rna4957, rna4957 (mRNA) Nannochloropsis gaditana

Overview
Namerna4957
Unique Namerna4957
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1219
Alignment locationCM002464.1:764653..765368 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100087g5.1123.mrna
Orig protein idgnl|cribi|Naga_100087g5.1123
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:764653..765368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100087g5gene4786Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4957rna4957-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25743.1cds4945Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4957 ID=rna4957|Name=rna4957|organism=Nannochloropsis gaditana|type=mRNA|length=1219bp
GCAGTGCATTACATGTTCATCCCTGCCGTCCAATGTACCATGCGGGCCTT
CTAAACTCGATAGATTCCATGCGTGCATGGCGAGGGCTGCCATTTTGGCT
TACTGCTATTTTTCCCTGTTTGTCCACAGGAGTCATCCCAGTGCTTAGTC
ACTCCGGCGCCTGAAGGCAGCAAGAGGCGCCAAAGCATGTCCTTTTTGGT
CAATACGCTCCTCGCACTATGCTTTCTTTTCATCAGCACATTTGCCTTCG
TTCCTTCGACCCCTGTTTCTTTCGGGTTCATCGACCGGATGACTCCGCAC
AAAGCCAGGACGACCGCGCTGTCTGCTGTCAAGGAGCGTACCGCCGCCTC
TGGCAAACAAGAGCAGGCACAGGAGCGCGTGGGGATCTCTGAGGACGATC
CAATGGTGCAACGCATTCGCGAAGATGTGCGCCGCGAGACCGGTGTGGAC
CTTGATCAGCTTTTAAATCCCTCCAAAGTTGTCAACTTGGAGTTCGAGCT
CATCAACCTCCGCAACGAGCGTGCCGCCGCCACGCAAGGGGGAGGAAAAG
CCTTGGCCAAGCTCGAGGCGCAAATAGAGAAGAAAGAGACGCAGTTGGCG
ACCGAAAAAAGGTTGGTCATGCGTGGATGGCTGAAGAATCTCTTTTTGGG
TCAGTCCCTCCTGGCGGTGGTGTTGTCGGGGGTGGTTGCCTATGACGCCC
TCCCCGGCTTCGAGCACTTGCCTCTACCGATCCGTGCCTTTGCCTTCTGG
AGCTTTTGGATGTTCACCATCCCGTCCCTCCGGGCCCGGCGTCCCGGGGC
CGTGGAGAAGAAGGCATTGGATGTGGCTTTCTTGCTGACGCCGGTGGTAA
GCCTCGGCATGCCCTTCCTCACGCAAGACGTGCCGACCATATGGTGGGCG
AACGCCGTGGCGACAGGGGTCAGCTATGGCTACGCCTTTGCCTTCCAGGG
GAAGGGCGAAAGGGGCGAGGGGGAGGATGGAGGAAGCGAGGAGGATGAGA
CCTTGCCAGGGCCGTTGAAGGCGGCGTTGAAGGCCCTGGATTGGGGATCC
GGGCGGGAGCGGGGCGTGCGAAAGTGAAGTGATTCGAAGAGGGCTACGGT
GTGTGGCGAGGGGTCAGGGAGGGCGTCGAAGAGGGAGCTGCCGGTGAGTG
AGGGGGACAGGTGTGAGTTAGGACGTTCTATAAAGAAATGAGAAAGAACA
CTTTGTATCCTTGGGGACG
back to top

protein sequence of rna4957

>rna4957-protein ID=rna4957-protein|Name=rna4957|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
MAAAFVKLLPWEGRKRGESGGVMEKLLVGPFSSPLNALSRCLSSPLHAST
RASITTILCTGRNRMLLGLLCGGVHLIRQEHRACLCDQRYHHPHSLFRYR
GSQPPALVPFFYLFPPHSSPAYLRFNDARLTPKAPLEGRGRTDHEQDGRQ
AGHVVQGEVGM
back to top

