rna4973, rna4973 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4973
Unique Name	rna4973
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1809
Alignment location	CM002464.1:806082..808391 +

Link to JBrowse

Properties


Property Name	Value
Product	aldehyde dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100154g13.6614.mrna
Orig protein id	gnl\|cribi\|Naga_100154g13.6614
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:806082..808391 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100154g13	gene4801	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4973	rna4973-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25716.1	cds4961	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:806082..808391+
coding sequence from alignment at CM002464.1:806082..808391+

mRNA sequence

>rna4973 ID=rna4973|Name=rna4973|organism=Nannochloropsis gaditana|type=mRNA|length=1809bp
AACCTTCGCCTGCTGCATACGACGGCAGTCCCGTCTATGCCCTGTCCAGT
GTGGACACCGCGTGTTGCGGGTGCGAGGGAGGATCGATGGGCCTCTAGAT
CTTTATGCTGTTGATGGAGTCGAGAGGCGAATGGTTGCATTGACATCGAA
CCCTGGCAAGGTCTTACTGCAAGCCCTACCTCTCCTCTCAATCGTGTAAA
TTAGCTTCAGAAATCAACAGGAGCAGCGAAAGCTTTCGCCGCAATTCATT
TGTTGCTCTTTTGCCCGCGATAATTGCTTGCACCCTGGCCTGTTTTGCCA
AACTTCTTGAGCCTTCTCTTCACCTTTCGTTTTGTCGCCTCTCCTACAAG
CATGGTCCATCGGTACTTCACTGGGTCTAAACGCTCTGCTTCTTACGCGT
TGGGGCTGTTTTTTATATTCCTTGTGGCTATCATTTGGGCTGGCGCTTCT
GTTCTCATCCAGCATATCTACACGGATATGCACTTCGAGTCGCCGTTCCT
TCTTACTTTCATTTGCACCAGTCTTTTCAGCGTCTACCTGCCATGGACAT
ACCTGTGTGTACGGTTAGGATGGACGAAAAATCCCCCATGGCGGGATCCT
ACCTTGGAAAGCTCCGCCAGCGCTCATGAGCGGCGACCAAACGTCCTCTA
CTCGACTGTGCACAATGGGAAAGACACCGGTCAGGGCCCTATGGCCCGTA
TCCCTGATGAACTGCCCCTTCCATCTACCGTGCTGGAAAACCCATCTGCA
AGAAGCGCCCCGGCTGAGGCCGAAGAATATTCGTCCTCCACTGAACCTCT
GCGCTGGAGTCACCTGAAAACGCTTCGGACAGCGGTCGTCGTCTTCCCCC
TCTTCTTCATCGCCAACTTCTCCTACAACCTATCCCTGGCACACACCAGC
GTGACCAGTAACACCATCATTTCCACCACGTCCTCCCTCTGGACATTCCT
CTTCTCCACTTGCCGAGGCCTGGAGCGTTTTGCCTGGGTGAAAATGGCGG
GCTTGCTCCTCTCCATGGGGGGGACCGTCTTGGTCGGGTTGGCGGATCGG
AACGGGGAGGGAACGAACTCCGTGGCCGGGGATGCCTTGTGCCTCTTCGC
CGCCATCATGTACGGCGTGTATACGACGGCGCTGAGGGTGTTGGTCCCTG
ACGACAGGAGCGTCTCCTTCCAGCTTCTCTTCGGCTACGTCGGCCTCCTC
TCCCTCCTCCTCCTCCTTCCCCCCACCCTCCTCCTCCTCCTGACCCGCGC
CCTGCCCTCCGTCTTCGCGGGCCTGTCTCTCTCCGTTCTCGGCTTCATCG
TCCTGAACGGCCTGGCCGACAACGTCCTCTCTGACTATTTGTGGGCCCGG
TCCATCGTTCTCACCTCCCCCACCGTGGCCACCGTCGGTCTCTCCCTCAC
CATTCCCCTCGCCTTCCTTTCCGACGCTGCCCTGGGTAAGGCGCATGGAG
GGCTCAAGGAGGTGCTCGGGGCCGTCGCAGTGGCTGCGGGCTTTGGCTTG
GTTAGCTGGGAGCAGAAGGAGGAGGCGGAGGCGGAGGAGGAGGAGAGGGA
AGGGAGGAGGATTCGAGCAGACGTGGGGGAGGGAAGCGAGGCTGGCATGG
GGAAGAGTGGCGGGGATCAAGGGGGAGAAGAAGCCAAGAGCATGGTGGTG
AGATGAGGTGGGAGGGCGGGAGGGAAGACAGAAGAAGTCTTGGGGGCTCC
AGGGCAGAGGCTGAAACCCCCGCTTTGTATATGGCTGGGTTCGGGGTTCG
GAGAACATTTAAAGTACCCCCATCTTTCAAGAAATGAAATCAAATCGCTC
TGGGACGAT

