rna4984, rna4984 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4984
Unique Name	rna4984
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1649
Alignment location	CM002464.1:842588..845198 +

Link to JBrowse

Properties


Property Name	Value
Product	cation diffusion facilitator family
Orig transcript id	gnl\|cribi\|Naga_100222g4.2412.mrna
Orig protein id	gnl\|cribi\|Naga_100222g4.2412
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:842588..845198 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100222g4	gene4813	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4984	rna4984-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25699.1	cds4972	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:842588..845198+
coding sequence from alignment at CM002464.1:842588..845198+

mRNA sequence

>rna4984 ID=rna4984|Name=rna4984|organism=Nannochloropsis gaditana|type=mRNA|length=1649bp
CGCCCGACTACTGTCCCGTGTTGATTCAGTCCTCCCTTTTTCTCTCCCAA
GGATTGTGTTCTCGGCTAAACGATACAAGGCTTGTTACGCTCGTAATCGG
CAGTATTCATGCGAGGACTCTTCATCAGGAAAGAGATGCGGGTCGTTTTG
TTAATTGCAGGCCTCGTCAGTTTTCTGGCCGTCGGATCGAGCAGCACTTG
CCCCACACCCGGAGACAAGACGCAAATCTCGCGAGCGCCGCGACAAGGAT
CAGCTCATCTTCCGCAATGGGTAAGCAGTCGGGGAGGATTGACCCTACCC
TTCCGCCAGCAACAAATCGCACACGCCAAGACAGCGACGGTCGTAAAAGG
ACCTTCAAGCAAAGGCAAAGCCGTCGGAAAAAGAGGGAAGAGCCCCGCGG
CCATTGATGCCGGTGAAGCATATGCCACGGCCGTGCGTCGAACTCTTTTG
GCGGTGGGCGCAGCCTTCGCGTTTGGATTTGGGCTTTGGTTCATGGAAGG
TCGACAGCCGGCGATGGAATTTTTTGCCGGGTACCTGATTGAAGAGTCCT
TAAGCGTTGATAACATCTTCGTCTTCATCATGCTTTTCGAATATTTCAAG
GTCCCCATTGAATATCAATCGCGGGCCCTTTCGTGGGGAATCATGGGGGC
CGTGGCCATGCGGGGCATCATGATCTTCGTAGGGGTGGCTGCCATTCAAC
GTTTCCGGTGGGTAGTCTTGCTCTTCGCGGGGGTGTTGCTCGGGAGTGCC
TTTAAACTGCTGGCGGAGGTGGGGCACGAGGGCGGGGAGGAGGACCTGAG
CAACAATCTGCTGGTGGCATGGGCCAAGAAATTGGTTCATGCGGTGGACG
AATACGACGGAGACAATTTCTTCACGCGCAGGAACGGGAAGCGTTACGCC
ACCCCCCTTTTCATGTGCTTGATTTGCATCGAGCTCTCCGACTTCGTCTT
TGCCGTCGATTCCATACCGGCCGTGCTGGGGGTTTCCAAGGACCCTCTCA
TCGTCTACTCATCTAACATCTTCGCCATCATGGCCCTGCGTTCTCTCTAC
ACGCTCGTGGCCACGGCCGTCAACAGTTTGGAATACATCAAGCCTTCCGT
CGCCCTGGTTCTGGCCTTTGTGGGCGGGAAGATGGTCGCCGAGTTCTTCC
ACGTGGAAGTCCCGATCTCTGTCTCCTTGGCCGTCGTTATGTCCCTCTTG
GGGGGAGGGATCGGTCTGAGCTTGCTGAAGCAGAGGGTGCTTGCGAGGAG
GGATGTTTCGGGGTAAGGGAGGGGGTGCGCGGGAAAAGCGGGTGGAGGCG
GGGGGCGACGCGGAAAACGGTCGCGCGGTGTACAAATCGAGATAGGGAGA
GACCGTGGGGTCATGCGATGTCGTGCACGGTGCGCTTGTACGGTACTGTA
GTCTATTAGACTCTGGTCTGTGAGGCAGACAGTGGCGATGGATGAAAAAG
GGGGAAGGCTCTGTAGTATCTGACCTCGTTACGTGCAAAATAACCACACA
GAGAAGTCAGTGGTGCAGAGGTAATAGTGATAGGATCTTTGTACGAAACT
CGTGTTAGTATTTTTAAACGAGCAAATAAAGACAGGTGTGTGCATGCATA
CCATACGGTATCCTGATGGGTTGACCGATGGATTCTTTTCATTTACTGC

