rna4944, rna4944 (mRNA) Nannochloropsis gaditana

Overview
Namerna4944
Unique Namerna4944
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1654
Alignment locationCM002464.1:728947..730942 +

Link to JBrowse

Properties
Property NameValue
Productd-aminoacid aminotransferase-like plp-dependent enzyme-like protein
Orig transcript idgnl|cribi|Naga_100087g20.1108.mrna
Orig protein idgnl|cribi|Naga_100087g20.1108
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:728947..730942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100087g20gene4773Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4944rna4944-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25728.1cds4932Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4944 ID=rna4944|Name=rna4944|organism=Nannochloropsis gaditana|type=mRNA|length=1654bp
CCCCCAGCGGATGGGGCGAGGTCCCCCGTACACAGCGTGGATGGATGGCT
TTTCACGGAGGCGCGTCTCTGTGACCTTTGTCAGAAACTAATCGTTTCCC
TCACCCTCTGGAGCTGGGCGTGACTGATTTTCCACGTTCTGCACGCTTCA
GGCACGCATTGTGGGACCTGGAGGCAGGGGGGGACGGGGAAGGAGAACAT
TCAGTCCTTCCAAAGCGATGGGGCTTCAACCGGGATTGGAAAGGCCCACC
TTCCGGCGACCTATTTTGCCATCCTACCTTTATTTCCTCCTTTTCTCCAT
GCAGCCAATTATCGCCACGAGTTTCTCCGCAGGCACTCTCACCAGCCTGA
CACCTCAAAATCCCCCTCCCCCTGCCAGTGGGGTGAGCGTGAGGAAGACA
CCACGGCAGTTCCTAATGGAACGCCCTCCCGGTCCTTACACATGTTTGCG
GGCTCGAGACGAGTCTCTACTAGGTTTTGACTTTCATTTCCAACGATTAT
TGCACGGGATTGAGTCCTCGGTCGGGTGTATGAGCCCTGTGAATGCAGGG
GAGTTGCGGAAGCGTGTGTTAAATGTGATCGAAGAGGCATTGACGGAGGC
ATCGCAGCAACACCCTAGTGAAGACGGGAAAGAAGGGTCGACGGGGTCGA
CTGAAAAATTGAGAGATTTTTTTGTGACGGTGCACATTGACGAGTCATCC
ATCGTGTTACCTTCCTCCACCTCGGGCGTGGCTTTGAGCGCGCACGCGGT
GTCCATGCCGTACGCCGTCATGCCGCCACCCGTTACCTTGGAAATCCGAG
GTGAAGGACGGAGGTCGCCGGACGTTAAGCATTCGCAGTGGCTGAGGGAC
CGACAAGGCCTGGAGCGCTTCCGTGTCGGGCCAGGGGGCGAAGTTGCCCT
TTCCCGGTCACTACCAGCGGGACGGGGGGAGGAAGAAGGGAAGGCGGGGA
AGGCCGGAAGGGAGGTGCTCGAGGGTCTGGTAAGCAACATCTTTGTGGTC
AAGGGTGGGAAGCTTCTGACTGCGAGCGATGGGATTTTGCCAGGGCACAT
GCGTACCATGGCGTTGAGAGCCGCGGAGGCACTGGGCGTGCCCGTGGGCG
ATCCGGAGGAGAAAATATTGTTAGAGGACATCTTGGAGTGGGAGGAGGCG
TTTCTGACGGGCTCAGGACGCGTTCTGGTGCCGATCGGGAGGGTGGAAGG
GACCAGCGTGGGTCTTCCCCCGGTGGATTTAGCGGCCGCGCCGGGGCCCA
TCACCAACCTGGTGCGTGCCCGCTTGTTGTACGATATGGAGGATGGCTGG
GAAAACCTCAGGTCGCTGGCAAGCCGTTGAGCAAGAGTGGGGTAAAGGAG
GGCAAGATTGCCTCTAGATATGGACAGAACGTTTTGTTTAGTCGGTGGAA
ATACAATACGCTGATGGAAAGGAAAAGGAGATTACAAATTGATTCGATGA
AATAACGGACGCAGGGTGACGAAGTCCCTTCTAGATATTGATTGTTCTGT
CTCGGGCGGGGTCCTCCGCATCCTTGTCATTTAAAAGAGCGCCAAAGATA
TGCCTCCTGCCTCCCTGCGTGGGACGGAAATGGGGGAAGCTCGCATGGAC
CATCAATTTCTTTGATTAGTTTGTCAGGACGTGAAAGCACCTGAGCTCGT
TCCA
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protein sequence of rna4944

