rna4985, rna4985 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4985
Unique Name	rna4985
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2245
Alignment location	CM002464.1:846018..848374 +

Link to JBrowse

Properties


Property Name	Value
Product	cystathionine gamma-synthase
Orig transcript id	gnl\|cribi\|Naga_100222g5.2417.mrna
Orig protein id	gnl\|cribi\|Naga_100222g5.2417
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:846018..848374 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100222g5	gene4814	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4985	rna4985-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25704.1	cds4973	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:846018..848374+
coding sequence from alignment at CM002464.1:846018..848374+

mRNA sequence

>rna4985 ID=rna4985|Name=rna4985|organism=Nannochloropsis gaditana|type=mRNA|length=2245bp
CCACGACCCCCCTCCATACCGTCTCGCCGGATGCCAGCGCGACGCTGTGG
ATACATGAAGCCCCACGTCCTTCAGGTCGGGGGACTTTTGGTGCAAAACA
CCGGCACGGAAGAGCACAGTAGAGTATGGAAATGAAACCCTTGTCATAAC
TGTATGCCATACGACCTCGTGGAAAGCACTTGTCGTCGGAATTCATTCAT
ATTTAACCCTCAACCAATCGACCCTCCCCTTGGCAACGGCCCCCTCTCTC
CGTCACCTTGGCGCTTTTCAACCCAACTAGCCTTTTACGAACTCCTATTC
AATACCGAGACATCCTGATCGACGAATACATCCATTCTTAGAGTTTAACA
GTACATTCAGCCCTCGTTCATGGACCCACAGCTCCTTCCTTGTTTTTCCA
ACACACAGATTCTGTTCCCTTGTCTCCCTTCCTCGCACTGGGCGGCGAAA
GACTGACCCATTCATGCCCGAGACCGGCCTGGGCTCCGAAGGATTGGTTA
TCCAAGAGTGCATGACGATCAGTAGAATTGACGGTCCTGGCTACGCAAAT
GGGGCTGGTAAAGGTTTGCGTTTGTCCTTGGACGATGAGAAAACCAGCCT
TTTACGGGGGGGCGAGGCGGGCGGGCCGAGCGCCAAACACGCAGAGGCAC
GGGATAGCGACGACAATGGAGGAATAAACGGCGGAACGTTCACACAGATC
ACTTCAACACCTTTGATGGCGGAGGGACAATCCTCGCACGGCCACCAAGC
AGGGCAGCATGCGGCCCGCAAACCCTCCATTTCCATCGTGGACGGCTACA
ACAGTCCCGTCCGTCGCGGGGGTTATCGAAGCTACATGGAAGTAGACGAG
GAAGCAGCGGCCGGGTCTTTGAGCAGAAATGGGTGGACAAGCGGAAATAA
TGGTGGGATTATCCACCGGTACGGAAGCGGGGATGCTGGGAGCCATGTTC
CTCCTCATGCTTGCCAGGATCATTGCGTGATAGCCCGACGCGAAACCGAA
CAAGCAGAGCGCTTGAGTAACAAGGTTCGCTTTGCCGTGCACGCCTCCAT
ATGTGCCAATGTTCTCCTGTCCATGGCAAGCGCGTACGCGGCCTTCCGGT
CAGGGTCCTTGGCCGTGCTGGCCTCCCTCGTCGACACTCTCTTGGATCTC
ATCTCCCAAGTAGTGCTTTCGGTAGCGGAGCACGGGATGCGGAAACCCTC
CGACGAGCATTATCCAGCGGGTCGGTCTCGGATAGAGCCTGTGGGTGTGA
TCATCGTCTCGGTCATCATGGGTGTGGCGGCCTTGGAACTGTTGCGGGCG
TCGGTCGGGACCTTGGTGCTGGCCATTGCCTATGGGAAATTACCGCACTT
AGACATGGAGCCGGTCACTGTTGGCATTATGGTCTGTGCGGTTGGCGTCA
AACTCTCCCTCTACCTGTACTCGAGCACCCTCGCGGGCGTCAGCGGCACG
GCCGAGGCGCTGGCGGAAGACCACAAGAACGACATCATGACCAACTCCTT
CTCGGTCCTTTCCTCAACAGTGGCCCATTATTACCCCAAAGCCTGGTTCG
TCGACCCCATCGGCGCGATCGTCATCTCCTGCCTCATTTTTTACAACTGG
TTGCACGTAGGCATGGACCACGCGTCCAAAATCGTCGGTCTCTCCGCCCC
TCCTGAGACCCTGGAACACATCAGCGACCTGGCCGGGCAGCATCACGCGC
AGTTGGAGCTGGATATCATCAGGGCTTATCATTTTGGACCGAATTTTTTG
GTGGAGTTGGAAGTTGTACTTCCTTGGGATATGAATGTCAAAGAAGCGCA
CGACATCGCGCTTGGGCTGCAGCAGAAGGTGGAGCAGCAAAGTTTCGTGG
AACGGTGTTTTGTGCATGTAGACTATCAGGTGCGGGGTTACAATGAACAT
AAAATATAGGACGTGAGGGGTGTAGGGGAGTTGGGCGGGAGAAGAAATGT
ACATAGGCGAGGCGAATGAATGGCAGAGGGCTGTCGAGAATCGCGTGGGG
TGGAGGACACTAGTGATGCATGATCTCGATGAAAAGGGACGAAAAATCAT
GGAGCCGCAGTGTTTTCACACTTAGTGTCTGGTGGAACGTGACACGTATA
TTGAAACTTTTTCGTGGACAATTATGCACAAGTAAACACGACAAACAGAC
TGTGAAGGAGTTCAAAAAGTGCTTGCCAGCAACCTTTTGCTTTTTGTGGC
TGTCTAAGACAATTTGAAACTTAAGAAAAAGAACTAATGGTTTGT