protein sequence of rna4984

>rna4984-protein ID=rna4984-protein|Name=rna4984|organism=Nannochloropsis gaditana|type=polypeptide|length=481bp
MPETGLGSEGLVIQECMTISRIDGPGYANGAGKGLRLSLDDEKTSLLRGG
EAGGPSAKHAEARDSDDNGGINGGTFTQITSTPLMAEGQSSHGHQAGQHA
ARKPSISIVDGYNSPVRRGGYRSYMEVDEEAAAGSLSRNGWTSGNNGGII
HRYGSGDAGSHVPPHACQDHCVIARRETEQAERLSNKVRFAVHASICANV
LLSMASAYAAFRSGSLAVLASLVDTLLDLISQVVLSVAEHGMRKPSDEHY
PAGRSRIEPVGVIIVSVIMGVAALELLRASVGTLVLAIAYGKLPHLDMEP
VTVGIMVCAVGVKLSLYLYSSTLAGVSGTAEALAEDHKNDIMTNSFSVLS
STVAHYYPKAWFVDPIGAIVISCLIFYNWLHVGMDHASKIVGLSAPPETL
EHISDLAGQHHAQLELDIIRAYHFGPNFLVELEVVLPWDMNVKEAHDIAL
GLQQKVEQQSFVERCFVHVDYQVRGYNEHKI

mRNA from alignment at CM002464.1:842588..845198+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4984 ID=rna4984|Name=rna4984|organism=Nannochloropsis gaditana|type=mRNA|length=2611bp|location=Sequence derived from alignment at CM002464.1:842588..845198+ (Nannochloropsis gaditana)
CCACGACCCCCCTCCATACCGTCTCGCCGGATGCCAGCGCGACGCTGTGG
ATACATGAAGCCCCACGTCCTTCAGGTCGGGGGACTTTTGGTGCAAAACA
CCGGCACGGAAGAGCACAGTAGAGTATGGAAATGAAACCCTTGTCATAAC
TGTATGCCATACGACCTCGTGGAAAGCACTTGTCGTCGGAATTCATTCAT
ATTTAACCCTCAACCAATCGACCCTCCCCTTGGCAACggccccctctctc
cgtcaCCTTGGCGCTTTTCAACCCAACTAGCCTTTTACGAACTCCTATTC
AATACCGAGACATCCTGATCGACGAATACATCCATTCTTAGAGTTTAACA
GTACATTCAGCCCTCGTTCATGGACCCACAGCTCCTTCCTTGTTTTTCCA
ACACACAGATTCTgttcccttgtctcccttcctcgcacTGGGCGGCGAAA
GACTGACCCATTCATGCCCGAGACCGGCCTGGGCTCCGAAGGATTGGTTA
TCCAAGAGTGCATGACGATCAGTAGAATTGACGGTCCTGGCTACGCAAAT
GGGGCTGGTAAAGGTTTGCGTTTGTCCTTGGACGATGAGAAAACCAGCCT
TTTacgggggggcgaggcgggcgggccgAGCGCCAAACACGCAGAGGCAC
GGGATAGCGACGACAATGGAGGAATAAACGGCGGAACGTTCACACAGATC
ACTTCAACACCTTTGATGGCGGAGGGACAATCCTCGCACGGCCACCAAGC
AGGGCAGCATGCGGCCCGCAaaccctccatttccatcgtGGACGGCTACA
ACAGTCCCGTCCGTCGCGGGGGTTATCGAAGCTACATGGAAGTAGacgag