protein sequence of rna4973

>rna4973-protein ID=rna4973-protein|Name=rna4973|organism=Nannochloropsis gaditana|type=polypeptide|length=579bp
MQSTIFHTSLAYLPSRIHESPRFMFRKAAAARYRTVDSFLRFMSSSSVRP
QQRYAFLSDLGLSQTTTQKGVCDGYSWYASGPKHSQINPATGEVIGTVEF
GSGDDYERAVKAMLAAKEKWALTPAPVRGEVVRQIGQRIREKQHALGALV
SAEMGKILPEGIGEVQEAVDICDFAVGLSRTLNGSVIPSERPGHFMMERW
NPLQGCVGIISAFNFPCAVYFWNVALSLVCGNVNLWKPAETTSLVAIAFV
KLVQDVLKESGHDPAVATLVCGHGKEIGEALIQDPRMELVSFTGSTAVGR
HVNQVVAGRFGRALLELGGNNAMIIDRDADLDLAVRAALFGAVGTAGQRC
TSLRRLFLHADVYEEVLGRLKQAYASVKIGDPLDSQTLCGPLHRPEGVKL
FTTTVAKALEEGGKVLVGGQPWHGVEKGGMLSHGNFVQPTVVEVPATAKI
LEEEAFVPVMYVVKIKDLQEGVKMNNSVRQGLSSALFTSSPTSMFEWTGP
TGSDCGIVNVNIGTSGAEIGGAFGGNKETGWGRESGSDAWKQYTRRSTCT
INHSKELPLAQGINFGGANENGGEGKIMD

