rna4986, rna4986 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4986
Unique Name	rna4986
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2113
Alignment location	CM002464.1:848249..850447 -

Link to JBrowse

Properties


Property Name	Value
Product	subfamily c member 2 protein
Orig transcript id	gnl\|cribi\|Naga_100222g6.2409.mrna
Orig protein id	gnl\|cribi\|Naga_100222g6.2409
Gene	Hsp40
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:848249..850447 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Hsp40	gene4815	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25696.1	cds4974	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4986	rna4986-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:848249..850447-
coding sequence from alignment at CM002464.1:848249..850447-

mRNA sequence

>rna4986 ID=rna4986|Name=rna4986|organism=Nannochloropsis gaditana|type=mRNA|length=2113bp
GTGCGTCTGTCCACAAGATACAAGGGCCGGGGCGGGGCACCAGCATGAAG
TTGCTGCTTCGCCAGGTCTTTCTAAGGCGGCAAGGCCTGAAAGCGGCATC
TCGCGGAAGACGGTCTATCCGGCCATCATCGGCCTCATCACTGTCACCAT
CGTTCCTAAACGTAGGGGTCTTATGTAAGCACCTGAGCGTCGAAAGGTAT
GAAACCGATGCGGAGCTCCGGAAGACCTTAGGCATGCCAATACCTTTGGA
CGACCATGCGGTGTCAGTCGCCCTCCCCAAATGGCAGCACGTGGTGGGAT
ACGAAGAAGGAGACGTGGATGTGACAGAGAAAATGCTCTTGGGCTATCCA
CGTTTTGTCTACCACCCCTTTGTCAAGCAACTGGTTGATTTGTGGAAGGC
TGGTGCGGTCGAAAGCGGGGCAGTGGCCGGGCACGAAATAGTGGAGGCCC
TACCTTTTCCCTCCATGGGGTCCGCGGAACGGTGCCGGCGATTTTTGCTG
GAGGCTCACAAGCACGAGCCCGGGTTCCCCGTGGGGATACATAGTTTGGG
TGTCCTGGACACGCATGTGGTGAGCTTCCCGGCCATGGCCGCAAAGGACG
CCAAGGCCTATTGGCAGCACAGCGGGGAGATCCTCTCTTCCCGAAAAGCG
GCCCGGGTCTTGGCGTGCCTGGGTCACCCCGTTCCCACCTTGCTGGATGG
TCTTCCAACCTCCCCCCGGCCATCCGCGTCCTGTGCCCCGGGCGCTAGGA
CGGCGAGCGCCGCCGTGCCCGATTGCTATCGTCGGGGACTGCGGGAACGG
ATAGCGGACCTGACAGGGCAACACATGGTTGACGTACATTTGACCATCAC
AGGCATGGCCGCCATTTTCATGGCCTTTAATATGTGCCGTCAGGCGCGTC
CGGGGCGGCCGGTGGTTGTGTTTGGGTTCACGTACTTGGATACTCTGAAG
ATCTGCCTCCGGAAAGAATGGAATGCCCACGGGGTGCATTTTCTGGGCAA
AGGGGATGCACGGGACTTGAGTGTGTTGGAAGAGCTTTTGGAGAAAAAGG
AGGTGATGGCGGTCTTTACCGAATTTCCGAGCAATCCCTTGTTGCAGAAC
CCGGACCTGAGCCGGTTGGTGGCGCTGGGACGTCGCTATGGTTTCCCTGT
GGTCGTGGACGACACCATTTCCAATTTCCACAACGTGGATTTGATGCGCG
TGGGGGGTGCCGGGGGGGGAGTGGACATGTGCGTGAGCAGCCTGACCAAG
TTGTTCTCCGGAAAATCAGACGTGATGGCCGGCAGCTTGGTGCTGAACCG
TGCGTCCCCCCTGTACGGGGGGCTAAGGACGGCGATGGAGACGATGGAGG
GAGGAAACGACGCAGAATTGTACGAAGAGGACGCTCGGGTGGTGTGGGAG
AACGCGAGGGATTTTGAGGAACGTTCTCGGAGAATCAACGAGACCACGGG
CCGGTTGGTGGAGTGGCTGGGAAACCAAGCAGGGGTTGCGGAGGTCTTCT
ACCCCAGCCGGACGCAACGGGCGATATACGACGCATTCAAGCGGGCAGAA
GGAGGCTATGGCGGTCTATTCTCCGTGTCCCTGAGCCCTAGCCTGTCTCC
CACGGCCTTTTATGACGCCCTGGATGTGTTCAAAGGCCCCTCTCTGGGCA
CCAATTTCACCTTGGCCTGCCCCTACACCCTCTTGGCCCACTACTACGAA
TTGGATTTTGCCCGCCGCCACGGCGTCTGTCCAAATTTGGTACGGGTCTC
GGTGGGATTGGAGAGTTTCGAACACCTTCAGAAGGTCTTCGAGGTGGCGT
TAGACTCGGCCCGACGGCCCATACCGACAGGAGTGGCGCGTGAGAAATAC
TTCCCGCCCGGATTGACAGGCGGGTAGGAGAACGAGCGTAGGAGATAGCA
AGGAGATAGAAGCAATCACAGGGCAGAAAGAAATGCAGGGATGTAAAGTG
GAAAATTCGAACAGAAAGGTCTGACTGCCGGACGCCTGGACAGTGGCGAC
CGTCTGGTGTCGCCTCACAACCACGTTGCGTCCGCATGCTGGTTTCTTTG
CAAAATTGCTGCACGAGCAGTCCTTCTGTCCCCAATGGCGAGATTTTGTA
GCCCGTACCATCC

