rna4924, rna4924 (mRNA) Nannochloropsis gaditana

Overview
Namerna4924
Unique Namerna4924
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1623
Alignment locationCM002464.1:680124..681841 +

Link to JBrowse

Properties
Property NameValue
Productsolute carrier family 25 member 45
Orig transcript idgnl|cribi|Naga_100168g3.5626.mrna
Orig protein idgnl|cribi|Naga_100168g3.5626
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:680124..681841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100168g3gene4754Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4924rna4924-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25764.1cds4912Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4924 ID=rna4924|Name=rna4924|organism=Nannochloropsis gaditana|type=mRNA|length=1623bp
ATACAGGTTGCTAGCTTGGGTTGTAGTTGAGTAAGTAGCCAGGCTTGCAA
GGATTGCGGCATCGGTCACTCAGCGTTCCTCCGATTGCGTCCACCTTCGC
AAGCAGCGTCGTAGACCTGTCGGTCCCCGTAGCCCTCCTCTGCAGAAAGC
AGTATGATCTCTGCAATCTTTCTGGTAAATCAGAAGGGGGAGGTCGTGGT
CAATCGACTGTATCGGGACGATGTTAGCCGGTCAATGGTGGACACGTTCC
GACACAAGGTTATTGCTTCGAAAGAGACGGGCTCCCAGGCCCCAATCAAG
GTCATCGAGAATGCGACCTTCCTGTACATCCGCCACCACCATCTGTACCT
GGTTGCTGTCACGCGTTCCAACTTAAACCCTGCACTCGTGTTTGAATTCC
TATTTCGAATGGTCCGCATCTTCAAAGCGTACTTTGGAGAGCATTTTGAC
GAGAGCGCGGTTCGAAATCATTTTACGTTGGTTTACGAGCTCCTAGATGA
GACCATGGATTTCGGCTACCCACAGAACTGCGCCATTGAGGTCCTGCGGC
AATACATTAACCTTGGAACGGTTCAGGCGGAGATGGAGCAGCAAGAGCCG
ACGGTGCTGACGTCTCAGATCACGGGCCAGATCGATTGGCGGCGAGACGG
AATCCGGTATCGGAAGAATGAGGTGTACATCGACGTGCTCGAGTCCGTGA
ACATCCTCATGTCCGCCACCGGCAACGTCCTGCATTCCGATGTGACCGGT
CAGATCGTGATGAAGGCCTTGTTGTCGGGTTGGCCGGAGTGCAAGTTTGG
CCTCAACGACAAGCTGATCATGGACAGGGAGGCCGCCGGCAAAGCCAGTG
GCGCCGTGACACGCCGGAGCGCAGGTGTGGAGATCGACGACTGCACATTT
CACCGCTGTGTCCGCCTGGGGCGCTTTGACGCGGATAGGACCATCACCTT
CATTCCCCCCGACGGCGAGTTCGAGCTAATGCGCTACCGCGTGACCGAGA
ACGTGAACCTTCCCTTTCGGCTGATTCCGGCCATCCAAGAGGAGGGACGC
AACCGTGTGGCTGTGAATGTCAAGGTCACCGCCAACTTCTCCTCCAAGTT
GTTCGGTCAGAACGTGGTCATCAAGGTCCCTGTCCCCCCCAACACGGCCA
AGACCCATATCAACGTCTCCACGGGCCGGGCGCGCTTTGAGCCCGAGCAC
CGAGCTCTGGTCTGGCGGATTAAGCGCTTCCCCGGGGGCTGCGAGTTCAT
GATTACCGCCGACGTCACCCTCATGCCCAGCACCAGCAACAAGGCCTGGT
CGCGCCCCCCCATCCAGGTGGAGTTCCAGGTACCCATGTTCACGTCCTCA
GGGGTACACGTCCGCTTCCTGCGCGTCTACGACAAGAGCGGATATCAAAC
AAACCGCTGGGTGCGATACATAACCAGAGCTGGTTCATTCTCGGTACGCA
TTTAGCGTGAGATATGAAGTTCAAGGCAACTGGGCCCTGATAGGATGATG
AAAATGTTTATTGGGTATTTTTGTAAAGGAAACTCAACATGGTCGAACAG
GAGAAGGTCCTGGGGTTCAATAACACACGTCTCTCGTCGACTAAAGAACT
CATCCGTTAACATCAGGAGGAAC
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protein sequence of rna4924

