rna4927, rna4927 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4927
Unique Name	rna4927
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	609
Alignment location	CM002464.1:687380..689797 -

Link to JBrowse

Properties


Property Name	Value
Product	acidocalcisomal pyrophosphatase
Orig transcript id	gnl\|cribi\|Naga_100162g1.1256.mrna
Orig protein id	gnl\|cribi\|Naga_100162g1.1256
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:687380..689797 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100162g1	gene4757	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4927	rna4927-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25757.1	cds4915	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:687380..689797-
coding sequence from alignment at CM002464.1:687380..689797-

mRNA sequence

>rna4927 ID=rna4927|Name=rna4927|organism=Nannochloropsis gaditana|type=mRNA|length=609bp
ATGGCTTCCTGTCACATGCCGGTGTCAAAAGGAACTGCCAGGCCTCGCTA
CCACAGCTCCCCATTAAGTTTCACCATCATATGTCTCATCAACATGCCAG
CAGTTTTGCTTCTGATAGGTTTATACTCTGCAATTGTACTATCGCAGCTA
ACAAGCGCCTTTTTGTTGCCCACCGCAAGCAACACGCCTTATTTGGGAGG
CTCAAGCGCTACGACAGGAAGCTTGTTTCGCGTGCATCCTGATCTGGGCC
GACGCCTGCTTTTTAGCGCAAGGCACACAAGACAAAAGCAACCAACAAGT
CTCATGACAGACGTGATGGTTTTTGAGAGAAACTCGAGTAATGACGGTAC
TGAGACGGATTCTATTTTTGGTGAACCGTCCCTAAATGCCTTGTCGGCGC
TAGAAAAGGAGGAAGAGCGCGTGCTAAGTTTGCACACGTTGGAGGTTCCC
TTGCAAGACGATCCTGGAACCTATCGAGACTTTCTAGAAACCTACTTTAA
AGGGTCGACGATTCTCCGTTGGCATCTGGGATCTGTGGACACAGTCAAGC
GGGTAGCGCATGCGGAAGTTGTTGTAGTCAGCCCATCGAATTTGAGGCCG
CCTAGCTGA

protein sequence of rna4927

>rna4927-protein ID=rna4927-protein|Name=rna4927|organism=Nannochloropsis gaditana|type=polypeptide|length=338bp
MKRVASVNTINRLTKVQEGEHDTVDYRVHSLDHNQERISLWHELPLFAVD
DDAKPTGALNFICEIPKFTRRKFEICTTEAGNPIKQDQKNGKPRVFSKGD
IFFNYGCFPRTWEDPQHVPEDVGVGGDNDPLDVCEIGLRQIPTGAVRQVK
VLGVLCLIDDGEADWKVIAIDEEDRWARELNDVQDVERLLPGTLDAVREW
FRTYKIPDGKPENRFALGEEFMGVKYTMRVIRETHEAWKRLVKSSGGWRG
DLSREASSQSLHRNLSVPSLEELDIDSDHQAVCALLGEEAASKACGSLGG
PPPPGLRGGEDVGRGRDGPGPEGGGERGRGSGGEGGCP