gaagcagcggccGGGTCTTTGAGCAGAAATGGGTGGACAAGCGGAAATAA
TGGTGGGATTATCCACCGGTACGGAAGCGGGGATGCTGGGAGCCATGTTC
CTCCTCATGCTTGCCAGGATCATTGCGTGATAGCCCGACGCGAAACCGAA
CAAGCAGAGCGCTTGAGTAACAAGGTTCGCTTTGCCGTGCACGCCTCCAT
ATGTGCCAATGTTCTCCTGTCCATGGCAAGCGCGTACGCGGCCTTCCGGT
CAGGGTCCTTGGCCGTgctggcctccctcgtcgaCACTCTCTTGGATCTC
ATCTCCCAAGTAGTGCTTTCGGTAGCGGAGCACGGGATGCGGAAACCCTC
CGACGAGCATTATCCAGCGGGTCGGTCTCGGATAGAGCCTGTGGGTGTGA
TCATCGTCTCGGTCATCATGGGtgtggcggccttggaacTGTTGCGGGCG
TCGGTCGGGACCTTGGTGCTGGCCATTGCCTATGGGAAATTACCGCACTT
AGGTAGGCTGCCGGAAGGGAGGTTGatcaagaagggagggagtttgACTC
AGTTGGTGCATGGGGATGTGGTAGGGTAGGAAGAAATGCGAGGATGGAGA
GGTCCGGGGTAGGTTGCCAGAGGTAGTGGAGTAAGGGGAATCCGTCTTGG
CTTGGGTACGCTTTCCGAGAGATTTGTACCAATACTTGACAATCGCTAGT
GCCTACTAGCTAATCGTACAAAACTCCATGGAACGGTGCCCAAAGAGTCT
CCGTCTTTGGCCAAGATGATGCAGAGCTTTCTGGGTGCTCTCGGgtctct
cgccctccctggtTGCCCCGTTTCGGCTCTTTCATCTCTCATGCGCAATG
TTTCTCGCACCACCACAGACATGGAGCCGGTCACTGTTGGCATTATGGTC
TGTGCGGTTGGCGTCAAACTCTCCCTCTACCTGTACTCGAGCACCCTCGC
GGGCGTCAGCGGCACGGccgaggcgctggcggaAGACCACAAGAACGACA
TCATGACCAACTCCTTCTCGGTCCTTTCCTCAACAGTGGCCCATTATTAC
CCCAAAGCCTGGTTCGTCGACCCCATCGGCGCGATCGTCATCTCCTGCCT
CATTTTTTACAACTGGTTGCACGTAGGCATGGACCACGCGTCCAAAATCG
TCGgtctctccgcccctcctgaGACCCTGGAACACATCAGCGACCTGGCC
GGGCAGCATCACGCGCAGTTGGAGCTGGATATCATCAGGGCTTATCATTT
TGGACCGAATTTTTTGGTGGAGTTGGAAGTTGTACTTCCTTGGGATATGA
ATGTCAAAGAAGCGCACGACATCGCGCTTGGGCTGCAGCAGAAGGTGGAG
CAGCAAAGTTTCGTGGAACGGTGTTTTGTGCATGTAGACTATCAGGTGCG
GGGTTACAATGAACATAAAATATAGGACGTGAGGGGTGTAGGGGAGTtgg
gcgggagaagaaatgTACATAGGCGAGGCGAATGAATGGCAGAGGGCTGT
CGAGAATCGcgtggggtggaggacacTAGTGATGCATGATCTCGATGAAA
AGGGACGAAAAATCATGGAGCCGCAGTGTTTTCACACTTAGTGTCTGGTG
GAACGTGACACGTATATTGAAACTTTTTCGTGGACAATTATGCACAAGTA
AACACGACAAACAGACTGTGAAGGAGTTCAAAAAGTGCTTGCCAGCAACC
TTTTGCTTTTTGTGGCTGTCTAAGACAATTTGAAACTTAAGAAAAAGAAC
TAATGGTTTGT

