rna4980, rna4980 (mRNA) Nannochloropsis gaditana

Overview
Namerna4980
Unique Namerna4980
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3278
Alignment locationCM002464.1:831510..832003 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103269g1.5120.mrna
Orig protein idgnl|cribi|Naga_103269g1.5120
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:831510..832003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103269g1gene4809Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25705.1cds4968Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4980rna4980-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4980 ID=rna4980|Name=rna4980|organism=Nannochloropsis gaditana|type=mRNA|length=3278bp
ATGCGTCGTTCGGCATACTATTACAACAACTTGGACAAACTCAGCCACCG
AGGGAAATCTTCGGGTCCCGGACGCGCCGTCAAGGATAACCTCCTCCCTT
CCTCCCAGGCCGCTCCCGCCTCTACCGCTGCTGTCGCCTCCACCTCGGCC
CCCCGTCCACCCATCCACTTCGAGCTCACGAAAGGGGTGGCGGGAAGTCG
CAAGACCCAACACGCTGTGTCCGCGGCCTTCCAAGCGGGAAGTACCGGGG
CCATGAAAAACATCCTCTTCTTGGTGAAGGTGGGATCAAATGCGCAAGAG
ATACGCTCGCGCTTGGAGACCCAGATGGGCTTGGAGTTCAAGCGACACAA
GCTCACGAATCATTTTGTGGCAAGGGACAACCGATCGCCCATGCCGGACG
CGGAGGTCGTCGATGGGGGGGAAAGAGAAAGGGGAAGAGGAAGGGGTGTG
ACGCGAAGGATCTCGGCTGGGGCCACGGCAAGCTATTGGGTCGCGTCCTT
CGACGCCTTTGTGGACTGCCAGCTCCGGACGCACCCGTCCATGCAGGAAA
AGCTGAAGACGCGCGGGGCGAACTTCGAATGGAAGCGAGATGCCTTGTTG
CGGTTGATCCGGGCGGGTGCCCATGGAGGCTTTTGCCTGAAAGACGGGGC
CCTGGCGGATTTCGTGGTGGTGGACGAGGCCCAAGACCTGCGGGAGGAAG
ATATGGAGATCGTCAGCCGGCTGGTCGAGTCCGAGCACGCCCGGGACGGG
GCGTTGCGGCGGGTCTTGGTCGTGGGGGACGTGGAGCAGACCGTCTTTAG
CGACGTGCTGACCGGGCGTGGCCAAGGCCATCCCATGGACTGTCTCCATC
GGTGGATGCCGTCCGTCCCGGTCCACACGCGCCGCCTGGACATCAACTAC
CGATGCCCCCACGCCCACGTCTCCTTCAACAACCTGTCCGTGCCCCGCAA
TGCGACTCGAGGGGAGGGACTTGTCCGGCCTTCCCCGGAAATGGCGGAAC
GTGCGGTCGGTGGGCAAGACAAGCCGTACCTGTTCACGTATGTGCAGAGT
TCCTCGTCGGTCCAGAACTACGACGCCTACAGGACCGCCTGCAGGATCGC
GGAGATCGTGTTGACCTTGCTCAGGACCATGGAGGGCTTGCGGTTGCGGG
ACATCGCCATCACCAGCCGGTTTGTCAACGTGAACCTCATCCTCCTCCAG
CTCGAAGACGTCCTGGAGAGGGCCTTGGCCGAGGCGGGGTACGCCCCTTC
CGACGGGTCGGGCTGCGTGCATCTCTTTCGAACCAAAGTCACGGACCGGA
AGTCCATCAATTGGGAGGAGGCAGGAGAGCGCCTGGTCATGGGGAGTTTG
ACGGCCTTTAAGGGGAAAGACTGGAGGGCCGTGATCCTCTTGGACTGCAC
GGAAGGTGTGCTGCCGAGCAAGAGCAGCGTGCACACGCAGAAGGAACTGG
TGGACCGGTCGCTGTTCAACGTGGGCACCACGCGTTCCAAGGAGGTGCTT
CTGATCGGCTTCGACGCCAAGGCCCCCTCCCGGTACCTCTCCCACGTGCA
CGAGAGGCTTCACGAGGGGGCTCAATTGGAATGGGAGGCGAGCACGATTG
AGACGGCGGGGCCGTACGCGGCGATTTATGCGACCCGGAGGAACGATTCG
AAGAGCCTGGCGGAAGGGGTGGTGGAATGGAAGGAGGGCCGGAACCGCAC
GGTGGACGTACCTTTCAAGTACTACTGGAGCGTGACGGACTCGACGGACG
AGATCCAGACCGTGGATGACATGTTGCTGGGCGAGGAGAGCGGGGGGGAG
GACGGGGCGGAGGAAGAGGAAGGCCCTTATGCCTGGAAGGGCTTTGACCG
GTTCGGCACGCGGTTGTCCCCGCCTGCCTGGTTCAAGCAGGACGAAACGG
GGCGCTTGATCACGGGGGTCATGGGGGAGGCTTTGTTGGCGCGGGAACTC
CACGTCAAAGGCCGCTTGTCCAAGCGGGCAGACGCGACGTTGTTGTGGCC
CGTGGTGGAGAAACTCGGCGGTCGGGCGGGGGGAAGGAAGGGGAGGCCGG
TGGTCTTTACAGAGTGCCCCAAAGTGTTGAACTTGGCGGTGGACTACCAT
TTGAACGAGCTGTGGGCGTACGACGAGACGGAGCAATGGCGACAAGCCCT
GGAAATGCTCTTGGAAGACCATGGCCACGAGGCAGGCGCCAGTCGCGCGT
TTTTCCTGGAGTTGCTGGAGGGCATGCCGCGCTGTGTGTTGCATGCTGCC
TACCGAGGGCCTATTCAGACGTTTGCTCCCCTGTTGGACTACCGAATTCC
CAGCGCCGAGCTCCCCGTAGAAGCGGTCTGGAATTGTGCGGTGCTCTATC
AAGACGCCCTGTCCTACGGCTTACGGCAACCCTCTCTGGTGAAACGCTTG
TTGGAAGTAGAGGACTGCCGGACGCCGAAAGACCTTTCCAAGCTCTTGGC
GGGGCTCTCGGAGAACGTGATCGCCTACTTGGATTTTAAGCAAGCTCGAA
ATTCCACCACCTTCGCGCAGGGCAACGGGGTCTCCTTGTTGCAAAAGGAA
GTGGCGGAGACCGAACTCGAGAAGAGGGGATTCTGTCGACAGCGGGACGC
TCATGTCTTTGCGGAAGGCTGGACCTATGGACTCAACGGTCGAATCGATT
TCTACGACGAGAACCGGAAGCGGATTGTGGAGGTGAAGGTGAGCGACACA
GACGGTGTCCTTCCTTCTCACGAGGTCCAGACACTTCTCTATGCGCTTTT
GTACGGAAACGGATGGAAGCCGACGCGGGCGTTTGAAATTGTGAATTTGT
TGAAAGGCATGCGATACAAACGAGTGCTCCGTCGGAAAGTCAAATTGTGG
AATTGCCTGAGGCGGGCCTTTAAGAAGTTGGACTTTGATGACGAAATGAT
CGAGACGTTGGGCCGTGCATACGGGCCGCAGTATTGGGAGAAAAGAGATG
AGGAGGAAGGATCAGGTCCGGAAAAAGGGCTTATCGAAGAAAGTATCGAT
ATCGACAGTAAAATCTCGCGTGATATTGATTGCGAAGCGGTGCAAGATTT
ACAGCCAAGAAAGGTAAAAGTCCTGCAGGAGGCGTCCTAAAGTGCTTGGT
TTCGAGAAGGGTTATATAACAGCTACACAGGGCCCACAAATGGCGTAAGG
TTGTAAGACGATTGTGTAACAATAGCCTATCAGCACATGCAACATAGAAA
GCAAGAAACTGTACAGAATGTTTGCATGTGTGTATTTCCGCCAAAGGTTT
AATTAATATCGGCGATCGTAGCAATTGA
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protein sequence of rna4980

