rna4990, rna4990 (mRNA) Nannochloropsis gaditana

Overview
Namerna4990
Unique Namerna4990
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length693
Alignment locationCM002464.1:855868..856662 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100222g10.2408.mrna
Orig protein idgnl|cribi|Naga_100222g10.2408
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:855868..856662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100222g10gene4819Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4990rna4990-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25695.1cds4978Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4990 ID=rna4990|Name=rna4990|organism=Nannochloropsis gaditana|type=mRNA|length=693bp
ATGGCGTTTAATGGCGTGCTTGAAGAGGTGGGGACGGCATCGCCACTAGT
GTCTCCTGGAATTTCTGGCGGTGATATGGACGAGGAAAGTGGTTTGATTG
CTCGACCCAAGCGACTTTCTCGCGGGGTCATTTTGGCGTACCGGAGTGTG
GTAGAGCAGGTCCTCCCTACTTTCGCGGTTGCGTTGCAGCTAGACAAGTC
CACCGGTCTTTCATCAGGAGACGCAGAACATGGAGCTCAAAAATTGAAAG
ATCTGTGGCTCAAAGCGATGAAAGAAAAATTGGGAGTGGACTTGGGAGTA
CTATCCATGTCAGAGGCTACTTTGCCTCTAAATGAAGAAGAGGGGCAGGG
AGGAGCAAGGGAGGACGTGAACCTGCCGAGGGACGGGAGGGTATTAGATG
CAGATCGGGAGAAAGAGGGCGACGACGAGGAGGAGAAGGCAGAAATAATG
GGAGAGGAAGAACGACGGGTGGAGGGTCTGAAGGTGGCGCAAGCTTCCCG
TACCTTTCGATGGCTAAGTCCTCCCCGCCGCCCGTTCCGAGCACCAAATG
ACGGGCTGCGAGGGAATAGTGGAGAGGGAGTGCGCCTTCCGGGGAGGATA
CGGCAAGCGGACAGGCAGGGAGGTCCTTCTCCGTGGGGAAGGCCGCTGAA
TTTTATGCCCCCCCCCCCAGGTGCCTCTCACATCTGGAGCTAG
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protein sequence of rna4990

>rna4990-protein ID=rna4990-protein|Name=rna4990|organism=Nannochloropsis gaditana|type=polypeptide|length=264bp
MNADLQAAGLREVAPAPVSNLPEAVGDVDVRALLEEEEDEEEDEEEDEDK
EEDEDEEGNGRGEKEGGRGHEGLLRGRRRRVHGEKEGSGPREEDDDLALL
LATSGEVQDEEGKEGVEEEDREEEEGGGEDEDLAFLLSLGEAHGKEEEEE
EEEGGGVCLPPPARLHAASHAEEEKVKARCAWQESDPDLGDVGMPEEGAA
DAKICGRLTRLNRSGRKEGGREGGREGGREEGVWKLRLEDCFLWTPDREV
LFERVDFRVKQNFT
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mRNA from alignment at CM002464.1:855868..856662+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4990 ID=rna4990|Name=rna4990|organism=Nannochloropsis gaditana|type=mRNA|length=795bp|location=Sequence derived from alignment at CM002464.1:855868..856662+ (Nannochloropsis gaditana)
ATGAATGCAGACCTACAGGCTGCTGGTCTCCGGGAGGTAGCTCCTGCGCC
GGTATCGAACCTTCCAGAAGCTGTCGGGGACGTCGACGTGCGGGCcctgt
tggaggaggaggaggacgaggaggaggacgaggaggaggacgaggacaag
gaggaggacgaggacgaggaggggaacggaaggggggagaaggagggcgg
aagggggcaTGAGGGGCTActgaggggaaggaggaggagggtacatggag
agaaggagggttcggggccgagagaggaggatgacgactTGGCACTCCTC
TTGGCTACATCGGGCGAGGTacaggatgaggaagggaaggagggcgtgga
agaggaggacagggaggaagaggagggagggggggaggacgaggatttgg
ccttcctcttgagcctgggggaggcgcatggaaaggaggaggaggaggag
gaggaggagggaggaggcgtgtgccttcctccccctgcgcgTCTCCATGC
CGCCTCGcatgcagaggaggaaaaggtaaAGGCTAGGTGTGCGTGGCAag
aaagcgacccggatTTAGGAGACGTTGGGATGCCTGAAGAAGGAGCGGCG
GATGCGAAGATTTGTGGGAGGCTCACGCGGTTGAATCGGtcgggcaggaa
ggagggcgggagggagggcggaagggagggcgggagggaggaaggggtct
gGAAGCTCCGGTTAGAGGATTGCTTTCTATGGACTCCGGACCGGGAGGTG
TTGTTTGAACGCGTCGACTTTCGTGTAAAGCAGAACTTCACgtag
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Coding sequence (CDS) from alignment at CM002464.1:855868..856662+

>rna4990 ID=rna4990|Name=rna4990|organism=Nannochloropsis gaditana|type=CDS|length=795bp|location=Sequence derived from alignment at CM002464.1:855868..856662+ (Nannochloropsis gaditana)
ATGAATGCAGACCTACAGGCTGCTGGTCTCCGGGAGGTAGCTCCTGCGCC
GGTATCGAACCTTCCAGAAGCTGTCGGGGACGTCGACGTGCGGGCcctgt
tggaggaggaggaggacgaggaggaggacgaggaggaggacgaggacaag
gaggaggacgaggacgaggaggggaacggaaggggggagaaggagggcgg
aagggggcaTGAGGGGCTActgaggggaaggaggaggagggtacatggag
agaaggagggttcggggccgagagaggaggatgacgactTGGCACTCCTC
TTGGCTACATCGGGCGAGGTacaggatgaggaagggaaggagggcgtgga
agaggaggacagggaggaagaggagggagggggggaggacgaggatttgg
ccttcctcttgagcctgggggaggcgcatggaaaggaggaggaggaggag
gaggaggagggaggaggcgtgtgccttcctccccctgcgcgTCTCCATGC
CGCCTCGcatgcagaggaggaaaaggtaaAGGCTAGGTGTGCGTGGCAag
aaagcgacccggatTTAGGAGACGTTGGGATGCCTGAAGAAGGAGCGGCG
GATGCGAAGATTTGTGGGAGGCTCACGCGGTTGAATCGGtcgggcaggaa
ggagggcgggagggagggcggaagggagggcgggagggaggaaggggtct
gGAAGCTCCGGTTAGAGGATTGCTTTCTATGGACTCCGGACCGGGAGGTG
TTGTTTGAACGCGTCGACTTTCGTGTAAAGCAGAACTTCACgtag
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Synonyms
Publications