protein sequence of rna4986

>rna4986-protein ID=rna4986-protein|Name=rna4986|organism=Nannochloropsis gaditana|type=polypeptide|length=678bp
MVFRVKLPLPSSADDVFMDEEGVLIDITSPVPWGGTKSVTTEETSIDLPV
REIETCGLAYFRYQLKRQAIEAGEAGSGGFDPCKRLRDEAEGEEEIGEGG
EGGSDDTTFRFPKKTLTPKDVKKMDYYELLGLGHLSATEVGPDLLKKAYR
KALLLYHPDKTGRGDRDEVFIEVQKAYETLSDGRKKRAYDSEMNFDESIP
TGREKGDFFKVYGPVFDRNARFAVKRPVPNLGREDSKIEDVYRFYDYWGR
FESWRDFSLKAAEENDFHVEAAGSREEKRWMQKENDKLARAMKKEEYKRL
ATLVERARTADPRLKRAKELEKEKKEAIKAARTAAAREREVQRRKDAEEE
TKKKEEEEARLKEERARAKLVRDQAKKRMRSARSRFRALCSLLHRQEEEA
VGEETAGRRVVSVEEEDFMFEHVDVMGMEEAVAALEGVPYVYQAEPDGPS
PPPARVSPAGVARVTAIVERERQKRREAKREEETSKAASGLAHASAEKDG
GEESSPKEAAWTEEELGVLAKAVVRFPAGTQKRWQCIADYLNHMVRGASL
RSKEECIKQYQVVQAGVSKSRVVAATGGAGAGGGSEGRKSGKTGTSRGED
NGKAVASGDGWSQEQQKQLEAGLVTYPASMEKNERWKRISEGVQGKSKKE
CAERYKALRAAVAKKKEEAAGAKTQPLK