mRNA from alignment at CM002464.1:687380..689797-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4927 ID=rna4927|Name=rna4927|organism=Nannochloropsis gaditana|type=mRNA|length=2418bp|location=Sequence derived from alignment at CM002464.1:687380..689797- (Nannochloropsis gaditana)
CTGCGACAACTTCATTTATGCCTTGTGCTCAAACTAGTAGGTACCCATGT
CCGCACAGTACGTGGCGGTGGCGGACTGAAAACGTCGTTAAGTAAGCGGA
GATACCAGATCGATCCGCTACTCGACGAAGTGGTCCGATATTCCATGTAC
GCTTCACGCATGTCTGAGAAAGATCAAGAAAAGACTCATTTTACATATGA
AGGACTGCATGGTCTGGTCGCGCTTCCAATGCGATGACCAAACATGTCGA
ATCTCCACAGAATATTTGGGGGATCGCGTCGCCCATGCGTTTCTGGCCGT
GACGTGCGAGCCTCTGGGGCAGTACCCAAGCTTACGAACGACTGATGAAT
TTGATTGACAAATCTAAAAAGGCACACACTGAATATTTTTTACCTCCATA
TTGATGATTCAACACCTAATACCGAAGCCTCAGCCTTGCTGCGCGCCGCG
GCGTGAAGAGAGGGTCAGGAAGTCGCCAGTTTGGAAGGACCGAGCCACCC
TTGGACCCCGCAATCAGGGCCATGAAGCGTGTGGCCTCCGTCAATACAAT
CAACCGCCTGACTAAGGTCCAGGTACGCGCATAGTCCCGGCTATTGTCTC
ACGACGATGATATTGCTGAGTAGGATGTCTCTGAGGGGATGTGACACGAA
ATAGGAATCACTCCGATCGTTGAGTCGAATAATTCCATAGTTAATCAAAA
TTGCATATTGGCCGTCACTGACCAAATAATAGGTCAGAAAGTAAAGCACA
TAAAGCTCAGTTCATAATCTGATAACTAGACTCAGTATGGCTTCGTCTAT
TTTTACTATATAGCTCAAAGGACGACTCGATCTTTTTCCACTATACACCT
CTCATACCTCTTGCGATACAGGAAGGAGAGCACGACACTGTGGATTACCG
CGTCCATTCCCTTGATCACAACCAGGAGCGTATTTCGCTTTGGCATGAGC
TGCCACTGTTTGCAGTCGACGACGACGCCAAGCCCACAGGCGCTCTCAAC
TTTATTTGCGAGATGTAAGTATGCCGGAACAGTGATGTGTTTCGTGCATT
AACCACAGTCGCGGGGTAGCGTAGCACACGTGAACTAATGTATGAATTCA
CTCTTGGCTTTTTTTCTTGTCTTGCTCTCCTTTAACGTGCGATTGGAACC
CGATCGCTCCGTATCTAGCCCCAAATTTACCCGCCGCAAGTTCGAAATTT
GCACGACGGAGGCCGGCAATCCCATCAAGCAAGACCAGAAGAACGGAAAA
CCCCGAGTGTTCTCAAAGGGGGATATTTTTTTTAACTATGGTTGCTTCCC
TCGCACCTGGGAGGATCCGCAGCATGTTCCCGAAGACGTAGGGGTGGGTG
GGGACAACGATCCCTTGGACGTCTGCGAGATTGGGCTCCGGCAGATCCCG
ACGGGGGCGGTGAGGCAGGTCAAGGTCCTGGGCGTCCTCTGCCTCATCGA
CGACGGCGAGGCGGATTGGAAGGTGATCGCCATCGACGAGGAGGACCGGT
GGGCACGGGAATTGAACGACGTGCAGGACGTGGAGAGGCTGCTCCCGGGC
ACCTTGGACGCAGTGCGGGAGTGGTTCCGGACCTATAAAATCCCCGATGG
AAAGCCCGAAAACAGGTTCGCACTGGGCGAGGAGTTTATGGGCGTCAAGT
ACACGATGCGCGTGATTCGAGAGACGCACGAGGCTTGGAAACGCCTGGTC
AAGTCCTCGGGCGGGTGGCGGGGGGACCTGAGCAGGGAGGCGTCCTCCCA
GTCCCTTCACAGGAACCTCTCCGTCCCGTCCCTGGAGGAGCTGGACATCG
ACTCGGACCACCAGGCCGTCTGCGCCCTGCTGGGGGAGGAGGCCGCGTCC
AAGGCCTGCGGGTCGCTGGGAGGGCCCCCCCCCCCTGGCTTGCGTGGAGG
TGAAGATGTCGGCCGCGGGCGGGATGGGCCTGGGCCTGAAGGAGGGGGTG
AAAGAGGGCGTGGCAGTGGCGGGGAAGGAGGCTGTCCCTAACTTGGTGGC
TGTGGACGGGGCGCTGGAGTTTTAGTGAAGGGGGACAAGCGAGGGGGCGG
GGTGCCACCGGAGGTGGGGTTCGATGCGGAGGGGGCCCGCGTTCAGGAGC
CACGGAAATTGTGGGAGGGGCGGGGCGGAGGTATAGAGAGCGAGCACCGA
GCGTTTCGTGTCTTTCATGGGAGCGATGGGGAGGGAAGAAGGTAAACCTC
GCCGTTGGTCAGAGGATACGGAGGAGGGCGGACGGGCTCCCTCTAGACTC
CGGAGGAAAGAGCCAAAGGGCCGACTGGACCGTCGGGGGGCGGGTCATCG
GTCTCGGCGTGGGAGGTCGCATCTTGAGCGCGCGAGGGCGGGCGCGCGGG
TGGGAAAAAAGCAAGGGGTGTATGACTGGGTGTGTGCAATTAGAAGCAAT
CACAACATGACACATTTC

