rna4963, rna4963 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4963
Unique Name	rna4963
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1993
Alignment location	CM002464.1:781452..784130 -

Link to JBrowse

Properties


Property Name	Value
Product	putative 1-acyl-sn-glycerol-3-phosphate acyltransferase 5
Orig transcript id	gnl\|cribi\|Naga_100154g3.6610.mrna
Orig protein id	gnl\|cribi\|Naga_100154g3.6610
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:781452..784130 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100154g3	gene4791	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25712.1	cds4951	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4963	rna4963-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:781452..784130-
coding sequence from alignment at CM002464.1:781452..784130-

mRNA sequence

>rna4963 ID=rna4963|Name=rna4963|organism=Nannochloropsis gaditana|type=mRNA|length=1993bp
TTCCAGGCGTATATAACGCACGGTCTCATTTTCCTTGTTTCGCGCTCAGA
CCTCCTCCACGCAACTTTGCCGGCCTTCGTGCAGGCAAGCGAAGGGGAAG
CAAATGGGGGATGTTGCAGATATTCTAGGGGGGGCCCGTCGACCTCAAGT
CTCTGAGCGTGAAAGCCTGCTAATGGAGACTGGGCCAAAAGCAGGCGGCA
CCGGGGGAGCGGGAGGGAACAAAGGGAAACGGAAACCTGCAGGGATGAGC
CGCGAAGTCTTCAATTTGATCGGAAAAGAGGGCATGGCCCCGGTTGTGGT
GAGCAAGAAGGCGATAGGACTCAAGGACAAGAGGGAGGGCACAGCGCGGA
CCCGATGGATTTGGACAACTTTCAAAAATTCAGCACGAAAAGACCAGGAT
AAGCCCGAGGGAGGAGAAGAGGAAGGAAAGGAGGGGGAGAATAGCGGCAC
GCGCAAAGGAGGAATCTTCTATCACTGGGTAAAAGCTGCGACAGACTATC
CCGACTACCCTTTCGCACGCTTTAATGTGCAGACACCTGCGGTGGAGTTC
ACGGACGCGGAGTATAAGACGTGTTTGGCTGAGGGTGGCAAAGGCGCAGG
ATGGAGCAAAGAGGAAACGAGAGTCCTATTGGAGCTATGTCGACGCTTTG
ACCTTAGGTGGCCGGTTATATATGATCGCTTTCCTGACGCCGTCGCTGAG
TCCGTCGCAGGGTCGCCTGGGGGACCCCGCGAGCCTGCACAGAAGGAGGT
TGGAGGGCAGGAAGGCAAAGAGGAAGGGAAGGAGGAAGGGAAGAAGGAAG
GGGAAAAGGAAGGGAAGGAGGAAGGGAAGGAGGAAGGGAAGGAAGGCAGC
AAGGAGGCAGGGAAGGAAGGAGAAGCCGCCGTGATGGATGCCTCCATCTC
ACCGCGCGTCCGCTCCATCGAGGACCTGCAAGCCCGCTACTACTCCGTGC
GCAAAGCCTTGCGTCTGGCCCGTCATGCGGCAGCCGCCACAGCGGCGGCT
CAAGGGGGTGGGACGGTTGCCCCTCCCATGTTTCAGCCGGGGCTGGACGA
GGACGGGGACGCCTTTGACCATGCGTACGAGAAGACCCGGCGGGCACAGT
TGGCGCGTTTGTTCAAGCGCACGAAAGAGGAGGAACTGGAGGAGCTTCGC
CTCCGCGAAGAGCTCAAGGCCATCGACGCGGCGCTTCGACGCGTCAAGAA
AGTTCCGGTCAAGAGCCAAATTCGCGAGCCTGCGGAGGCCCGGCTTGCCT
CTGTCACCCTCCCAGCTCCCACCGGTCCAGGCATGTCCTCCCAGGGCCGC
ACGGTTCCCCTTGTCAACGAAAAATACATCCACGACGCCCGCCCCGAGCC
CAAACCCGGGCATCCCTACCTGCAATCGGCCCGACTCTCCGTCCCGATGG
CGCCCCCCCGCCTGCAGAAAGGCATGCTGCAGAAAGTCAAACAGCTCTTG
AGCGACCTTGGCCTTGCTCCCCGGCCCCTGCCCACCAAGACGGTCTGTGA
CCTCTACGACGCCCTCCGGCGGGACATGGTGGAGCTTTTCACCGTGCAGA
AGCTGGGGAGGCAGCGGGAAGCACTCTTGGAGGGATTGAAGGGAGGAGGG
GAGGCCCAGGAAGTGTTTGGGCGACAGGCGGCCCTTGGCGTGGAGCGATG
GGAGGGTGGGGCCGGGGCGGGTGGCTATCCGGGGGGAGGCGCCGTTAGGA
TGGGCTCGACAGGAAGCGGGGGGGGAGGGGGAGGGGGGGGGGGGCAAAAG
AAAATGCAACACCGCAAGGGGCAGTCCTCCATGTCGCGGCAGCACGCGGG
GGGAGGGGGGATGTACGGTCAGGCGGGTTTGGCGCACGCAGGTTCGGAAT
CGAGTCTATCCGGGGCGGAAGACAGGAAGCGGAAGCGGCCGTAGAATAGG
AAGGGTGGAGGAGGGAAGGGGAGAGAAGATGGAGGAGGGAGGGGGAAAGA
GAGAGGGCTAAGGAAGCGAAAAACAACCACGTCCAGAGCTAGT

