATGCCCACCCCGCCCTTACCCCCCAAGAGTGGACGGAGCGG
GATGGAGCCCTCTAGGGAAGAGCTCTCGGCGCCCCCCCCCGGGGGTCACA
TTAGGAGCAGCAAAACCACGGACGACGTGGTCTCGACAATCTACCGTCCT
TTGCTCATGACGGGCACCACACCCAACTCGACCAGTTCCATTTTCTGCCG
CAACACCGCCTGTAACCCCCACGCGGACCAGATCATCTTGTGCATGGCGA
GCGTCCTCCAAGTACAAATGCTGCACGACAAGGAGGCCGCCAACACCAAC
CAGGCGCTGCGGGACAAGTTTCGGTGTTTCGAGCCCCCCCTTCCTGTGGC
CACAGGGGAGGCAGGCAGCGGGGAGGGCGTGGTGGCCATGGAAGGTCAGG
GGCCCACGGAGAGTCAAGGAGAAGAGGAGGTGACGGTGGAGGAGATCCAC
TGTTTCATCGAAGGTATCTTCAAGCGGGCGCGTTTCTCGCCCGAATGCAA
CATCATTGCCTTGGTTTACATCAATCGGGTCATATCCACGACTTCTTTAC
CCTTGCACGCCCGTAACTGGCGGGCGGTGGTGCTGGTCGCTCTTCTCCTC
GCGCAGAAAGTGTGGGACGACCGTTGCATCGCCCTCTCTTCTTTCTCCCC
GCATTTGCCCGATTTCCCCCTCGAACGGATCCGTTTGGTGGAGCGGAAAT
TTCTGGAGCTGCTCCAGTACCGAGCCACGGTCACCCAGGCCCTCTACACG
CGCTACTACTTCGAACTCCGGGCTTTGTTCGAGAAGCTTCTGGAACAAGA
AAGCATCTCACGAGACTTTCCCCTTAAGCCCATGACCATTTGGCAGGCGC
GCAAGCTGGAGCTGTGCTCGGATTCTTTTGGTCTTTGCATCCGTCAAGCC
TCCAGCAACCTCTCGCCGGTTTCGGCCAATGGGAGCAGCAGCAACAGCAG
CCACCGCTCCTCGGTCGGTTCGTCCGCCGCTGCCAAGGCGACGGGATCCC
TCCCTCAACCGCACAGCCCCGTCGGTCCCTTCGCGCCCGGGGAGAGGGCC
ACGGCGGCAGGGGGGCCCTTACGAGGGATTCCCGCCCTGATGGCTTCCTC
TACCTCTGTCCTCCCCACCCCGCCCAGCTCCCATTCCCTCGCCGCCCGCC
ACGCTTCCTCCATTTCGACCGCCTCCTCCTCCACTGCCTCCTCCTCGTCC
CGGTTTCGAAAACCACGACCCGTGACCTCGGACTTGGCGCGCCGCTCGCC
GTGGACCCCGCTGCCACAGTCTCCGTCCCCGACCTACGAAGACATCACGT
ACACACCCAAAGGCCGCTATGTGCAGAGCTAGGCAGGGGGAGGACGGAAT
ATCCAGGGCGAGGTAATGACCGGAAGGCACCAGGCAAGGAAGGATGGATT
GGACAGGAAGGGGGGATGGGTGTACAGGATGTGTGCTGTGAATGGTAACG
GGATTTCGGGGTTACGGAATTTCGGATGTTTGAAGAGCGACTCTTCAAGG
TAATGCCGAGCGGGGGATTTGCTTCGAGGGTCCGTTCCATGCGATATAAA
ATGTAGAAAAGGGTGACAAAGAGAAAGAGGTATCATAAAAGAGCTGTTGG
GGATGCAAGAAGGGGTTGAGGGGGGGCGACCCGACTCCCGCATAGTGGAC
CGAGACAGAAACAAAGATTGGAGGGATGGGGCGTGAAAGTGCCGCTTCAA
TGATGGAGCGGGGGAGGAAACGTATTAGAGGGGAAAGGATTGTACCTGAA
AAGCGGGAGCGGAGGGGAGGCCACTGACAGCGTCGCAGTGGGACGAAGGC
TGGAAAGGAGGAGG