Coding sequence (CDS) from alignment at CM002464.1:687380..689797-

>rna4927 ID=rna4927|Name=rna4927|organism=Nannochloropsis gaditana|type=CDS|length=3051bp|location=Sequence derived from alignment at CM002464.1:687380..689797- (Nannochloropsis gaditana)
CCCCAAATTTACCCGCCGCAAGTTCGAAATTTGCACGACGGAGGCCGGCA
ATCCCATCAAGCAAGACCAGAAGAACGGAAAACCCCGAGTGTTCTCAAAG
GGGGATATTTTTTTTAACTATGGTTGCTTCCCTCGCACCTGGGAGGATCC
GCAGCATGTTCCCGAAGACGTAGGGGTGGGTGGGGACAACGATCCCTTGG
ACGTCTGCGAGATTGGGCTCCGGCAGATCCCGACGGGGGCGGTGAGGCAG
GTCAAGGTCCTGGGCGTCCTCTGCCTCATCGACGACGGCGAGGCGGATTG
GAAGGTGATCGCCATCGACGAGGAGGACCGGTGGGCACGGGAATTGAACG
ACGTGCAGGACGTGGAGAGGCTGCTCCCGGGCACCTTGGACGCAGTGCGG
GAGTGGTTCCGGACCTATAAAATCCCCGATGGAAAGCCCGAAAACAGGTT
CGCACTGGGCGAGGAGTTTATGGGCGTCAAGTACACGATGCGCGTGATTC
GAGAGACGCACGAGGCTTGGAAACGCCTGGTCAAGTCCTCGGGCGGGTGG
CGGGGGGACCTGAGCAGGGAGGCGTCCTCCCAGTCCCTTCACAGGAACCT
CTCCGTCCCGTCCCTGGAGGAGCTGGACATCGACTCGGACCACCAGGCCG
TCTGCGCCCTGCTGGGGGAGGAGGCCGCGTCCAAGGCCTGCGGGTCGCTG
GGAGGGCCCCCCCCCCCTGGCTTGCGTGGAGGTGAAGATGTCGGCCGCGG
GCGGGATGGGCCTGGGCCTGAAGGAGGGGGTGAAAGAGGGCGTGGCAGTG
GCGGGGAAGGAGGCTGTCCCTAAGAAGGAGAGCACGACACTGTGGATTAC
CGCGTCCATTCCCTTGATCACAACCAGGAGCGTATTTCGCTTTGGCATGA
GCTGCCACTGTTTGCAGTCGACGACGACGCCAAGCCCACAGGCGCTCTCA
ACTTTATTTGCGAGATATGAAGCGTGTGGCCTCCGTCAATACAATCAACC
GCCTGACTAAGGTCCAGCCCCAAATTTACCCGCCGCAAGTTCGAAATTTG
CACGACGGAGGCCGGCAATCCCATCAAGCAAGACCAGAAGAACGGAAAAC
CCCGAGTGTTCTCAAAGGGGGATATTTTTTTTAACTATGGTTGCTTCCCT
CGCACCTGGGAGGATCCGCAGCATGTTCCCGAAGACGTAGGGGTGGGTGG
GGACAACGATCCCTTGGACGTCTGCGAGATTGGGCTCCGGCAGATCCCGA
CGGGGGCGGTGAGGCAGGTCAAGGTCCTGGGCGTCCTCTGCCTCATCGAC
GACGGCGAGGCGGATTGGAAGGTGATCGCCATCGACGAGGAGGACCGGTG
GGCACGGGAATTGAACGACGTGCAGGACGTGGAGAGGCTGCTCCCGGGCA