>rna4924-protein ID=rna4924-protein|Name=rna4924|organism=Nannochloropsis gaditana|type=polypeptide|length=345bp
MDELAAQELEIHENKAGEIVPTLHSFVAGCAGGVVSLAVGQPFDTIKVRL
QASTKFKGAIDCLRRLLATEGPLALFKGMSSPVLSASFVNAIVFTSYNET
MTLIKKTDPEARKRPTYEQVFLAGSVAGALQCSVLTPSELIKCRLQTDMT
RPRSQGLLSCIREVYREGGLRAFFNGFGPTLVRDLPAFGCYFALYEVVKD
KLEGRGASPWLSSSVAGGFAGCFSWIIVYPVDVIKTVMQTQRGTGPRHGM
LETGLRLWRTEGLGVFFRGASIAMVRALPVNCIVFPVYEWTVEFLGKIDS
LHSTRWPVKLLPSAPDVGETGTGGLRNVDSDGVDARTDGEKISAT
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mRNA from alignment at CM002464.1:680124..681841+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4924 ID=rna4924|Name=rna4924|organism=Nannochloropsis gaditana|type=mRNA|length=1718bp|location=Sequence derived from alignment at CM002464.1:680124..681841+ (Nannochloropsis gaditana)
GCGCAGTGTTGAGGTACGGGGGGCGATGGACACGAAAATGAGCGGGGCAT
GGGGGCCAACGATCAGTCACTCCCCGCAACAGCTCTGCTGTAAAGACTAG
GAAGATGCATTCACGATCACTTTTTTTTTACGCTTACGCCATCGCCGACA
GGCACTTgacaggaaaggaagacacTCTACCACGAATCCGAACCATACCA
TTGACAatttgtccctcctcccgtagATAGCAGCAAGAAGGGTGCATTGT
GAATGTGGCCTCGACCAGAGGACGCGGTTTCTAAGTTGTTTTAAGGAACA
GCCACTGCTGCGACAACAGATCAATCTGAATTTGTTCCGCTCTACGCCGA
TCCGTGTACTTCTGTTTCAGCCATAGGCACGCTGCCTAGGAAGGAATGGA
TGAGCTCGCTGCTCAAGAGCTTGAGATCCATGAGAATAAAGCGGGAGAAA
TTGTCCCCACACTACACTCTTTTGTGGCGGGGTGCGCAGGAGGGGTTGTT
TCCCTCGCTGTCGGCCAGCCCTTTGACACCATCAAAGTCCGTCTCCAAGC
CTCGACAAAATTCAAAGGCGCGATAGACTGTTTGCGACGACTCCTAGCGA
CAGAAGGGCCTCTGGCGCTTTTCAAGGGCATGTCTTCCCCGGTGCTCTCC
GCATCTTTTGTCAACGCCATCGTCTTCACGTCTTACAACGAGACCATGAC
ACTCATAAAAAAGACCGACCCGGAGGCTCGGAAGAGGCCCACCTACGAAC
AGGTCTTCTTGGCAGGCTCCGTGGCTGGCGCGCTTCAGTGCTCAGTGTTG
ACCCCCAGCGAGCTGATCAAATGCCGCCTGCAGACAGACATGACGCGGCC
CCGCTCCCAGGGCCTGCTCTCCTGCATCCGGGAGGTGTATCGGGAGGGCG
GATTGCGAGCTTTCTTCAACGGCTTCGGGCCCACCTTGGTCCGTGATTTA
CCTGCCTTCGGCTGTTACTTCGCCCTGTACGAGGTAGTCAAGGACAAgtt
ggagggcaggggagccTCCCCctggctctcttcctccgtggcgGGCGGGT
TCGCCGGTTGCTTCTCCTGGATCATCGTCTACCCTGTTGACGTAATTAAG
ACGGTGATGCAGACGCAGCGGGGAACTGGGCCAAGGCACGGGATGTTGGA
GACAGGGTTGAGGCTATGGAGGACAGAGGGCTTGGGCGTCTTCTTCCGGG
GAGCCTCGATCGCCATGGTGCGCGCATTGCCTGTCAACTGCatcgtcttc
cccgtctACGAATGGACGGTGGAGTTTCTGGGAAAGATTGACAGCCTGCA
CAGCACGCGGTGGCCGGTCAAACTGCTCCCATCCGCCCCAGATGTCGGAG
AGACTGGCACCGGCGGCCTTAGGAATGTCGACTCCGACGGCGTGGATGCC
CGCACCGACGGCGAGAAGATCTCTGCCACATGAGCACTGTGGCGAATCTC
ACAAGAAAAGAATTGTAATTTATAGGCGCATGACCCTGTCCGCCCAAGCT
GAGATCCTTTAGAGAGATTAGGTGGCTGTTAAAGAAAGGCAAACTTTCTT
GACGTGCAACATCTTGGGAGGTTTACGAGTCCAACCTGTACAGAGGTCGA
AGTAGCTTAGCCTGTTTACATagagtggaaggggagatcCTGAAAGTTCT
TCTATTAGGCTGCCAGCCATATGTCCACTCAAAATAATGATGCTTCAACA
AACTGACCATCGTAACTT
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Coding sequence (CDS) from alignment at CM002464.1:680124..681841+