Coding sequence (CDS) from alignment at CM002464.1:842588..845198+

>rna4984 ID=rna4984|Name=rna4984|organism=Nannochloropsis gaditana|type=CDS|length=2892bp|location=Sequence derived from alignment at CM002464.1:842588..845198+ (Nannochloropsis gaditana)
ATGCCCGAGACCGGCCTGGGCTCCGAAGGATTGGTTATCCAAGAGTGCAT
GACGATCAGTAGAATTGACGGTCCTGGCTACGCAAATGGGGCTGGTAAAG
GTTTGCGTTTGTCCTTGGACGATGAGAAAACCAGCCTTTTacgggggggc
gaggcgggcgggccgAGCGCCAAACACGCAGAGGCACGGGATAGCGACGA
CAATGGAGGAATAAACGGCGGAACGTTCACACAGATCACTTCAACACCTT
TGATGGCGGAGGGACAATCCTCGCACGGCCACCAAGCAGGGCAGCATGCG
GCCCGCAaaccctccatttccatcgtGGACGGCTACAACAGTCCCGTCCG
TCGCGGGGGTTATCGAAGCTACATGGAAGTAGacgaggaagcagcggccG
GGTCTTTGAGCAGAAATGGGTGGACAAGCGGAAATAATGGTGGGATTATC
CACCGGTACGGAAGCGGGGATGCTGGGAGCCATGTTCCTCCTCATGCTTG
CCAGGATCATTGCGTGATAGCCCGACGCGAAACCGAACAAGCAGAGCGCT
TGAGTAACAAGGTTCGCTTTGCCGTGCACGCCTCCATATGTGCCAATGTT
CTCCTGTCCATGGCAAGCGCGTACGCGGCCTTCCGGTCAGGGTCCTTGGC
CGTgctggcctccctcgtcgaCACTCTCTTGGATCTCATCTCCCAAGTAG
TGCTTTCGGTAGCGGAGCACGGGATGCGGAAACCCTCCGACGAGCATTAT
CCAGCGGGTCGGTCTCGGATAGAGCCTGTGGGTGTGATCATCGTCTCGGT
CATCATGGGtgtggcggccttggaacTGTTGCGGGCGTCGGTCGGGACCT
TGGTGCTGGCCATTGCCTATGGGAAATTACCGCACTTAGACATGGAGCCG
GTCACTGTTGGCATTATGGTCTGTGCGGTTGGCGTCAAACTCTCCCTCTA
CCTGTACTCGAGCACCCTCGCGGGCGTCAGCGGCACGGccgaggcgctgg
cggaAGACCACAAGAACGACATCATGACCAACTCCTTCTCGGTCCTTTCC
TCAACAGTGGCCCATTATTACCCCAAAGCCTGGTTCGTCGACCCCATCGG
CGCGATCGTCATCTCCTGCCTCATTTTTTACAACTGGTTGCACGTAGGCA
TGGACCACGCGTCCAAAATCGTCGgtctctccgcccctcctgaGACCCTG
GAACACATCAGCGACCTGGCCGGGCAGCATCACGCGCAGTTGGAGCTGGA
TATCATCAGGGCTTATCATTTTGGACCGAATTTTTTGGTGGAGTTGGAAG
TTGTACTTCCTTGGGATATGAATGTCAAAGAAGCGCACGACATCGCGCTT
GGGCTGCAGCAGAAGGTGGAGCAGCAAAGTTTCGTGGAACGGTGTTTTGT
GCATGTAGACTATCAGGTGCGGGGTTACAATGAACATAAAATATAGATGC
CCGAGACCGGCCTGGGCTCCGAAGGATTGGTTATCCAAGAGTGCATGACG
ATCAGTAGAATTGACGGTCCTGGCTACGCAAATGGGGCTGGTAAAGGTTT
GCGTTTGTCCTTGGACGATGAGAAAACCAGCCTTTTacgggggggcgagg
cgggcgggccgAGCGCCAAACACGCAGAGGCACGGGATAGCGACGACAAT
GGAGGAATAAACGGCGGAACGTTCACACAGATCACTTCAACACCTTTGAT
GGCGGAGGGACAATCCTCGCACGGCCACCAAGCAGGGCAGCATGCGGCCC
GCAaaccctccatttccatcgtGGACGGCTACAACAGTCCCGTCCGTCGC
GGGGGTTATCGAAGCTACATGGAAGTAGacgaggaagcagcggccGGGTC
TTTGAGCAGAAATGGGTGGACAAGCGGAAATAATGGTGGGATTATCCACC
GGTACGGAAGCGGGGATGCTGGGAGCCATGTTCCTCCTCATGCTTGCCAG
GATCATTGCGTGATAGCCCGACGCGAAACCGAACAAGCAGAGCGCTTGAG
TAACAAGGTTCGCTTTGCCGTGCACGCCTCCATATGTGCCAATGTTCTCC
TGTCCATGGCAAGCGCGTACGCGGCCTTCCGGTCAGGGTCCTTGGCCGTg
ctggcctccctcgtcgaCACTCTCTTGGATCTCATCTCCCAAGTAGTGCT
TTCGGTAGCGGAGCACGGGATGCGGAAACCCTCCGACGAGCATTATCCAG
CGGGTCGGTCTCGGATAGAGCCTGTGGGTGTGATCATCGTCTCGGTCATC
ATGGGtgtggcggccttggaacTGTTGCGGGCGTCGGTCGGGACCTTGGT
GCTGGCCATTGCCTATGGGAAATTACCGCACTTAGACATGGAGCCGGTCA
CTGTTGGCATTATGGTCTGTGCGGTTGGCGTCAAACTCTCCCTCTACCTG
TACTCGAGCACCCTCGCGGGCGTCAGCGGCACGGccgaggcgctggcgga
AGACCACAAGAACGACATCATGACCAACTCCTTCTCGGTCCTTTCCTCAA
CAGTGGCCCATTATTACCCCAAAGCCTGGTTCGTCGACCCCATCGGCGCG
ATCGTCATCTCCTGCCTCATTTTTTACAACTGGTTGCACGTAGGCATGGA
CCACGCGTCCAAAATCGTCGgtctctccgcccctcctgaGACCCTGGAAC
ACATCAGCGACCTGGCCGGGCAGCATCACGCGCAGTTGGAGCTGGATATC
ATCAGGGCTTATCATTTTGGACCGAATTTTTTGGTGGAGTTGGAAGTTGT
ACTTCCTTGGGATATGAATGTCAAAGAAGCGCACGACATCGCGCTTGGGC
TGCAGCAGAAGGTGGAGCAGCAAAGTTTCGTGGAACGGTGTTTTGTGCAT
GTAGACTATCAGGTGCGGGGTTACAATGAACATAAAATATAG

Synonyms

Publications