protein sequence of rna4985

>rna4985-protein ID=rna4985-protein|Name=rna4985|organism=Nannochloropsis gaditana|type=polypeptide|length=610bp
MKLLLRQVFLRRQGLKAASRGRRSIRPSSASSLSPSFLNVGVLCKHLSVE
RYETDAELRKTLGMPIPLDDHAVSVALPKWQHVVGYEEGDVDVTEKMLLG
YPRFVYHPFVKQLVDLWKAGAVESGAVAGHEIVEALPFPSMGSAERCRRF
LLEAHKHEPGFPVGIHSLGVLDTHVVSFPAMAAKDAKAYWQHSGEILSSR
KAARVLACLGHPVPTLLDGLPTSPRPSASCAPGARTASAAVPDCYRRGLR
ERIADLTGQHMVDVHLTITGMAAIFMAFNMCRQARPGRPVVVFGFTYLDT
LKICLRKEWNAHGVHFLGKGDARDLSVLEELLEKKEVMAVFTEFPSNPLL
QNPDLSRLVALGRRYGFPVVVDDTISNFHNVDLMRVGGAGGGVDMCVSSL
TKLFSGKSDVMAGSLVLNRASPLYGGLRTAMETMEGGNDAELYEEDARVV
WENARDFEERSRRINETTGRLVEWLGNQAGVAEVFYPSRTQRAIYDAFKR
AEGGYGGLFSVSLSPSLSPTAFYDALDVFKGPSLGTNFTLACPYTLLAHY
YELDFARRHGVCPNLVRVSVGLESFEHLQKVFEVALDSARRPIPTGVARE
KYFPPGLTGG

