rna493, rna493 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna493
Unique Name	rna493
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1330
Alignment location	CM002455.1:1231384..1234304 +

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Properties


Property Name	Value
Product	Saccharopine dehydrogenase / Homospermidine synthase
Orig transcript id	gnl\|cribi\|Naga_100090g2.8847.mrna
Orig protein id	gnl\|cribi\|Naga_100090g2.8847
Gene	SdH
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1231384..1234304 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
SdH	gene474	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna493	rna493-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30198.1	cds493	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1231384..1234304+
coding sequence from alignment at CM002455.1:1231384..1234304+

mRNA sequence

>rna493 ID=rna493|Name=rna493|organism=Nannochloropsis gaditana|type=mRNA|length=1330bp
GGTGACGAACGACAACATCGGACAAAATGCTTCCCTCCTTTTTCACAAAC
ACATCACAAAAATTAACCTACTGCACAAACAGTGAGTATGCAACATTCTT
GGAGAACTGCAGCATTCCATTCTGCTCGTCGTCGGAAGGTGGGAGCAAGT
TCCTTTTCAACCTCCTCCACCAACCAGGAGGAAACAAGCACTTTGCTTGC
GTGCGCCCTCGACAGGGTGAGACTAGAAGGCACTTCCACAGGAACCAACC
TCATTGCTTATTCCGGGGGGGTCGATTCCAGCCTAGTCGCTGCATTGGTG
CGGCAGGTCTTCCCAAGCAACTCGGTCGCCTGCATCGGCTTGTCAGCATC
ACTGCCCGACAATCAACTTACCCTGGCACGTCAAGTTGCGGCCCACATTG
GAATCCCGTTGCGGGAGGTCCCAACATACGAGGGTGCTGCGCCGGAGTAC
GTTGCTAACCGGGGAATGAGCTGTTTTCATTGCAAAAATCATTTGTACAC
GGCCCTACAAGCTGTGGCTGCAGTGGCAGGGACGCACATGAACGGCCCCC
TGTCAAGCAACTTTTTGCATTCCAGTCAAAGAAGGAGCACAGAAACTCTT
CAACATGTCAAATTGAACGGTGCTGACGCTTCCGCACCGTCAGCGGTCGC
GCTGTTCAACGGCACCAACGCGGACGACCGTCGGGACCCCACCAGGGTGG
GGCTCAAGGCGGCAACGAAGTTCAAGGTGCGAAGCCCGATAGACCATTTG
ACCAAAGGAGAGGTTCGATTATTAGCCAAGGCGATGAATCTGCCCAATTG
GCGGCATGCTGCAAGCCCCTGTTTGCGATCACGGCTCGCGTTCGGGGTCC
CAGCCCTGGAAGCTCATTTACGCAGAGTTGAGACCGCGGAAAGAATAGTA
AAGGCGACGCTGGGGGGAAAGCTCGACGATAAAGAGGGAGAAAGCGGGTT
GAGCAAGCTAGGTGTTCACCACAATGTGCGGGTCAGACTCATGGCGCGAG
GGAAGGCAATGATCGAGCTGGATGTGGAGCTACTTGAGATTGCTGCGTCA
TATTTATCCACGTTTGAAGGACGATTTAAAAAGGAGCTGGGCTTTACCGA
AGTCAGTTTACGAGCGTTTAAGAGCGGGAGTGTGAGTAGTGTCACGAAAG
TTGCCAGCGGGACGGAGGGAGGGGGGAAAGGAGCGAAGCAGCCTGGGAGG
AAGAAAGGTAATGGAGTGGCCATCTATCAGTCGGAATGAAGCTGCTGGTC
TCATCTTTGATCCTGTCAAGCGACAATGACAGCGGACAGGTGTATTTAAC
ATGTAAAGAATTCATGCCAGAATTGCAAGG

protein sequence of rna493

>rna493-protein ID=rna493-protein|Name=rna493|organism=Nannochloropsis gaditana|type=polypeptide|length=352bp
MSLESKKNGVDTFDDVEFVPMDHEDRIGLLAALASHRPDLIIHTAGPFQR
RTAPEVLKAALILKVPYVDVCDDIHLAQLAKGYDGAARKGNVPCLISTGV
WPGISSLMAVDVAEAVGGIEATDKIEFEFFTSGSGGAGTTILSATFLILS
EKVLAYVNGRPHYYDAASDFRKADFGKGIGLRQVFRMNLLEAFSCHRVLG
VPNVSTFFGTAPKGWNYLLKGMAMLPAKILQDRALMQALAVVSEPLVRLV
DTLVGTANAMRVTATSKGGTESATALYAHEDLETCVGEGIAAFAAQVLDG
KVAPGVWYPEEAFASLEGRRDVFRLATKGCSNWERPAGIDARGRQSVAQS
CT