mRNA from alignment at CM002464.1:806082..808391+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4973 ID=rna4973|Name=rna4973|organism=Nannochloropsis gaditana|type=mRNA|length=2310bp|location=Sequence derived from alignment at CM002464.1:806082..808391+ (Nannochloropsis gaditana)
CAATATTGGGACAGGATCTTCTGATCCGGTGGGAACGTTTTGAATGCAAT
CCACAATTTTTCATACTTCACTTGCGTATCTCCCGTCCCGAATCCACGAA
AGCCCCCGGTTCATGTTCAGAAAAGCAGCTGCGGCCCGCTATCGTACCGT
CGACTCTTTTCTTCGTTTCATGTCATCATCTTCGGTTCGACCGCAGCAAC
GTTATGCATTTCTCAGCGACTTAGGTTTGTCGCAAACAACAACACAAAAA
GGCGTTTGCGATGGTTATTCCTGGTACGCTTCAGGTCCCAAACATTCGCA
AATTAACCCTGCAACGGGGGAGGTGATTGGGACAGTAGAGTTCGGTTCTG
GGGACGACTATGAGCGAGCTGTCAAGGCCATGCTAGCGGCCAAAGAGAAG
TGGGCACTGACCCCGGCCCCTGTCCGTGGCGAGGTCGTACGGCAGATTGG
CCAACGCATTCGAGAAAAACAACATGCACTTGGTGCCTTAGTTTCTGCAG
AAATGGGGAAAATTTTACCGGAGGGCATTGGCGAAGTCCAAGAGGCAGTT
GACATTTGCGACTTCGCCGTGGGTCTCAGCCGCACTTTGAATGGCTCGGT
CATTCCCTCCGAGCGTCCAGGCCATTTCATGATGGAACGTTGGAATCCAT
TGCAGGGTTGTGTAGGCATCATTTCCGCCTTCAATTTTCCCTGCGCCGTG
TATTTTTGGAACGTGGCACTGAGTTTGGTGTGTGGCAACGTCAACCTCTG
GAAACCCGCAGAAACGACCTCGTTGGTCGCCATCGCGTTCGTCAAGCTCG
TCCAAGACGTCCTGAAGGAATCAGGGCACGACCCGGCTGTCGCCACGTTG
GTGTGTGGACACGGCAAGGAGATTGGAGAGGCTCTCATTCAAGACCCCCG
CATGGAGCTGGTATCATTCACGGGGAGCACGGCGGTAGGTCGCCACGTGA
ACCAGGTCGTGGCCGGGCGTTTTGGACGCGCGCTTTTGGAACTGGGAGGG
AACAACGCAATGATTATTGATCGGGACGCAGACCTCGATCTTGCCGTCAG
GGCTGCCCTCTTTGGGGCCGTGGGAACGGCAGGACAACGATGCACGAGCC
TCCGGCGTTTGTTTTTGCATGCAGATGTGTACGAGGAAGTgttggggagg
ttgaagcaGGCGTACGCCTCGGTCAAGATCGGGGACCCTTTGGACTCGCA
GACGTTGTGCGGGCCTCTGCACCGTCCGGAGGGAGTCAAACTCTTTACAA
CGACCGTCgccaaggccctggaggaagggggaaaggtgcTGGTGGGGGGG
CAGCCCTGGCACggcgtggagaagggaggaatgcTCTCCCATGGTAATTT
TGTGCAACCAACCGTGGTGGAAGTCCCGGCCACGGCGAAAAttctggaag
aagaagccttTGTCCCCGTCATGTACGTGGTGAAGATCAAGGATTTGCAG
GAAGGGGTGAAGATGAACAACAGCGTCCGTCAGGGGctgtcctccgccct
tttcacctcctctcccacaagCATGTTCGAGTGGACCGGGCCCACGGGCT
CGGACTGTGGCATCGTGAACGTGAACATTGGGACAAGCGGCGCTGAGATC
GGGGGCGCGTTTGGGGGGAACAAGGAGACGGGGTGGGGCCGGGAGAGTGG
GTCCGACGCGTGGAAGCAGTACACGCGTCGATCCACCTGTACGATCAACC
ACAGCAAGGAGCTACCTTTGGCGCAAGGTATTAATTTTGGAGGGGCCAAT
GAAAATGGTGGCGAGGGGAAAATAATGGACTGAAAAGATCATTATTCAGC
GCAAGTAGAGAAAAAGAGTAGGACATGGGGGTGCGTCCGAGATGTAAAAA
AGAGGCGAGAATAAtaagaagatgaagaatgaggaaggaaaggggcccGG
ATAGAATATGTACAAGAAAAGATTAAATAAAGGCACGTGGTAGAAAGGCG
AGTGTCGTCAAACAAGCAGACCACTATGCTCGACAGCCGAGGATCACAAG
GAAATATGAGCATGTCTTGTGGTAGTAAGGCGATGTGTCACGCGAAAATA
TGGGCAATCCTTCAAAAGAGGTAACATTTATCCTGTCTAGACTAATTTAG
GTTTGTTTCCAGATTGAAATAACATGAAAAGATTTCAAAgatgaaaaaga
gaaaatcGAAGACAAAAGAGTTTGAGCAAACCAAGTCATGAACTCTTGCA
TTTGCCACAGCAACTTGCAATTTCCTTAATCAATATATTTTGCGACACTT
GATTCCTACACTTGCGCAGCGGACGGTCTGAAAACGAAGCACTATATGAA
GCACTATACC