mRNA from alignment at CM002464.1:848249..850447-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4986 ID=rna4986|Name=rna4986|organism=Nannochloropsis gaditana|type=mRNA|length=2199bp|location=Sequence derived from alignment at CM002464.1:848249..850447- (Nannochloropsis gaditana)
GGGTAGGAAAACATGGTATTTCGTGTAAAATTACCATTGCCGTCCTCGGC
GGACGATGTATTTATGGACGAGGAGGGCGTGCTAATAGACATCACGAGTC
CAGTCCCATGGGGAGGTACGAAGTCTGTGACCACAGAGGAGACTTCGATT
GACTTGCCCGTGCGAGAAATAGAAACATGCGGCCTTGCCTACTTTCGATA
TCAGTTGAAGAGACAGGCGATCGAGGCAGGAGAGGCAGGGAGCGGAGGCT
TTGATCCATGTAAACGCCTCAGAGACGAGGCCGAAGGGGAGGAGGAAATA
GGGGAGGGCGGGGAGGGCGGCTCGGATGACACGACATTCCGGTTTCCCAA
GAAGACCCTGACACCTAAGGATGTGAAGAAGATGGATTACTACGAATTGT
TGGGCTTGGGGCATTTATCAGCGACGGAGGTCGGTCCAGACTTATTGAAG
AAAGCATACCGAAAAGCGCTCCTTCTGTACCACCCGGACAAGACTGGTCG
CGGAGATCGCGACGAGGTCTTCATCGAGGTGCAAAAGGCGTACGAAACGC
TGAGCGACGGACGCAAAAAACGCGCGTACGATTCGGAGATGAATTTCGAC
GAGAGCATCCCGACGGGAAGGGAGAAGGGTGACTTTTTCAAGGTGTATGG
CCCTGTCTTTGACCGGAACGCCCGCTTCGCCGTGAAACGGCCGGTGCCAA
ATCTAGGTCGGGAGGACAGCAAAATCGAGGACGTGTACCGGTTCTACGAC
TACTGGGGTCGATTTGAAAGTTGGCGGGATTTCAGTTTGAAGGCGGCGGA
GGAAAACGATTTCCATGTGGAGGCCGCCGGTTCCAGGGAAGAGAAACGAT
GGATGCAGAAGGAGAACGACAAGCTGGCGCGGGCCATGAAAAAGGAGGAG
TACAAGCGGTTGGCCACCCTGGTGGAGAGAGCACGGACGGCCGATCCTCG
TTTGAAGCGGGCGAAGGAGTTGGAGAAGGAGAAGAAGGAGGCGATCAAAG
CCGCCCGAACCGCGGCGGCGCGGGAACGGGAAGTGCAAAGGCGCAAAGAT
GCGGAGGAAGAGACGAAGAAGAAGGAAGAGGAAGAAGCACGGTTGAAAGA
GGAGAGAGCGCGGGCGAAGCTGGTTCGGGACCAAGCCAAGAAGAGGATGC
GTAGTGCCCGAAGTCGGTTTCGCGCCCTGTGCAGCCTGTTGCACCGCCAA
GAGGAGGAGGCCGTGGGCGAAGAAACGGCGGGACGAAGGGTGGTGTCGGT
CGAGGAGGAGGATTTCATGTTCGAGCACGTGGACGTGATGGGGATGGAGG
AGGCGGTGGCGGCCTTGGAGGGGGTACCGTACGTCTACCAGGCGGAGCCG
GACGGGCCATCCCCCCCCCCGGCCCGGGTATCGCCTGCAGGGGTGGCACG
CGTCACCGCGATCGTGGAGCGGGAGCGCCAAAAGAGACGGGAGGCAAAAC
GGGAGGAGGAAACAAGCAAGGCCGCGTCTGGACTCGCCCACGCGTCGGCT
GAAAAGGACGGAGGAGAGGAGTCCTCCCCGAAGGAAGCGGCGTGGACCGA
AGAGGAGCTCGGGGTGCTGGCCAAGGCAGTGGTGCGCTTCCCCGCGGGCA
CGCAAAAACGCTGGCAGTGCATTGCCGACTATTTGAACCACATGGTCCGG
GGCGCGTCTTTGCGGAGCAAGGAGGAATGCATCAAGCAGTACCAGGTCGT
TCAGGCAGGGGTCAGTAAGAGCCGCGTGGTGGCAGCCACGGGGGGCGCCG
GGGCGGGGGGTGGAAGCGAGGGAAGAAAGTCGGGGAAGACGGGGACGAGC
AGGGGGGAGGACAATGGAAAGGCCGTGGCAAGCGGGGATGGGTGGAGTCA
GGAGCAACAGAAGCAATTGGAGGCCGGGCTCGTGACTTATCCTGCCAGCA
TGGAGAAGAACGAAAGGTGGAAGAGGATATCGGAGGGCGTGCAAGGCAAA
AGCAAGAAGGAGTGTGCAGAACGCTACAAGGCACTGCGGGCGGCCGTGGC
GAAAAAGAAAGAGGAAGCAGCCGGCGCGAAAACCCAGCCCCTCAAGTAGA
AAGGGAAGCGGAGGGTACGAGGAGGATGGTACGGGCTACAAAATCTCGCC
ATTGGGGACAGAAGGACTGCTCGTGCAGCAATTTTGCAAAGAAACCAGCA
TGCGGACGCAACGTGGTTGTGAGGCGACACCAGACGGTCGCCACTGTCC