>rna4944-protein ID=rna4944-protein|Name=rna4944|organism=Nannochloropsis gaditana|type=polypeptide|length=370bp
MGLQPGLERPTFRRPILPSYLYFLLFSMQPIIATSFSAGTLTSLTPQNPP
PPASGVSVRKTPRQFLMERPPGPYTCLRARDESLLGFDFHFQRLLHGIES
SVGCMSPVNAGELRKRVLNVIEEALTEASQQHPSEDGKEGSTGSTEKLRD
FFVTVHIDESSIVLPSSTSGVALSAHAVSMPYAVMPPPVTLEIRGEGRRS
PDVKHSQWLRDRQGLERFRVGPGGEVALSRSLPAGRGEEEGKAGKAGREV
LEGLVSNIFVVKGGKLLTASDGILPGHMRTMALRAAEALGVPVGDPEEKI
LLEDILEWEEAFLTGSGRVLVPIGRVEGTSVGLPPVDLAAAPGPITNLVR
ARLLYDMEDGWENLRSLASR
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mRNA from alignment at CM002464.1:728947..730942+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4944 ID=rna4944|Name=rna4944|organism=Nannochloropsis gaditana|type=mRNA|length=1996bp|location=Sequence derived from alignment at CM002464.1:728947..730942+ (Nannochloropsis gaditana)
cccccagcGGATGGGGCGAGGTCCCCCGTACACAGCGTGGATGGATGGCT
TTTCACGGAGGCGCGTCTCTGTGACCTTTGTCAGAAACTAATCGTTTCCC
TCACCCTCTGGAGCTGGGCGTGACTGATTTTCCACGTTCTGCACGCTTCA
GGCACGCATTGTGGGacctggaggcagggggggacggggaaggagaacat
TCAGTCCTTCCAAAGCGATGGGGCTTCAACCGGGATTGGAAAGGCCCACC
TTCCGGCGACCTATTTTGCCATCCTACCTttatttcctccttttctccat
GCAGCCAATTATCGCCACGAGTTTCTCCGCAGGCACTCTCACCAGCCTGA
CACCTCAaaatccccctccccctgccagTGGGGTGAGCGTGAGGAAGACA
CCACGGCAGTTCCTAATGGAACGCCCTCCCGGTCCTTACACATGTTTGCG
GGCTCGAGACGAGTCTCTACTAGGTTTTGACTTTCATTTCCAACGATTAT
TGCACGGGATTGAGTCCTCGGTCGGGTGTATGAGCCCTGTGAATGCAGGG
GAGTTGCGGAAGCGTGTGTTAAATGTGATCGAAGAGGCATTGACGGAGGC
ATCGCAGCAACACCCTAGTGAAgacgggaaagaagggtcGACGGGGTCGA
CTGAAAAATTGAGAGATTTTTTTGTGACGGTGCACATTGACGAGTCATCC
ATCGTGttaccttcctccacctcgggcGTGGCTTTGAGCGCGCACGCGGT
GTCCATGCCGTACGCCGTCATGCCGCCACCCGTTACCTTGGAAATCCGAG
GTGAAGGACGGAGGTCGCCGGACGTTAAGCATTCGCAGTGGCTGAGGGAC
CGACAAGGCCTGGAGCGCTTCCGTGTCGGGCCAGGGGGCGAAGTTGCCCT
TTCCCGGTCACTACCagcgggacggggggaggaagaagggaaggcgggga
aggccggaAGGGAGGTGCTCGAGGGTCTGGTAAGCAACATCTTTGTGGTC
AAGGGTGGGAAGCTTCTGACTGCGAGCGATGGGATTTTGCCAGGGCACAT
GCGTACCATGGCGTTGAGAGCCGCGGAGGCACTGGGCGTGCCCGTGGGCG
ATCCGGAGGAGAAAATATTGTTAGAGGACATCttggagtgggaggaggcg
tttcTGACGGGCTCAGGACGCGTTCTGGTGCCGAtcgggagggtggaagg
gaccAGCGTGGGTCTTCCCCCGGTGGATTTAGCGGCCGCGCCGGGGCCCA
TCACCAACCTGGTGCGTGCCCGCTTGTTGTACGATATGGAGGATGGCTGG
GAAAACCTCAGGTCGCTGGCAAGCCGTTGAGCAAGAGTGGGTAAGCGGGG
GGATGGAAAGCACTGGGAGAGCATGCACGAACTGGGTGACAAGCACCAGG
GCGTTCCTACTCCtcagcggggggggggggggtatgGTTCGTTTTCCAGC
CGTGTCTTGCCGCCTTATGACAATTAAAAGGGCTTCCTGGTTCCCGTGGA
CGCATGCTTTTACGAGAAGGACGGTAGAAAAAACTCCATCGAGGGAGAAG
ACTCTTTCCATTCCACGGGTCTACCACGGTGGCACGTTTGGATTTCCAAG
GGAGTGTACATCCTTTTCTGCTTGAGCGTATGGGCAAATATGGCACTACT
CACTCTTTctactcctctcctcccccccgcagggtaaaggagggcaagat
tGCCTCTAGATATGGACAGAACGTTTTGTTTAGTCGGTGGAAATACAATA
CGCtgatggaaaggaaaaggagattACAAATTGATTCGATGAAATAACGG
ACGCAGGGTGACGAAGTCCCTTCTAGATATTGATTGTTCTGTCTCGGGCG
GGGTCCTCCGCATCCTTGTCATTTAAAAGAGCGCCAAAGATatgcctcct
gcctccctgcgtGGGACGGAAATGGGGGAAGCTCGCATGGACCATCAATT
TCTTTGATTAGTTTGTCAGGACGTGAAAGCACCTGAGCTCGTTCCA
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Coding sequence (CDS) from alignment at CM002464.1:728947..730942+