>rna4924 ID=rna4924|Name=rna4924|organism=Nannochloropsis gaditana|type=CDS|length=1038bp|location=Sequence derived from alignment at CM002464.1:680124..681841+ (Nannochloropsis gaditana)
ATGGATGAGCTCGCTGCTCAAGAGCTTGAGATCCATGAGAATAAAGCGGG
AGAAATTGTCCCCACACTACACTCTTTTGTGGCGGGGTGCGCAGGAGGGG
TTGTTTCCCTCGCTGTCGGCCAGCCCTTTGACACCATCAAAGTCCGTCTC
CAAGCCTCGACAAAATTCAAAGGCGCGATAGACTGTTTGCGACGACTCCT
AGCGACAGAAGGGCCTCTGGCGCTTTTCAAGGGCATGTCTTCCCCGGTGC
TCTCCGCATCTTTTGTCAACGCCATCGTCTTCACGTCTTACAACGAGACC
ATGACACTCATAAAAAAGACCGACCCGGAGGCTCGGAAGAGGCCCACCTA
CGAACAGGTCTTCTTGGCAGGCTCCGTGGCTGGCGCGCTTCAGTGCTCAG
TGTTGACCCCCAGCGAGCTGATCAAATGCCGCCTGCAGACAGACATGACG
CGGCCCCGCTCCCAGGGCCTGCTCTCCTGCATCCGGGAGGTGTATCGGGA
GGGCGGATTGCGAGCTTTCTTCAACGGCTTCGGGCCCACCTTGGTCCGTG
ATTTACCTGCCTTCGGCTGTTACTTCGCCCTGTACGAGGTAGTCAAGGAC
AAgttggagggcaggggagccTCCCCctggctctcttcctccgtggcgGG
CGGGTTCGCCGGTTGCTTCTCCTGGATCATCGTCTACCCTGTTGACGTAA
TTAAGACGGTGATGCAGACGCAGCGGGGAACTGGGCCAAGGCACGGGATG
TTGGAGACAGGGTTGAGGCTATGGAGGACAGAGGGCTTGGGCGTCTTCTT
CCGGGGAGCCTCGATCGCCATGGTGCGCGCATTGCCTGTCAACTGCatcg
tcttccccgtctACGAATGGACGGTGGAGTTTCTGGGAAAGATTGACAGC
CTGCACAGCACGCGGTGGCCGGTCAAACTGCTCCCATCCGCCCCAGATGT
CGGAGAGACTGGCACCGGCGGCCTTAGGAATGTCGACTCCGACGGCGTGG
ATGCCCGCACCGACGGCGAGAAGATCTCTGCCACATGA
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Synonyms
Publications