Coding sequence (CDS) from alignment at CM002464.1:848249..850447-

>rna4986 ID=rna4986|Name=rna4986|organism=Nannochloropsis gaditana|type=CDS|length=2037bp|location=Sequence derived from alignment at CM002464.1:848249..850447- (Nannochloropsis gaditana)
ATGGTATTTCGTGTAAAATTACCATTGCCGTCCTCGGCGGACGATGTATT
TATGGACGAGGAGGGCGTGCTAATAGACATCACGAGTCCAGTCCCATGGG
GAGGTACGAAGTCTGTGACCACAGAGGAGACTTCGATTGACTTGCCCGTG
CGAGAAATAGAAACATGCGGCCTTGCCTACTTTCGATATCAGTTGAAGAG
ACAGGCGATCGAGGCAGGAGAGGCAGGGAGCGGAGGCTTTGATCCATGTA
AACGCCTCAGAGACGAGGCCGAAGGGGAGGAGGAAATAGGGGAGGGCGGG
GAGGGCGGCTCGGATGACACGACATTCCGGTTTCCCAAGAAGACCCTGAC
ACCTAAGGATGTGAAGAAGATGGATTACTACGAATTGTTGGGCTTGGGGC
ATTTATCAGCGACGGAGGTCGGTCCAGACTTATTGAAGAAAGCATACCGA
AAAGCGCTCCTTCTGTACCACCCGGACAAGACTGGTCGCGGAGATCGCGA
CGAGGTCTTCATCGAGGTGCAAAAGGCGTACGAAACGCTGAGCGACGGAC
GCAAAAAACGCGCGTACGATTCGGAGATGAATTTCGACGAGAGCATCCCG
ACGGGAAGGGAGAAGGGTGACTTTTTCAAGGTGTATGGCCCTGTCTTTGA
CCGGAACGCCCGCTTCGCCGTGAAACGGCCGGTGCCAAATCTAGGTCGGG
AGGACAGCAAAATCGAGGACGTGTACCGGTTCTACGACTACTGGGGTCGA
TTTGAAAGTTGGCGGGATTTCAGTTTGAAGGCGGCGGAGGAAAACGATTT
CCATGTGGAGGCCGCCGGTTCCAGGGAAGAGAAACGATGGATGCAGAAGG
AGAACGACAAGCTGGCGCGGGCCATGAAAAAGGAGGAGTACAAGCGGTTG
GCCACCCTGGTGGAGAGAGCACGGACGGCCGATCCTCGTTTGAAGCGGGC
GAAGGAGTTGGAGAAGGAGAAGAAGGAGGCGATCAAAGCCGCCCGAACCG
CGGCGGCGCGGGAACGGGAAGTGCAAAGGCGCAAAGATGCGGAGGAAGAG
ACGAAGAAGAAGGAAGAGGAAGAAGCACGGTTGAAAGAGGAGAGAGCGCG
GGCGAAGCTGGTTCGGGACCAAGCCAAGAAGAGGATGCGTAGTGCCCGAA
GTCGGTTTCGCGCCCTGTGCAGCCTGTTGCACCGCCAAGAGGAGGAGGCC
GTGGGCGAAGAAACGGCGGGACGAAGGGTGGTGTCGGTCGAGGAGGAGGA
TTTCATGTTCGAGCACGTGGACGTGATGGGGATGGAGGAGGCGGTGGCGG
CCTTGGAGGGGGTACCGTACGTCTACCAGGCGGAGCCGGACGGGCCATCC
CCCCCCCCGGCCCGGGTATCGCCTGCAGGGGTGGCACGCGTCACCGCGAT
CGTGGAGCGGGAGCGCCAAAAGAGACGGGAGGCAAAACGGGAGGAGGAAA
CAAGCAAGGCCGCGTCTGGACTCGCCCACGCGTCGGCTGAAAAGGACGGA
GGAGAGGAGTCCTCCCCGAAGGAAGCGGCGTGGACCGAAGAGGAGCTCGG
GGTGCTGGCCAAGGCAGTGGTGCGCTTCCCCGCGGGCACGCAAAAACGCT
GGCAGTGCATTGCCGACTATTTGAACCACATGGTCCGGGGCGCGTCTTTG
CGGAGCAAGGAGGAATGCATCAAGCAGTACCAGGTCGTTCAGGCAGGGGT
CAGTAAGAGCCGCGTGGTGGCAGCCACGGGGGGCGCCGGGGCGGGGGGTG
GAAGCGAGGGAAGAAAGTCGGGGAAGACGGGGACGAGCAGGGGGGAGGAC
AATGGAAAGGCCGTGGCAAGCGGGGATGGGTGGAGTCAGGAGCAACAGAA
GCAATTGGAGGCCGGGCTCGTGACTTATCCTGCCAGCATGGAGAAGAACG
AAAGGTGGAAGAGGATATCGGAGGGCGTGCAAGGCAAAAGCAAGAAGGAG
TGTGCAGAACGCTACAAGGCACTGCGGGCGGCCGTGGCGAAAAAGAAAGA
GGAAGCAGCCGGCGCGAAAACCCAGCCCCTCAAGTAG

Synonyms

Publications