>rna4944 ID=rna4944|Name=rna4944|organism=Nannochloropsis gaditana|type=CDS|length=1113bp|location=Sequence derived from alignment at CM002464.1:728947..730942+ (Nannochloropsis gaditana)
ATGGGGCTTCAACCGGGATTGGAAAGGCCCACCTTCCGGCGACCTATTTT
GCCATCCTACCTttatttcctccttttctccatGCAGCCAATTATCGCCA
CGAGTTTCTCCGCAGGCACTCTCACCAGCCTGACACCTCAaaatccccct
ccccctgccagTGGGGTGAGCGTGAGGAAGACACCACGGCAGTTCCTAAT
GGAACGCCCTCCCGGTCCTTACACATGTTTGCGGGCTCGAGACGAGTCTC
TACTAGGTTTTGACTTTCATTTCCAACGATTATTGCACGGGATTGAGTCC
TCGGTCGGGTGTATGAGCCCTGTGAATGCAGGGGAGTTGCGGAAGCGTGT
GTTAAATGTGATCGAAGAGGCATTGACGGAGGCATCGCAGCAACACCCTA
GTGAAgacgggaaagaagggtcGACGGGGTCGACTGAAAAATTGAGAGAT
TTTTTTGTGACGGTGCACATTGACGAGTCATCCATCGTGttaccttcctc
cacctcgggcGTGGCTTTGAGCGCGCACGCGGTGTCCATGCCGTACGCCG
TCATGCCGCCACCCGTTACCTTGGAAATCCGAGGTGAAGGACGGAGGTCG
CCGGACGTTAAGCATTCGCAGTGGCTGAGGGACCGACAAGGCCTGGAGCG
CTTCCGTGTCGGGCCAGGGGGCGAAGTTGCCCTTTCCCGGTCACTACCag
cgggacggggggaggaagaagggaaggcggggaaggccggaAGGGAGGTG
CTCGAGGGTCTGGTAAGCAACATCTTTGTGGTCAAGGGTGGGAAGCTTCT
GACTGCGAGCGATGGGATTTTGCCAGGGCACATGCGTACCATGGCGTTGA
GAGCCGCGGAGGCACTGGGCGTGCCCGTGGGCGATCCGGAGGAGAAAATA
TTGTTAGAGGACATCttggagtgggaggaggcgtttcTGACGGGCTCAGG
ACGCGTTCTGGTGCCGAtcgggagggtggaagggaccAGCGTGGGTCTTC
CCCCGGTGGATTTAGCGGCCGCGCCGGGGCCCATCACCAACCTGGTGCGT
GCCCGCTTGTTGTACGATATGGAGGATGGCTGGGAAAACCTCAGGTCGCT
GGCAAGCCGTTGA
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Synonyms
Publications