protein sequence of rna4963

>rna4963-protein ID=rna4963-protein|Name=rna4963|organism=Nannochloropsis gaditana|type=polypeptide|length=575bp
MPTTRSTHNGHYRTMQTATSSSYSEQEGGDDDFSVKYTSLRDSPSLSQNH
SSPPPATDNSMKDSCTVKGFSNGSKSSGLSPEMNSPAAGPNVSKPRRTYG
SIMHAIIICWLVIAMSFGLNILNFLVYLTVRPWSRRTARRLIGNWFQSMW
VSVMSYLMPPSELVLSGDVFPKTMDSTRPAIIIANHQVDADFWYCWEVAR
AHQLQGQLKIILKAELSQVPVVGWGMRQFEFCFLRRNWEQDRRGLTRLLS
SFMEDGLNCALLLFPEGTTINTESLAKSHRFAQQQSRPRLKHLLLPRSTG
FAACLETMCQSSTAPPPLIYDLTVAYGGYSGEVPSWAMGYGRDRDVGVPS
VAEMVQGLIQPRVFVHVKTYQADHRLREDPQKWLDARWGEKDVRLGEFIK
HQAFTTTEATEILRPTGSRLTLVFLLFLPLILTCLLPALILLTLVVWPLV
LTAGTVHFLALLSRSALKAAVRSGGKATQGPGFGLGFPPPAAASPQQPFQ
GGRSFGDGEGGQGARGKRVGVHGSREPGPREAPRPKAQSERPPPPAAAAV
PSPSRALTAPPRRSPRRLPERSRDY