mRNA from alignment at CM002464.1:764653..765368-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4957 ID=rna4957|Name=rna4957|organism=Nannochloropsis gaditana|type=mRNA|length=716bp|location=Sequence derived from alignment at CM002464.1:764653..765368- (Nannochloropsis gaditana)
ATGGCCGCTGCTTTTGTTAAGCTTCTCCCTTGGGAAGGAAGGAAGAGGGG
GGAGTCGGGCGGTGTAATGGAAAAATTACTCGTAGGCCCCTTCTCATCTC
CCCTAAATGCATTAAGTAGATGTCTCAGCTCACCATTACATGCCAGCGTT
CACTAGGCTGACAATACCGCCGAACAGTCGCCATGCAGCATCAGAGCGGT
GGGGCAGGCGACAGGCCCCGCACAGGTGCAGCAGCCTCCCCAGAACCCCC
CCTCCCCGCGACGCATAGACGAGGGCCTCCATCACTACCATATTATGCAC
AGGAAGAAACCGAATGCTCCTGGGCTTGCTTTGTGTAAGTGTGCGCGTGG
TGGACCGTACGGAATGGATACATGTTGGGCAGCTGTGCTGTTATTAACGT
AGCTCCTTTCTCCCATAATCATCGTTGCCCTGCTAATTTTCAGGGAGGAG
TTCATTTGATACGCCAGGAACATCGTGCCTGTCTTTGTGATCAGCGCTAC
CATCATCCTCATTCTCTATTTCGCTATCGTGGCTCCCAACCGCCAGCACT
AGTACCGTTCTTCTACCTCTTCCCCCCTCATTCCTCCCCCGCCTATCTCC
GCTTTAATGACGCCCGGTTGACCCCGAAAGCCCCACTGGAGGGCAGGGGC
CGGACAGACCACGAGCAGGACGGGCGCCAAGCAGGGCATGTGGTACAGGG
GGAGGTGGGCATGTAA
back to top

Coding sequence (CDS) from alignment at CM002464.1:764653..765368-

>rna4957 ID=rna4957|Name=rna4957|organism=Nannochloropsis gaditana|type=CDS|length=1458bp|location=Sequence derived from alignment at CM002464.1:764653..765368- (Nannochloropsis gaditana)
GGAGGAGTTCATTTGATACGCCAGGAACATCGTGCCTGTCTTTGTGATCA
GCGCTACCATCATCCTCATTCTCTATTTCGCTATCGTGGCTCCCAACCGC
CAGCACTAGTACCGTTCTTCTACCTCTTCCCCCCTCATTCCTCCCCCGCC
TATCTCCGCTTTAATGACGCCCGGTTGACCCCGAAAGCCCCACTGGAGGG
CAGGGGCCGGACAGACCACGAGCAGGACGGGCGCCAAGCAGGGCATGTGG
TACAGGGGGAGGTGGGCATGTAAACGAGGGCCTCCATCACTACCATATTA
TGCACAGGAAGAAACCGAATGCTCCTGGGCTTGCTTTGTATGGCCGCTGC
TTTTGTTAAGCTTCTCCCTTGGGAAGGAAGGAAGAGGGGGGAGTCGGGCG
GTGTAATGGAAAAATTACTCGTAGGCCCCTTCTCATCTCCCCTAAATGCA
TTAAGTAGATGTCTCAGCTCACCATTACATGCCAGCGGAGGAGTTCATTT
GATACGCCAGGAACATCGTGCCTGTCTTTGTGATCAGCGCTACCATCATC
CTCATTCTCTATTTCGCTATCGTGGCTCCCAACCGCCAGCACTAGTACCG
TTCTTCTACCTCTTCCCCCCTCATTCCTCCCCCGCCTATCTCCGCTTTAA
TGACGCCCGGTTGACCCCGAAAGCCCCACTGGAGGGCAGGGGCCGGACAG
ACCACGAGCAGGACGGGCGCCAAGCAGGGCATGTGGTACAGGGGGAGGTG
GGCATGTAAACGAGGGCCTCCATCACTACCATATTATGCACAGGAAGAAA
CCGAATGCTCCTGGGCTTGCTTTGTATGGCCGCTGCTTTTGTTAAGCTTC
TCCCTTGGGAAGGAAGGAAGAGGGGGGAGTCGGGCGGTGTAATGGAAAAA
TTACTCGTAGGCCCCTTCTCATCTCCCCTAAATGCATTAAGTAGATGTCT
CAGCTCACCATTACATGCCAGCGGAGGAGTTCATTTGATACGCCAGGAAC
ATCGTGCCTGTCTTTGTGATCAGCGCTACCATCATCCTCATTCTCTATTT
CGCTATCGTGGCTCCCAACCGCCAGCACTAGTACCGTTCTTCTACCTCTT
CCCCCCTCATTCCTCCCCCGCCTATCTCCGCTTTAATGACGCCCGGTTGA
CCCCGAAAGCCCCACTGGAGGGCAGGGGCCGGACAGACCACGAGCAGGAC
GGGCGCCAAGCAGGGCATGTGGTACAGGGGGAGGTGGGCATGTAAACGAG
GGCCTCCATCACTACCATATTATGCACAGGAAGAAACCGAATGCTCCTGG
GCTTGCTTTGTATGGCCGCTGCTTTTGTTAAGCTTCTCCCTTGGGAAGGA
AGGAAGAGGGGGGAGTCGGGCGGTGTAATGGAAAAATTACTCGTAGGCCC
CTTCTCATCTCCCCTAAATGCATTAAGTAGATGTCTCAGCTCACCATTAC
ATGCCAGC
back to top
Synonyms
Publications