protein sequence of rna4992

>rna4992-protein ID=rna4992-protein|Name=rna4992|organism=Nannochloropsis gaditana|type=polypeptide|length=272bp
MHVAQVLAMGSVFSSCGNPPRCQQWPPQGRPQGMRTDPNYRGMGPRRSRS
VVGELEAGCGVCGRMTRVSSPCLRPPEPRTALPRPFFAWASQSPPRCHLE
PHKNEYCGLYLHSCGSFDFCENVGSGMTMAFCLPATPTGPRSTNWHQEYQ
QALSLSSPPRNCFVPWACVGLFSVRRCTTRPMSLLWRGLPATYFVGQTGE
KLVEVHFSLPYIARTCWLSQSRLSFCLPIVWGQEIEIWVPYFSALELFYG
PPPKRGEQVDATVQCEALKNGT

mRNA from alignment at CM002464.1:860391..863082-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4992 ID=rna4992|Name=rna4992|organism=Nannochloropsis gaditana|type=mRNA|length=2692bp|location=Sequence derived from alignment at CM002464.1:860391..863082- (Nannochloropsis gaditana)
AACCCCACAGCGAAAACAACAATGGCTTTAGATATCGGTGGGAGAGTCGA
GGACACCAAGCGTTTTTACCGCCCAAAGTCGACCAACCACATTGTTTTCA
ATGCGGTGATGAAACATTCGTGTGGGATTTTTTTTAAATGATAGGCGTCG
CCATTTGTTAAATTTTTGCGTAGTTTTGGCATGTCTTGCTTGTGTGTTTC
GGTAACGCCCCTTCGGCCTCATATGCCGTGCGGGAAGAAAAACACGACAC
GGGCTCAAAACGACCCGGGCTCAAAACGACCACTATCAATGTTTCAAAAT
TTTCAACTACAATACTTTCCGCTCTGCTCTGAGTCCTTTCCCTCTCGGTG
AGCCTCGTGGTGCCAACCCCCCGTTAATGATCCTCCCTCGTCCTCCTTCA
CCCTTGCTCCTACGTGAGGCTGCCCCGAGAGAGATGCCCTCTCCCTTGCG
CAGCATGCTCGGTTTGGCCTTGATATCCTGGCACTTTGGAATGTGCCGAT
CTGCGGCCTGCTCGTTGAATCGTCGACCGCAGTGAGGACAGGGAATCAGA
TGTTGGTTGGAGTGTCCTGATGCCGCACTGGCAGATGACGCAAGCACAGC
AAGCAATGTGGGGCTCACCGGGCGGCCTTTCCGTTCTGCGTCCGCGATCA
AACGGTTGGCTCTGAGCATGGTCCGGAAATTTTGGGATTGCTCCAACCAT
TTCTTTCCCTGGGAATTGGGTTCAGAGGGAGAGGTTGTCATGGGAGACAA
CGCTTTCCGATGGACGGGCTCCGGATAGGCAGGACGGGAGGATGACCCCG
TGCTGCGCTGGTCATCCTTGTCCTTCCGCGTGGAATGCCTTGTTGCCCGA
TATTCCGACGTCGGCCGGGCAGAGGAAGAGGGCGTGGCCGCCGGGACTTG
TGTGGAAGGTTCACATGGCATGGAGAATCCGTCCTCTGGGGTATCCTCTT
CCTTGCCCCTCTTCTTCTCCCCCTTCTTCCTTCGGCCCACTCCTCGACCA
CAGCGACTGGATGAGGAAGAGGAGGCCTCCGCCTTGGGGCCTGTTCCGGA
CTCGAAGCCACGCAGGCGGTGTTGCCGTGAATTGTATGCAGGGCGGGTGG
AACGGAAGACCTTCTCACACACGCGCTGATGCACTAAAAGGGCCCGTTCG
TTGAATTTTCGGCCGCAGGAAGGACATGGGACTAGGTGGACGGTACCTTG
GGGGGAAGGAGAGGAAGAAAAAGCGGAGGTTGCTTCCTTTTCCTCCTCCT
TGTCCGGTTCCTCCTCCCCTCCGTCTTCGTCGTGCCATCGTGACTGAAAG
CGTGCTGTTCGGGGGACGCTTTTCTGGCCCACACGGGCGTTGGACGACGG
CACACGACCATCTTGGTTCAGGCAAGACCATGTCTTCCCCTTCCCCGTCC
CTACTCCCGGCGCAATTGACTCCTGCGAGTGTGACGGAGGAGAGCAGCGC
GGAGGAGCGGATTTAGTGGGGCGGAGCGGGATGCGGGCAGGGGCGGAGGT
TGGAGAGGAAGAAGAGGAAGGAGAGGATTTACGTTGCTTGAGCTTCGACT
TGAGAAGGGAGAGGGAAGCAGCGGCGGTGGCGTCAGGGGGAAACGGACGC
TCCAAACCTACCCGGACGCTCCAGGAATTTCCCTCAAGCTCAAATCCTGG
CGATTCGACGCCTTTTTCGCAGTCACCGGCTCCCGTGGGGACGTTTTTGA
TGGACCTTGATTTGTGTACCAAAAGGGTATCGCTGTCGTCCTGGTTGTCG
TTGCGATGATTTCCGTGCTTCGCGTCTTTGCCCCTATATCCATCAACTAC
CACCCTTGGCCCATCCCGCGCATGATTGTGAAGTGAAGCAGTCGTGAAAG
ATGCATGTCGCACAGGTGCTCGCGATGGGAAGTGTGTTTTCTTCCTGTGG
AAACCCGCCCCGATGCCAACAGTGGCCTCCTCAGGGGAGACCGCAGGGGA
TGAGGACTGATCCAAACTACCGTGGGATGGGTCCACGTCGGAGTCGCAGT
GTTGTGGGTGAGCTGGAAGCTGGTTGTGGTGTGTGCGGAAGGATGACCAG
AGTGTCTTCCCCATGTCTACGGCCACCCGAGCCGCGAACCGCCCTCCCTC
GTCCGTTCTTTGCTTGGGCAAGTCAAAGTCCTCCTCGGTGTCATCTCGAA
CCGCATAAAAACGAGTATTGCGGCTTGTATTTGCACAGCTGCGGGAGTTT
TGACTTTTGCGAAAACGTTGGGAGTGGCATGACGATGGCTTTCTGTTTGC
CTGCGACGCCGACGGGACCGCGAAGTACAAATTGGCACCAGGAATATCAG
CAGGCATTGTCACTGAGTAGTCCTCCGAGGAATTGCTTCGTCCCTTGGGC
CTGTGTAGGTTTGTTTTCGGTGCGAAGGTGTACGACTCGTCCAATGTCCC
TCCTGTGGCGCGGTCTGCCCGCAACCTATTTCGTGGGACAAACGGGTGAA
AAACTCGTGGAGGTCCATTTCAGTTTGCCTTATATTGCACGTACTTGTTG
GCTTTCTCAATCGCGTCTTTCCTTTTGCTTGCCCATTGTCTGGGGTCAAG
AAATTGAAATTTGGGTGCCATATTTCAGTGCGTTAGAGTTGTTCTATGGC
CCTCCCCCCAAACGGGGAGAGCAGGTAGACGCAACGGTCCAGTGTGAAGC
CCTCAAAAACGGCACTTAAAGGTACCCAATAGGTCCACTGCT