mRNA from alignment at CM002455.1:1231384..1234304+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna493 ID=rna493|Name=rna493|organism=Nannochloropsis gaditana|type=mRNA|length=2921bp|location=Sequence derived from alignment at CM002455.1:1231384..1234304+ (Nannochloropsis gaditana)
AATTGGGCAGATTCATCGCCTTGGCTAATAATCGAACCTCTCCTTTGGTC
AAATGGTCTATCGGGCTTCGCACCTTGAACTTCGTTGCCGCCTTGAGCCC
CACCCTGGTGGGGTCCCGACGGTCGTCCGCGTTGGTGCCGTTGAACAGCG
CGACCGCTGACGGTGCGGAAGCGTCAGCACCGTTCAATTTGACATGTTGA
AGAGTTTCTGTGCTCCTTCTTTGACTGGAATGCAAAAAGTTGCTTGACAG
GGGGCCGTTCATGTGCGTCCCTGCCACTGCAGCCACAGCTTGTAGGGCCG
TGTACAAATGATTTTTGCAATGAAAACAGCTCATTCCCCGGTTAGCAACG
TACTCCGGCGCAGCACCCTCGTATGTTGGGACCTCCCGCAACGGGATTCC
AATGTGGGCCGCAACTTGACGTGCCAGGGTAAGTTGATTGTCGGGCAGTG
ATGCTGACAAGCCGATGCAGGCGACCGAGTTGCTTGGGAAGACCTGCCGC
ACCAATGCAGCGACTAGGCTGGAATCGACCCCCCCGGAATAAGCAATGAG
GTTGGTTCCTGTGGAAGTGCCTTCTAGTCTCACCCTGTCGAGGGCGCACG
CAAGCAAAGTGCTTGTTTCCTCCtggttggtggaggaggttgaaaagGAA
CTTGCTCCCACCTTCCGACGACGAGCAGAATGGAATGCTGCAGTTCTCCA
AGAATGTTGCATACTCACTGTTTGTGCAGTAGGTTAATTTTTGTGATGTG
TTtgtgaaaaaggagggaagcattTTGTCCGATGTTGTCGTTCGTCACCG
TAACGTTGACGGTGAGCATCGATCCGCATGATCTCGGTCCTAACCACCTG
CGGTCGGAAAATAACCCAGCATTCAAAACACACGCACGCACAGGGTCACT
CTACAGAACTTGTTTTGTGGTGGTGCAGCAGCACGCCCTTTCCTTAAGGT
TCAAGCACTACTACTTCGAGCCACCGCCTTCATTTCGTTCAGGtaaacct
cccctccctcaaccgAGGAAAGACAATAGAAATTCAGATGCGCTCGTTGC
CGATTACCTCCTTCATGGCCTTTACAATGGTCGCAAATGCATTTACTATG
atggcgcccccccctcttccgggTTTGGATCATGCGCCAAAGCGTGTCTT
GGTCATCGGGGCAACAGGTCGAGTTGGGGGGTCGACGGTTCGGGCCCTTC
GTAGGCTTCCCGGAGGCACGAAAAACCTTATCAGCGTCGGTGGTCGAAAT
GCAGCCAAGTTTAAGAAAGCCAAAGAGCGATGGATGAGCTTAGAGTCGAA
GAAAAACGGTGTGGACACGTTCGACGACGTGGAGTTCGTCCCCATGGACC
ATGAGGATCGGATAGGACTTTTGGCAGCTTTGGCCTCGCACCGGCCTGAC
TTAATCATACACACCGCTGGGCCCTTTCAGCGACGGACGGCTCCTGAAGT
TCTCAAAGCGGCTCTTATTTTGAAAGTACCGTACGTGGATGTGTGTGACG
ACATACACCTCGCACAGCTCGCCAAAGGCTACGATGGGGCGGCGCGGAAA
GGAAACGTGCCCTGTCTAATTTCCACCGGCGTGTGGCCGGGAATATCGTC
TCTTATGGCAGTCGATGTAGCTGAAGCCGTAGGCGGAATCGAGGCCACCG
ACAAGATCGAATTTGAGTTTTTTACCTCAGGAAGTGGAGGTGCAGGCACG
ACAATTTTGAGTGCCACGTTTTTAATATTGTCGGAGAAGGTCCTGGCCTA
CGTCAACGGTCGCCCACACTACTATGACGCAGCTTCAGACTTTCGAAAGG
CCGACTTTGGGAAAGGGATTGGGCTGCGACAAGTGTTCCGCATGAATCTG
CTCGAGGCTTTCAGTTGCCACCGAGTCTTGGGGGTGCCAAACGTGTCGAC
TTTCTTCGGAACAGCGCCAAAGGGTTGGAACTATCTACTGAAAGGCATGG
CCATGCTTCCCGCCAAGATTTTGCAAGACCGAGCGTTGATGCAGGCCTTG
GCTGTAGTGTCGGAGCCCTTGGTCCGCCTTGTGGACACGCTGGTAGGAAC
TGCAAATGCAATGCGCGTAACAGCGACGAgtaagggaggaacggagtCCG
CAACAGCCCTGTATGCCCACGAGGATTTGGAAACttgcgtgggggagggc
atcGCCGCTTTTGCGGCGCAAGTGCTTGATGGCAAGGTGGCTCCTGGTGT
ATGGTACCCGGAGGAGGCATTTGCTTCTTTGGAAGGTAGAAGAGACGTTT
TTCGATTGGCGACCAAAGGATGTTCAAATTGGGAGCGCCCAGCTGGGATA
GATGCAAGGGGACGTCAAAGCGTTGCACAATCGTGCACATGACCGGGCCT
GGGATGATGGCGGGACTGATGTATGAAGGTAATGGTTAATGCATGAAATA
AATGTGACGCATGTATTTGTAGCTACAGCTCTCAGACGCGTCTCTTTTGT
GGTGAAACTAGTAAGAAAATCGTGAtcttttcaatttttctGTCTTACGA
GGAGCGCTGATTCTTTCTCTTCATTTCAAACCGGCCATTCGACATCAGGA
ATTAAAGATTAAATTTAAATAAACCTCATGATGATATATTTCTAATAAAA
CGAAATGAAATTTATGCTTAGCAGCAGTATCCTGTTCCCAGCCTTCGCAA
CACGTTGAAAAACTAGGACTGAAATCCGGCAAGGTATGTCGTGGCTTGCG
GAATGAACAAGGGATAAAATCTGACGCACTGGAATTGAGGTCTCAATCAA
ATTGATAAGGTGTAAAAAATATTTGTGTAGGTTTTTCATCAGAGGGATAA
CCTACGCTATGCATCAAATTGTGTTATCAAAATAATTAGGAATTTCAGTA
GAGTAACGACATCGGATTGTAAATCCTAGCTCGCAGCGACTTCAAcgccg
ggaaggaaaaaaaactgTCCT