>rna4980-protein ID=rna4980-protein|Name=rna4980|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
GREEGRRGAWNLDYQENQMGFFLLCPHLHLLMASYPFHARQILHRQGVRR
GGEFLRRGIGSRGATALGPLQKADVGRGREGGEEEERGREEEKKMRGGVG
GKADLAYEGSARRDWEIEPSMTL
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mRNA from alignment at CM002464.1:831510..832003-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4980 ID=rna4980|Name=rna4980|organism=Nannochloropsis gaditana|type=mRNA|length=494bp|location=Sequence derived from alignment at CM002464.1:831510..832003- (Nannochloropsis gaditana)
GGGAGGGAAGAAGGGAGGAGGGGTGCATGGAACCTTGACTATCAGGAGAA
TCAGATGGGTTTCTTCCTCCTCTGCCCCCACTTGCATCTGCTGATGGCCT
CTTATCCCTTCCATGCCAGGCAAATTCTCCATCGGCAAGGTGTTCGACGA
GGAGGGGAATTTTTACGAAGAGGGATTGGCTCGAGAGGTGCAACGGCTCT
TGGACCGTTACAAAAAGCAGATGTGGGACGTGGCAGAGAAGGAGGAGAGG
AAGAGGAAAGGGGGAGAGAAGAAGAAAAAAAAATGAGGGGTGGGGTTGGT
GGGAAAGCAGATCTGGCGTACGAAGGCTCTGCCAGGCGGGACTGGGAGAT
AGAACCTTCCATGACGTTGTGAAAGAAATTAAGAATAAAGACAAGGGTTA
GAATAAAGTGGCAAGGCGCTGGCAATGAGGGACAAGGAAAGGGCTGCCTC
TGAGGGAAAGAGAACAAGTGGAGCGCCTGGGGGAGACAAGACTG
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Coding sequence (CDS) from alignment at CM002464.1:831510..832003-

>rna4980 ID=rna4980|Name=rna4980|organism=Nannochloropsis gaditana|type=CDS|length=372bp|location=Sequence derived from alignment at CM002464.1:831510..832003- (Nannochloropsis gaditana)
GGGAGGGAAGAAGGGAGGAGGGGTGCATGGAACCTTGACTATCAGGAGAA
TCAGATGGGTTTCTTCCTCCTCTGCCCCCACTTGCATCTGCTGATGGCCT
CTTATCCCTTCCATGCCAGGCAAATTCTCCATCGGCAAGGTGTTCGACGA
GGAGGGGAATTTTTACGAAGAGGGATTGGCTCGAGAGGTGCAACGGCTCT
TGGACCGTTACAAAAAGCAGATGTGGGACGTGGCAGAGAAGGAGGAGAGG
AAGAGGAAAGGGGGAGAGAAGAAGAAAAAAAAATGAGGGGTGGGGTTGGT
GGGAAAGCAGATCTGGCGTACGAAGGCTCTGCCAGGCGGGACTGGGAGAT
AGAACCTTCCATGACGTTGTGA
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Synonyms
Publications