CCTTGGACGCAGTGCGGGAGTGGTTCCGGACCTATAAAATCCCCGATGGA
AAGCCCGAAAACAGGTTCGCACTGGGCGAGGAGTTTATGGGCGTCAAGTA
CACGATGCGCGTGATTCGAGAGACGCACGAGGCTTGGAAACGCCTGGTCA
AGTCCTCGGGCGGGTGGCGGGGGGACCTGAGCAGGGAGGCGTCCTCCCAG
TCCCTTCACAGGAACCTCTCCGTCCCGTCCCTGGAGGAGCTGGACATCGA
CTCGGACCACCAGGCCGTCTGCGCCCTGCTGGGGGAGGAGGCCGCGTCCA
AGGCCTGCGGGTCGCTGGGAGGGCCCCCCCCCCCTGGCTTGCGTGGAGGT
GAAGATGTCGGCCGCGGGCGGGATGGGCCTGGGCCTGAAGGAGGGGGTGA
AAGAGGGCGTGGCAGTGGCGGGGAAGGAGGCTGTCCCTAAGAAGGAGAGC
ACGACACTGTGGATTACCGCGTCCATTCCCTTGATCACAACCAGGAGCGT
ATTTCGCTTTGGCATGAGCTGCCACTGTTTGCAGTCGACGACGACGCCAA
GCCCACAGGCGCTCTCAACTTTATTTGCGAGATATGAAGCGTGTGGCCTC
CGTCAATACAATCAACCGCCTGACTAAGGTCCAGCCCCAAATTTACCCGC
CGCAAGTTCGAAATTTGCACGACGGAGGCCGGCAATCCCATCAAGCAAGA
CCAGAAGAACGGAAAACCCCGAGTGTTCTCAAAGGGGGATATTTTTTTTA
ACTATGGTTGCTTCCCTCGCACCTGGGAGGATCCGCAGCATGTTCCCGAA
GACGTAGGGGTGGGTGGGGACAACGATCCCTTGGACGTCTGCGAGATTGG
GCTCCGGCAGATCCCGACGGGGGCGGTGAGGCAGGTCAAGGTCCTGGGCG
TCCTCTGCCTCATCGACGACGGCGAGGCGGATTGGAAGGTGATCGCCATC
GACGAGGAGGACCGGTGGGCACGGGAATTGAACGACGTGCAGGACGTGGA
GAGGCTGCTCCCGGGCACCTTGGACGCAGTGCGGGAGTGGTTCCGGACCT
ATAAAATCCCCGATGGAAAGCCCGAAAACAGGTTCGCACTGGGCGAGGAG
TTTATGGGCGTCAAGTACACGATGCGCGTGATTCGAGAGACGCACGAGGC
TTGGAAACGCCTGGTCAAGTCCTCGGGCGGGTGGCGGGGGGACCTGAGCA
GGGAGGCGTCCTCCCAGTCCCTTCACAGGAACCTCTCCGTCCCGTCCCTG
GAGGAGCTGGACATCGACTCGGACCACCAGGCCGTCTGCGCCCTGCTGGG
GGAGGAGGCCGCGTCCAAGGCCTGCGGGTCGCTGGGAGGGCCCCCCCCCC
CTGGCTTGCGTGGAGGTGAAGATGTCGGCCGCGGGCGGGATGGGCCTGGG
CCTGAAGGAGGGGGTGAAAGAGGGCGTGGCAGTGGCGGGGAAGGAGGCTG
TCCCTAAGAAGGAGAGCACGACACTGTGGATTACCGCGTCCATTCCCTTG
ATCACAACCAGGAGCGTATTTCGCTTTGGCATGAGCTGCCACTGTTTGCA
GTCGACGACGACGCCAAGCCCACAGGCGCTCTCAACTTTATTTGCGAGAT
ATGAAGCGTGTGGCCTCCGTCAATACAATCAACCGCCTGACTAAGGTCCA
G

Synonyms

Publications