mRNA from alignment at CM002464.1:781452..784130-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4963 ID=rna4963|Name=rna4963|organism=Nannochloropsis gaditana|type=mRNA|length=2679bp|location=Sequence derived from alignment at CM002464.1:781452..784130- (Nannochloropsis gaditana)
TTTGGCGCCCTTGAATCAAGGTATCTCATCAATCGAATTATTCCCTATCC
CATTCCATCAGAATATCTCACGCAGGTGTATTTAAACGATTGTAATATCA
GGGCATCTAAGTTCACCACGATCCATCATAAAGCGTTCCTCCCTCCTGCA
TCAAGACGACTATAAGGCGGTTGGTTTCGCACCGGCAGCTTCATAAAAAA
GTGTCTTATGCCAACAACACGGTCAACTCATAATGGTCATTATCGTACAA
TGCAAACAGCCACTTCTAGCTCCTACAGTGAGCAAGAGGGCGGGGACGAT
GATTTCAGCGTCAAATACACCTCGCTCCGTGACTCCCCCTCTTTGTCACA
AAATCATAGCTCGCCCCCGCCCGCCACGGACAACAGTATGAAAGACTCCT
GCACCGTTAAGGGCTTCTCCAACGGCAGTAAATCTTCCGGCTTATCACCT
GAAATGAATTCTCCAGCTGCGGGACCCAATGTCTCAAAACCACGTCGCAC
ATATGGTTCGATTATGCATGCCATTATCATCTGTTGGCTGGTAATAGCCA
TGTCCTTCGGGCTCAACATTCTTAATTTTCTCGTGTACTTGACGGTTCGG
CCCTGGTCCCGGAGGACGGCGCGACGGCTAATAGGAAATTGGTTCCAAAG
CATGTGGGTGAGTGTCATGAGTTATCTGATGCCACCCAGCGAACTGGTGC
TCAGCGGAGACGTCTTCCCGAAGACGATGGACTCAACCCGACCCGCCATC
ATCATCGCCAACCACCAAGTGGACGCGGATTTCTGGTACTGCTGGGAAGT
AGCCCGGGCGCACCAACTACAGGGTCAGCTGAAGATCATCCTCAAAGCGG
AGCTGTCGCAAGTGCCCGTGGTGGGCTGGGGCATGCGGCAATTTGAGTTC
TGTTTCCTGCGTCGGAATTGGGAGCAGGACCGGCGGGGTCTCACCCGTCT
GCTTTCTTCCTTTATGGAGGACGGTTTGAATTGTGCCTTGCTCCTCTTCC
CCGAGGGCACTACCATCAACACGGAGTCCTTGGCGAAATCCCACCGCTTC
GCGCAGCAACAGAGCCGGCCGCGCCTAAAGCATCTCCTTCTTCCTCGGTC
CACAGGCTTCGCTGCCTGCCTTGAAACCATGTGCCAGTCGTCCACGGCCC
CCCCCCCCTTGATCTACGACCTGACCGTCGCCTATGGGGGGTATTCTGGC
GAGGTCCCGTCGTGGGCGATGGGTTACGGGCGGGACCGGGACGTGGGCGT
GCCAAGCGTGGCGGAGATGGTGCAAGGCCTGATCCAACCCCGTGTATTCG
TGCACGTCAAGACCTACCAGGCCGACCATCGCCTGCGCGAGGACCCTCAG
AAATGGTTGGACGCGCGGTGGGGGGAGAAGGACGTCCGCCTGGGGGAATT
TATCAAACACCAGGCGTTCACCACGACCGAGGCCACCGAAATCCTCCGTC
CCACGGGGAGCCGTCTCACCCTCGTCTTCCTTCTCTTCCTGCCCCTGATC
CTCACCTGCCTCCTCCCTGCCCTCATCCTTCTGACGTTGGTGGTGTGGCC
CCTGGTCCTGACCGCCGGTACCGTCCACTTCCTCGCCCTCCTCTCCCGCT
CGGCGCTGAAGGCAGCGGTCCGATCGGGCGGCAAGGCCACGCAAGGCCCG
GGCTTCGGCCTTGGTTTTCCCCCGCCAGCAGCCGCTTCCCCTCAACAACC
GTTCCAGGGCGGTCGGAGTTTCGGGGACGGGGAGGGAGGGCAGGGAGCGA
GGGGAAAGAGAGTCGGGGTACATGGAAGTCGTGAACCTGGGCCCAGGGAG
GCACCCAGGCCAAAAGCCCAGTCGGAGAGGCCACCACCCCCTGCCGCGGC
GGCCGTTCCGTCGCCGTCCCGGGCCTTGACGGCGCCTCCCCGCCGGTCAC
CGAGACGACTACCAGAACGGTCGCGTGACTATTGACACTCGTTCGCGAAC
GGCGAAGATGGCATGGGGGTACATGCACGGGGCGGTTGCTGAGTGCCTTG
GAGGGCCGGGCAAGCTTCCGAGCGACATGGACGGTCCTGGAACGCCATTG
CAGCGGCCCTTTTCAGATTGGTGCAGGTACGAAGAAGGGTGTATTCACCC
TGTGTGGCTTGGATGGGTGGCGAGGAAAAGGTTTGGCAACTGAAAAATGC
GCGAACGACGGAAGAAAAGGGGAAGCAAGGGTATTTCCCCCCCACGCCGT
CTTGCACGCTTGTCCTTCTCACGGGAAAGGCCGCTCCTGGATCATTTGTG
AGGGATCCAAGGCGGAGGACTTAACTTCGGTGTGTAAATACCGCACAAAG
GCGGCGACTTCGGTGCGAGGAAGATGGGAGAACGGGGAAGGACCTGTGGG
CGGGAGCGTGGCCTCGCGTGGAGTGCGTACGATCGAATTCTAGCGTGTCC
GCTAGGAGGGCTTTCTCAGTGAGGGCTAGGAGGGTGTAAGCAGGACCCAA
CAAGGGAAGAGCGGTGGGAGACCAGGATGGAGGGGTGAAAAGCGAGGCGT
TCGATGTAGGACGCCCGTGCTTGTTGTTCGAGACGATCACGGTCAGAGGC
AGTGGGCAGCAGAGGCGGAGACAAAAACAGTGGGAAAGGGGGTGTTTCAA
AGTGGACGAAAAGAGTGACGCTGGGAAGTTCCGTCTCCGGAGCTTGCGAA
AGAAACTGATTGCAATCAAACTGCATGGG