Coding sequence (CDS) from alignment at CM002464.1:860391..863082-

>rna4992 ID=rna4992|Name=rna4992|organism=Nannochloropsis gaditana|type=CDS|length=819bp|location=Sequence derived from alignment at CM002464.1:860391..863082- (Nannochloropsis gaditana)
ATGCATGTCGCACAGGTGCTCGCGATGGGAAGTGTGTTTTCTTCCTGTGG
AAACCCGCCCCGATGCCAACAGTGGCCTCCTCAGGGGAGACCGCAGGGGA
TGAGGACTGATCCAAACTACCGTGGGATGGGTCCACGTCGGAGTCGCAGT
GTTGTGGGTGAGCTGGAAGCTGGTTGTGGTGTGTGCGGAAGGATGACCAG
AGTGTCTTCCCCATGTCTACGGCCACCCGAGCCGCGAACCGCCCTCCCTC
GTCCGTTCTTTGCTTGGGCAAGTCAAAGTCCTCCTCGGTGTCATCTCGAA
CCGCATAAAAACGAGTATTGCGGCTTGTATTTGCACAGCTGCGGGAGTTT
TGACTTTTGCGAAAACGTTGGGAGTGGCATGACGATGGCTTTCTGTTTGC
CTGCGACGCCGACGGGACCGCGAAGTACAAATTGGCACCAGGAATATCAG
CAGGCATTGTCACTGAGTAGTCCTCCGAGGAATTGCTTCGTCCCTTGGGC
CTGTGTAGGTTTGTTTTCGGTGCGAAGGTGTACGACTCGTCCAATGTCCC
TCCTGTGGCGCGGTCTGCCCGCAACCTATTTCGTGGGACAAACGGGTGAA
AAACTCGTGGAGGTCCATTTCAGTTTGCCTTATATTGCACGTACTTGTTG
GCTTTCTCAATCGCGTCTTTCCTTTTGCTTGCCCATTGTCTGGGGTCAAG
AAATTGAAATTTGGGTGCCATATTTCAGTGCGTTAGAGTTGTTCTATGGC
CCTCCCCCCAAACGGGGAGAGCAGGTAGACGCAACGGTCCAGTGTGAAGC
CCTCAAAAACGGCACTTAA

Synonyms

Publications