Coding sequence (CDS) from alignment at CM002455.1:1231384..1234304+

>rna493 ID=rna493|Name=rna493|organism=Nannochloropsis gaditana|type=CDS|length=1059bp|location=Sequence derived from alignment at CM002455.1:1231384..1234304+ (Nannochloropsis gaditana)
ATGAGCTTAGAGTCGAAGAAAAACGGTGTGGACACGTTCGACGACGTGGA
GTTCGTCCCCATGGACCATGAGGATCGGATAGGACTTTTGGCAGCTTTGG
CCTCGCACCGGCCTGACTTAATCATACACACCGCTGGGCCCTTTCAGCGA
CGGACGGCTCCTGAAGTTCTCAAAGCGGCTCTTATTTTGAAAGTACCGTA
CGTGGATGTGTGTGACGACATACACCTCGCACAGCTCGCCAAAGGCTACG
ATGGGGCGGCGCGGAAAGGAAACGTGCCCTGTCTAATTTCCACCGGCGTG
TGGCCGGGAATATCGTCTCTTATGGCAGTCGATGTAGCTGAAGCCGTAGG
CGGAATCGAGGCCACCGACAAGATCGAATTTGAGTTTTTTACCTCAGGAA
GTGGAGGTGCAGGCACGACAATTTTGAGTGCCACGTTTTTAATATTGTCG
GAGAAGGTCCTGGCCTACGTCAACGGTCGCCCACACTACTATGACGCAGC
TTCAGACTTTCGAAAGGCCGACTTTGGGAAAGGGATTGGGCTGCGACAAG
TGTTCCGCATGAATCTGCTCGAGGCTTTCAGTTGCCACCGAGTCTTGGGG
GTGCCAAACGTGTCGACTTTCTTCGGAACAGCGCCAAAGGGTTGGAACTA
TCTACTGAAAGGCATGGCCATGCTTCCCGCCAAGATTTTGCAAGACCGAG
CGTTGATGCAGGCCTTGGCTGTAGTGTCGGAGCCCTTGGTCCGCCTTGTG
GACACGCTGGTAGGAACTGCAAATGCAATGCGCGTAACAGCGACGAgtaa
gggaggaacggagtCCGCAACAGCCCTGTATGCCCACGAGGATTTGGAAA
CttgcgtgggggagggcatcGCCGCTTTTGCGGCGCAAGTGCTTGATGGC
AAGGTGGCTCCTGGTGTATGGTACCCGGAGGAGGCATTTGCTTCTTTGGA
AGGTAGAAGAGACGTTTTTCGATTGGCGACCAAAGGATGTTCAAATTGGG
AGCGCCCAGCTGGGATAGATGCAAGGGGACGTCAAAGCGTTGCACAATCG
TGCACATGA

Synonyms

Publications