mRNA from alignment at CM002464.1:846018..848374+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4985 ID=rna4985|Name=rna4985|organism=Nannochloropsis gaditana|type=mRNA|length=2357bp|location=Sequence derived from alignment at CM002464.1:846018..848374+ (Nannochloropsis gaditana)
GTGCGTCTGTCCACAAGTGAGCAAAAAGGAGTACATTGTAGAGTGGATGt
ctccattttttcttccgtgGTGACAGCAATTTGGTACTGCTGTCTTCGGA
AACTAGACGGAGCAGGGATGAACTTATAAAGATCATACCGTACTCATACT
TCTCACCTTTACCAAGGTGCAAGCTTTGACGATGGGGACTGAATTTAAAG
ACAGTCCGGGGGACACAATCGTTTATCGACTTCTTTTTTAACACAAACCA
TACAATACAGGATACaagggccggggcggggcacCAGCATGAAGTTGCTG
CTTCGCCAGGTCTTTCTAAGGCGGCAAGGCCTGAAAGCGGCATCTCGCGG
AAGACGGTCTATCCGGCCATCATCGGCCTCATCACTGTCACCATCGTTCC
TAAACGTAGGGGTCTTATGTAAGCACCTGAGCGTCGAAAGGTATGAAACC
GATGCGGAGCTCCGGAAGACCTTAGGCATGCCAATACCTTTGGACGACCA
TGCGGTGTCAGTCGCCCTCCCCAAATGGCAGCACGTGGTGGGAtacgaag
aaggagacgtgGATGTGACAGAGAAAATGCTCTTGGGCTATCCACGTTTT
GTCTACCACCCCTTTGTCAAGCAACTGGTTGATTTGTGGAAGGCTGGTGC
GGTCGAAAGCGGGGCAGTGGCCGGGCACGAAATAGTGGAGGCCCtacctt
ttccctccatggGGTCCGCGGAACGGTGCCGGCGATTTTTGCTGGAGGCT
CACAAGCACGAGCCCGGGTTCCCCGTGGGGATACATAGTTTGGGTGTCCT
GGACACGCATGTGGTGAGCTTCCCGGCCATGGCCGCAAAGGACGCCAAGG
CCTATTGGCAGCACAGCGGGGAGATCCTCTCTTCCCGAAAAGCGGCCCGG
GTCTTGGCGTGCCTGGGTCACCCCGTTCCCACCTTGCTGGATGGtcttcc
aacctccccccggccATCCGCGTCCTGTGCCCCGGGCGCTAGGACGGCGA
GCGCCGCCGTGCCCGATTGCTATCGTCGGGGACTGCGGGAACGGATAGCG
GACCTGACAGGGCAACACATGGTTGACGTACATTTGACCATCACAGGCAT
GGCCGCCATTTTCATGGCCTTTAATATGTGCCGTCAGGCGCGTCCGGGGC
GGCCGGTGGTTGTGTTTGGGTTCACGTACTTGGATACTCTGAAGATCTGC
CTCCGGAAAGAATGGAATGCCCACGGGGTGCATTTTCTGGGCAAAGGGGA
TGCACGGGACTTGAGTGTGTTGGAAGAGCTtttggagaaaaaggaggtga
tggcggtCTTTACCGAATTTCCGAGCAATCCCTTGTTGCAGAACCCGGAC
CTGAGCCGGTTGGTGGCGCTGGGACGTCGCTATGGTTTCCCTGTGGTCGT
GGACGACACCATTTCCAATTTCCACAACGTGGATTTGATGCGCGTGGggg
gtgccggggggggagtggacATGTGCGTGAGCAGCCTGACCAAGTTGTTC
TCCGGAAAATCAGACGTGATGGCCGGCAGCTTGGTGCTGAACCGTGCGTC
CCCCCTGTACGGGGGGCTAAGGacggcgatggagacgatggagggaggaa
acgacgCAGAATTGTACGAAGAGGACGCTCGGGTGGTGTGGGAGAACGCG
AGGGATTTTGAGGAACGTTCTCGGAGAATCAACGAGACCACGGGCCGGTT
GGTGGAGTGGCTGGGAAACCAAGCAGGGGTTGCGGAGGTCTTCTACCCCA
GCCGGACGCAACGGGCGATATACGACGCATTCAAgcgggcagaaggaggc
TATGGCGGTCTATTCTCCGTGTCCCTGAGCCCTAGCCTGTCTCCCACGGC
CTTTTATGACGCCCTGGATGTGTTCAAAGGCCCCTCTCTGGGCACCAATT
TCACCTTGGCCTGCCCCTACACCCTCTTGGCCCACTACTACGAATTGGAT
TTtgcccgccgccacggcgtcTGTCCAAATTTGGTACGGGTCTCGGTGGG
ATTGGAGAGTTTCGAACACCTTCAGAAGGTCTTCGAGGTGGCGTTAGACT
CGGCCCGACGGCCCATACCGACAGGAGTGGCGCGTGAGAAATACTTCCCG
CCCGGATTGACAGGCGGGTAGGAGAACGAGCGTAGGAGATAGCAAGGAGA
TAGAAGCAATCACAGGGCAGAAAGAAATGCAGGGATGTAAAGTGGAAAAT
TCGAACAGAAAGGTCTGACTGCCGGACGCCTGGACAGTGGCGACCGTCTG
GTGTCGCCTCACAACCACGTTGCGTCCGCATGCTGGTTTCTTTGCAAAAT
TGCTGCACGAGCAGTCCTTCTGTCCCCAATGGCGAGATTTTGTAGCCCgt
accatcc

