rna4926, rna4926 (mRNA) Nannochloropsis gaditana

Overview
Namerna4926
Unique Namerna4926
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length501
Alignment locationCM002464.1:683367..683975 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100168g1.5634.mrna
Orig protein idgnl|cribi|Naga_100168g1.5634
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:683367..683975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100168g1gene4756Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25772.1cds4914Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4926rna4926-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4926 ID=rna4926|Name=rna4926|organism=Nannochloropsis gaditana|type=mRNA|length=501bp
ATGTGGCGACAGCAACTAGCCTCCCTGGCGCGTCTCCCGTCCTCATCTAT
TTCTTCATGCAAGAATGGCCCCACCAACCGCCTGCTCGCCTCCTCCGCTG
CCTCTTCAGAGCCCCTTTCTCCGCCCAGTAAATCCCCTTCCTACAAATAT
TTGATCCCTGGAAGCCTTCTGCAAGACGCTCCGAACCCCGTGCAGCGGGC
GTTGAGCATAGAGAATGCGGACGCGCCCGAGCGAAAGCAAGCCGAGAAGC
AAGAGTTCATTGAAAAATTTGGAGTGCGACCAGGAGACACGGGATCGACC
TCTGTGCAGGTGGCATGTTTGACCGTGCGCATAAAGCACGTCAAGGACCA
CTGCAATGCAAACAAGCAGGACAAGGCAGCGCGTCGCGGTTATACAGCCT
TGCTGACCAGACGGCGCACCCTCATGAAGTATTTGCGGCGAAAAGACTTT
GCATCTTATCAAAACGTGATCAAGGAATTGGGCCTGACGGGTTTCACTTA
A
back to top

protein sequence of rna4926

>rna4926-protein ID=rna4926-protein|Name=rna4926|organism=Nannochloropsis gaditana|type=polypeptide|length=202bp
MASCHMPVSKGTARPRYHSSPLSFTIICLINMPAVLLLIGLYSAIVLSQL
TSAFLLPTASNTPYLGGSSATTGSLFRVHPDLGRRLLFSARHTRQKQPTS
LMTDVMVFERNSSNDGTETDSIFGEPSLNALSALEKEEERVLSLHTLEVP
LQDDPGTYRDFLETYFKGSTILRWHLGSVDTVKRVAHAEVVVVSPSNLRP
PS
back to top

mRNA from alignment at CM002464.1:683367..683975-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4926 ID=rna4926|Name=rna4926|organism=Nannochloropsis gaditana|type=mRNA|length=609bp|location=Sequence derived from alignment at CM002464.1:683367..683975- (Nannochloropsis gaditana)
ATGGCTTCCTGTCACATGCCGGTGTCAAAAGGAACTGCCAGGCCTCGCTA
CCACAGCTCCCCATTAAGTTTCACCATCATATGTCTCATCAACATGCCAG
CAGTTTTGCTTCTGATAGGTTTATACTCTGCAATTGTACTATCGCAGCTA
ACAAGCGCCTTTTTGTTGCCCACCGCAAGCAACACGCCTTATTTGGGAGG
CTCAAGCGCTACGACAGGAAGCTTGTTTCGCGTGCATCCTGATCTGGGCC
GACGCCTGCTTTTTAGCGCAAGGCACACAAGACAAAAGCAACCAACAAGT
CTCATGACAGACGTGATGGTTTTTGAGAGAAACTCGAGTAATGACGGTAC
TGAGACGGATTCTATTTTTGGTGAACCGTCCCTAAATGCCTTGTCGGCGC
TAGAAAAGGAGGAAGAGCGCGTGCTAAGTTTGCACACGTTGGAGGTTCCC
TTGCAAGACGATCCTGGAACCTATCGAGACTTTCTAGAAACCTACTTTAA
AGGGTCGACGATTCTCCGTTGGCATCTGGGATCTGTGGACACAGTCAAGC
GGGTAGCGCATGCGGAAGTTGTTGTAGTCAGCCCATCGAATTTGAGGCCG
CCTAGCTGA
back to top

Coding sequence (CDS) from alignment at CM002464.1:683367..683975-

>rna4926 ID=rna4926|Name=rna4926|organism=Nannochloropsis gaditana|type=CDS|length=609bp|location=Sequence derived from alignment at CM002464.1:683367..683975- (Nannochloropsis gaditana)
ATGGCTTCCTGTCACATGCCGGTGTCAAAAGGAACTGCCAGGCCTCGCTA
CCACAGCTCCCCATTAAGTTTCACCATCATATGTCTCATCAACATGCCAG
CAGTTTTGCTTCTGATAGGTTTATACTCTGCAATTGTACTATCGCAGCTA
ACAAGCGCCTTTTTGTTGCCCACCGCAAGCAACACGCCTTATTTGGGAGG
CTCAAGCGCTACGACAGGAAGCTTGTTTCGCGTGCATCCTGATCTGGGCC
GACGCCTGCTTTTTAGCGCAAGGCACACAAGACAAAAGCAACCAACAAGT
CTCATGACAGACGTGATGGTTTTTGAGAGAAACTCGAGTAATGACGGTAC
TGAGACGGATTCTATTTTTGGTGAACCGTCCCTAAATGCCTTGTCGGCGC
TAGAAAAGGAGGAAGAGCGCGTGCTAAGTTTGCACACGTTGGAGGTTCCC
TTGCAAGACGATCCTGGAACCTATCGAGACTTTCTAGAAACCTACTTTAA
AGGGTCGACGATTCTCCGTTGGCATCTGGGATCTGTGGACACAGTCAAGC
GGGTAGCGCATGCGGAAGTTGTTGTAGTCAGCCCATCGAATTTGAGGCCG
CCTAGCTGA
back to top
Synonyms
Publications