rna4989, rna4989 (mRNA) Nannochloropsis gaditana

Overview
Namerna4989
Unique Namerna4989
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length964
Alignment locationCM002464.1:854609..855301 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100222g9.2415.mrna
Orig protein idgnl|cribi|Naga_100222g9.2415
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:854609..855301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100222g9gene4818Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4989rna4989-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25702.1cds4977Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4989 ID=rna4989|Name=rna4989|organism=Nannochloropsis gaditana|type=mRNA|length=964bp
AGAGTGTGATCAAAAAGAAAACCTTGACTTTAGGCCTCAGAGCATTGAAG
CCCGCGGGAAAGGTAGACGGGGACTGTGAAATGGAAGAGGACGCCTTGCT
TCCGCATGCGGGAAACGATGACGGTGGCAGTGTGATGGAAAAGGACCTCT
CGCTTTTCGGTTGTCTGCAGGCAATGTGCCTGCGGGGACTTGGTGCGAGT
CTGTCACTGTGGAAGCTGTGTCACGCAGACGGATAGGGTGGTCGTTGACA
CTGAAAAGTAGAAATGTGGCGGTTGGGAACCTCTTGATCATGACAATCGC
GTAGAAGGGATGCTCCGTTGTTTATCTTTGACATCTCTGTCTTCCCCTTC
ATGCAATCTTCACGGTCTCACAAAGGCGAGCGGTCTTCGTTGTTGAGAAC
ACGGCGTGGTACTCTTACAAAACCGCCTTCTGACATGCTTGGTCGCATAG
CTACCACGTTCTCGCGGCAAGTGCCGAGAAGGGCGCCGTCACTCGCGTTC
ACTCGTCCTACTACCGGCAGGCGGTTCTTAGGAAGCGGAGGCGGCCATGG
AGACCATTTCCATGTCTCAGAGATGCATCAAAAAGCGGCGACAGTCATGA
CGACTGTTTGCTGGGTGTGGATGTTGTGGCGATGTTATGAAGATGGCGCC
GTGGTACTGGGGTTGAGGCACCCGTGGGATGGGCATGGGGATCATGGACA
CCATGGGGGAGGCGCACACTTCAAGGATGTCGATTTCGACGGTCCCTCGG
AGCTAGAGGAAGCCGAGGAGGATGACGGCGGGCATTAGACTGGGATGTAG
GATGTATGTGTGGGGTGGGGAATGGCCGGGACGTACGCGGCACCCCCGGG
TTTTGCTCAAGGAAGCAAAGGTGCCTTGTGGCCTCGATAAAAGGGAGGCA
GTCACGGCCTCAAATTTGTCGTGTCGAAAGTGTTCATTTCGCTTTTCACT
GACGCGCGACGCTC
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protein sequence of rna4989

>rna4989-protein ID=rna4989-protein|Name=rna4989|organism=Nannochloropsis gaditana|type=polypeptide|length=230bp
MAFNGVLEEVGTASPLVSPGISGGDMDEESGLIARPKRLSRGVILAYRSV
VEQVLPTFAVALQLDKSTGLSSGDAEHGAQKLKDLWLKAMKEKLGVDLGV
LSMSEATLPLNEEEGQGGAREDVNLPRDGRVLDADREKEGDDEEEKAEIM
GEEERRVEGLKVAQASRTFRWLSPPRRPFRAPNDGLRGNSGEGVRLPGRI
RQADRQGGPSPWGRPLNFMPPPPGASHIWS
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mRNA from alignment at CM002464.1:854609..855301+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4989 ID=rna4989|Name=rna4989|organism=Nannochloropsis gaditana|type=mRNA|length=693bp|location=Sequence derived from alignment at CM002464.1:854609..855301+ (Nannochloropsis gaditana)
ATGGCGTTTAATGGCGTGCTTGAAGAGGTGGGGACGGCATCGCCACTAGT
GTCTCCTGGAATTTCTGGCGGTGatatggacgaggaaagtGGTTTGATTG
CTCGACCCAAGCGACTTTCTCGCGGGGTCATTTTGGCGTACCGGAGTGTG
GTAGAGCAGGTCCTCCCTACTTTCGCGGTTGCGTTGCAGCTAGACAAGTC
CACCGGTCTTTCATCAGGAGACGCAGAACATGGAGCTCAAAAATTGAAAG
ATCTGTGGCTCAAAGCGATGAAAGAAAAATTGGGAGTGGACTTGGGAGTA
CTATCCATGTCAGAGGCTACTTTGCCTCTaaatgaagaagaggggcaggg
aggagcaagggaggacgtgaacCTGccgagggacgggagggtaTTAGATG
CAGatcgggagaaagagggcgacgacgaggaggagaaggcagaaataatg
ggagaggaagaacgACGGGTGGAGGGTCTGAAGGTGGCGCAAGCTTCCCG
TACCTTTCGATGGCTAagtcctccccgccgcccgtTCCGAGCACCAAATG
ACGGGCTGCGAGGGAATagtggagagggagtgcgCCTTCCGGGGAGGATA
CGGCAAGCGGACAGGCAGGGAGGTCCTTCTCCGTGGGGAAGGCCGCTGAA
TTttatgcccccccccccaggtgCCTCTCACATCTGGAgctag
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Coding sequence (CDS) from alignment at CM002464.1:854609..855301+

>rna4989 ID=rna4989|Name=rna4989|organism=Nannochloropsis gaditana|type=CDS|length=693bp|location=Sequence derived from alignment at CM002464.1:854609..855301+ (Nannochloropsis gaditana)
ATGGCGTTTAATGGCGTGCTTGAAGAGGTGGGGACGGCATCGCCACTAGT
GTCTCCTGGAATTTCTGGCGGTGatatggacgaggaaagtGGTTTGATTG
CTCGACCCAAGCGACTTTCTCGCGGGGTCATTTTGGCGTACCGGAGTGTG
GTAGAGCAGGTCCTCCCTACTTTCGCGGTTGCGTTGCAGCTAGACAAGTC
CACCGGTCTTTCATCAGGAGACGCAGAACATGGAGCTCAAAAATTGAAAG
ATCTGTGGCTCAAAGCGATGAAAGAAAAATTGGGAGTGGACTTGGGAGTA
CTATCCATGTCAGAGGCTACTTTGCCTCTaaatgaagaagaggggcaggg
aggagcaagggaggacgtgaacCTGccgagggacgggagggtaTTAGATG
CAGatcgggagaaagagggcgacgacgaggaggagaaggcagaaataatg
ggagaggaagaacgACGGGTGGAGGGTCTGAAGGTGGCGCAAGCTTCCCG
TACCTTTCGATGGCTAagtcctccccgccgcccgtTCCGAGCACCAAATG
ACGGGCTGCGAGGGAATagtggagagggagtgcgCCTTCCGGGGAGGATA
CGGCAAGCGGACAGGCAGGGAGGTCCTTCTCCGTGGGGAAGGCCGCTGAA
TTttatgcccccccccccaggtgCCTCTCACATCTGGAgctag
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Synonyms
Publications