Coding sequence (CDS) from alignment at CM002464.1:846018..848374+

>rna4985 ID=rna4985|Name=rna4985|organism=Nannochloropsis gaditana|type=CDS|length=1833bp|location=Sequence derived from alignment at CM002464.1:846018..848374+ (Nannochloropsis gaditana)
ATGAAGTTGCTGCTTCGCCAGGTCTTTCTAAGGCGGCAAGGCCTGAAAGC
GGCATCTCGCGGAAGACGGTCTATCCGGCCATCATCGGCCTCATCACTGT
CACCATCGTTCCTAAACGTAGGGGTCTTATGTAAGCACCTGAGCGTCGAA
AGGTATGAAACCGATGCGGAGCTCCGGAAGACCTTAGGCATGCCAATACC
TTTGGACGACCATGCGGTGTCAGTCGCCCTCCCCAAATGGCAGCACGTGG
TGGGAtacgaagaaggagacgtgGATGTGACAGAGAAAATGCTCTTGGGC
TATCCACGTTTTGTCTACCACCCCTTTGTCAAGCAACTGGTTGATTTGTG
GAAGGCTGGTGCGGTCGAAAGCGGGGCAGTGGCCGGGCACGAAATAGTGG
AGGCCCtaccttttccctccatggGGTCCGCGGAACGGTGCCGGCGATTT
TTGCTGGAGGCTCACAAGCACGAGCCCGGGTTCCCCGTGGGGATACATAG
TTTGGGTGTCCTGGACACGCATGTGGTGAGCTTCCCGGCCATGGCCGCAA
AGGACGCCAAGGCCTATTGGCAGCACAGCGGGGAGATCCTCTCTTCCCGA
AAAGCGGCCCGGGTCTTGGCGTGCCTGGGTCACCCCGTTCCCACCTTGCT
GGATGGtcttccaacctccccccggccATCCGCGTCCTGTGCCCCGGGCG
CTAGGACGGCGAGCGCCGCCGTGCCCGATTGCTATCGTCGGGGACTGCGG
GAACGGATAGCGGACCTGACAGGGCAACACATGGTTGACGTACATTTGAC
CATCACAGGCATGGCCGCCATTTTCATGGCCTTTAATATGTGCCGTCAGG
CGCGTCCGGGGCGGCCGGTGGTTGTGTTTGGGTTCACGTACTTGGATACT
CTGAAGATCTGCCTCCGGAAAGAATGGAATGCCCACGGGGTGCATTTTCT
GGGCAAAGGGGATGCACGGGACTTGAGTGTGTTGGAAGAGCTtttggaga
aaaaggaggtgatggcggtCTTTACCGAATTTCCGAGCAATCCCTTGTTG
CAGAACCCGGACCTGAGCCGGTTGGTGGCGCTGGGACGTCGCTATGGTTT
CCCTGTGGTCGTGGACGACACCATTTCCAATTTCCACAACGTGGATTTGA
TGCGCGTGGggggtgccggggggggagtggacATGTGCGTGAGCAGCCTG
ACCAAGTTGTTCTCCGGAAAATCAGACGTGATGGCCGGCAGCTTGGTGCT
GAACCGTGCGTCCCCCCTGTACGGGGGGCTAAGGacggcgatggagacga
tggagggaggaaacgacgCAGAATTGTACGAAGAGGACGCTCGGGTGGTG
TGGGAGAACGCGAGGGATTTTGAGGAACGTTCTCGGAGAATCAACGAGAC
CACGGGCCGGTTGGTGGAGTGGCTGGGAAACCAAGCAGGGGTTGCGGAGG
TCTTCTACCCCAGCCGGACGCAACGGGCGATATACGACGCATTCAAgcgg
gcagaaggaggcTATGGCGGTCTATTCTCCGTGTCCCTGAGCCCTAGCCT
GTCTCCCACGGCCTTTTATGACGCCCTGGATGTGTTCAAAGGCCCCTCTC
TGGGCACCAATTTCACCTTGGCCTGCCCCTACACCCTCTTGGCCCACTAC
TACGAATTGGATTTtgcccgccgccacggcgtcTGTCCAAATTTGGTACG
GGTCTCGGTGGGATTGGAGAGTTTCGAACACCTTCAGAAGGTCTTCGAGG
TGGCGTTAGACTCGGCCCGACGGCCCATACCGACAGGAGTGGCGCGTGAG
AAATACTTCCCGCCCGGATTGACAGGCGGGTAG

Synonyms

Publications