Coding sequence (CDS) from alignment at CM002464.1:806082..808391+

>rna4973 ID=rna4973|Name=rna4973|organism=Nannochloropsis gaditana|type=CDS|length=1740bp|location=Sequence derived from alignment at CM002464.1:806082..808391+ (Nannochloropsis gaditana)
ATGCAATCCACAATTTTTCATACTTCACTTGCGTATCTCCCGTCCCGAAT
CCACGAAAGCCCCCGGTTCATGTTCAGAAAAGCAGCTGCGGCCCGCTATC
GTACCGTCGACTCTTTTCTTCGTTTCATGTCATCATCTTCGGTTCGACCG
CAGCAACGTTATGCATTTCTCAGCGACTTAGGTTTGTCGCAAACAACAAC
ACAAAAAGGCGTTTGCGATGGTTATTCCTGGTACGCTTCAGGTCCCAAAC
ATTCGCAAATTAACCCTGCAACGGGGGAGGTGATTGGGACAGTAGAGTTC
GGTTCTGGGGACGACTATGAGCGAGCTGTCAAGGCCATGCTAGCGGCCAA
AGAGAAGTGGGCACTGACCCCGGCCCCTGTCCGTGGCGAGGTCGTACGGC
AGATTGGCCAACGCATTCGAGAAAAACAACATGCACTTGGTGCCTTAGTT
TCTGCAGAAATGGGGAAAATTTTACCGGAGGGCATTGGCGAAGTCCAAGA
GGCAGTTGACATTTGCGACTTCGCCGTGGGTCTCAGCCGCACTTTGAATG
GCTCGGTCATTCCCTCCGAGCGTCCAGGCCATTTCATGATGGAACGTTGG
AATCCATTGCAGGGTTGTGTAGGCATCATTTCCGCCTTCAATTTTCCCTG
CGCCGTGTATTTTTGGAACGTGGCACTGAGTTTGGTGTGTGGCAACGTCA
ACCTCTGGAAACCCGCAGAAACGACCTCGTTGGTCGCCATCGCGTTCGTC
AAGCTCGTCCAAGACGTCCTGAAGGAATCAGGGCACGACCCGGCTGTCGC
CACGTTGGTGTGTGGACACGGCAAGGAGATTGGAGAGGCTCTCATTCAAG
ACCCCCGCATGGAGCTGGTATCATTCACGGGGAGCACGGCGGTAGGTCGC
CACGTGAACCAGGTCGTGGCCGGGCGTTTTGGACGCGCGCTTTTGGAACT
GGGAGGGAACAACGCAATGATTATTGATCGGGACGCAGACCTCGATCTTG
CCGTCAGGGCTGCCCTCTTTGGGGCCGTGGGAACGGCAGGACAACGATGC
ACGAGCCTCCGGCGTTTGTTTTTGCATGCAGATGTGTACGAGGAAGTgtt
ggggaggttgaagcaGGCGTACGCCTCGGTCAAGATCGGGGACCCTTTGG
ACTCGCAGACGTTGTGCGGGCCTCTGCACCGTCCGGAGGGAGTCAAACTC
TTTACAACGACCGTCgccaaggccctggaggaagggggaaaggtgcTGGT
GGGGGGGCAGCCCTGGCACggcgtggagaagggaggaatgcTCTCCCATG
GTAATTTTGTGCAACCAACCGTGGTGGAAGTCCCGGCCACGGCGAAAAtt
ctggaagaagaagccttTGTCCCCGTCATGTACGTGGTGAAGATCAAGGA
TTTGCAGGAAGGGGTGAAGATGAACAACAGCGTCCGTCAGGGGctgtcct
ccgcccttttcacctcctctcccacaagCATGTTCGAGTGGACCGGGCCC
ACGGGCTCGGACTGTGGCATCGTGAACGTGAACATTGGGACAAGCGGCGC
TGAGATCGGGGGCGCGTTTGGGGGGAACAAGGAGACGGGGTGGGGCCGGG
AGAGTGGGTCCGACGCGTGGAAGCAGTACACGCGTCGATCCACCTGTACG
ATCAACCACAGCAAGGAGCTACCTTTGGCGCAAGGTATTAATTTTGGAGG
GGCCAATGAAAATGGTGGCGAGGGGAAAATAATGGACTGA

Synonyms

Publications