Coding sequence (CDS) from alignment at CM002464.1:781452..784130-

>rna4963 ID=rna4963|Name=rna4963|organism=Nannochloropsis gaditana|type=CDS|length=1728bp|location=Sequence derived from alignment at CM002464.1:781452..784130- (Nannochloropsis gaditana)
ATGCCAACAACACGGTCAACTCATAATGGTCATTATCGTACAATGCAAAC
AGCCACTTCTAGCTCCTACAGTGAGCAAGAGGGCGGGGACGATGATTTCA
GCGTCAAATACACCTCGCTCCGTGACTCCCCCTCTTTGTCACAAAATCAT
AGCTCGCCCCCGCCCGCCACGGACAACAGTATGAAAGACTCCTGCACCGT
TAAGGGCTTCTCCAACGGCAGTAAATCTTCCGGCTTATCACCTGAAATGA
ATTCTCCAGCTGCGGGACCCAATGTCTCAAAACCACGTCGCACATATGGT
TCGATTATGCATGCCATTATCATCTGTTGGCTGGTAATAGCCATGTCCTT
CGGGCTCAACATTCTTAATTTTCTCGTGTACTTGACGGTTCGGCCCTGGT
CCCGGAGGACGGCGCGACGGCTAATAGGAAATTGGTTCCAAAGCATGTGG
GTGAGTGTCATGAGTTATCTGATGCCACCCAGCGAACTGGTGCTCAGCGG
AGACGTCTTCCCGAAGACGATGGACTCAACCCGACCCGCCATCATCATCG
CCAACCACCAAGTGGACGCGGATTTCTGGTACTGCTGGGAAGTAGCCCGG
GCGCACCAACTACAGGGTCAGCTGAAGATCATCCTCAAAGCGGAGCTGTC
GCAAGTGCCCGTGGTGGGCTGGGGCATGCGGCAATTTGAGTTCTGTTTCC
TGCGTCGGAATTGGGAGCAGGACCGGCGGGGTCTCACCCGTCTGCTTTCT
TCCTTTATGGAGGACGGTTTGAATTGTGCCTTGCTCCTCTTCCCCGAGGG
CACTACCATCAACACGGAGTCCTTGGCGAAATCCCACCGCTTCGCGCAGC
AACAGAGCCGGCCGCGCCTAAAGCATCTCCTTCTTCCTCGGTCCACAGGC
TTCGCTGCCTGCCTTGAAACCATGTGCCAGTCGTCCACGGCCCCCCCCCC
CTTGATCTACGACCTGACCGTCGCCTATGGGGGGTATTCTGGCGAGGTCC
CGTCGTGGGCGATGGGTTACGGGCGGGACCGGGACGTGGGCGTGCCAAGC
GTGGCGGAGATGGTGCAAGGCCTGATCCAACCCCGTGTATTCGTGCACGT
CAAGACCTACCAGGCCGACCATCGCCTGCGCGAGGACCCTCAGAAATGGT
TGGACGCGCGGTGGGGGGAGAAGGACGTCCGCCTGGGGGAATTTATCAAA
CACCAGGCGTTCACCACGACCGAGGCCACCGAAATCCTCCGTCCCACGGG
GAGCCGTCTCACCCTCGTCTTCCTTCTCTTCCTGCCCCTGATCCTCACCT
GCCTCCTCCCTGCCCTCATCCTTCTGACGTTGGTGGTGTGGCCCCTGGTC
CTGACCGCCGGTACCGTCCACTTCCTCGCCCTCCTCTCCCGCTCGGCGCT
GAAGGCAGCGGTCCGATCGGGCGGCAAGGCCACGCAAGGCCCGGGCTTCG
GCCTTGGTTTTCCCCCGCCAGCAGCCGCTTCCCCTCAACAACCGTTCCAG
GGCGGTCGGAGTTTCGGGGACGGGGAGGGAGGGCAGGGAGCGAGGGGAAA
GAGAGTCGGGGTACATGGAAGTCGTGAACCTGGGCCCAGGGAGGCACCCA
GGCCAAAAGCCCAGTCGGAGAGGCCACCACCCCCTGCCGCGGCGGCCGTT
CCGTCGCCGTCCCGGGCCTTGACGGCGCCTCCCCGCCGGTCACCGAGACG
ACTACCAGAACGGTCGCGTGACTATTGA

Synonyms

Publications