rna4917, rna4917 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4917
Unique Name	rna4917
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1756
Alignment location	CM002464.1:666132..668652 +

Link to JBrowse

Properties


Property Name	Value
Product	ham group protein
Orig transcript id	gnl\|cribi\|Naga_100168g10.5630.mrna
Orig protein id	gnl\|cribi\|Naga_100168g10.5630
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:666132..668652 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100168g10	gene4748	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4917	rna4917-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25768.1	cds4905	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:666132..668652+
coding sequence from alignment at CM002464.1:666132..668652+

mRNA sequence

>rna4917 ID=rna4917|Name=rna4917|organism=Nannochloropsis gaditana|type=mRNA|length=1756bp
TATTCGCTCTTACCCTTCCTCCATCTCGCTACTCGTTCCCTTCCACGCAC
AGAAGGCATTACAAAATGATGTTGCGCCAGGGGCTCCGGCATGCGGCTTT
TTCATCTATCTCTTTCAATAATATCACAAATGCCGCCACGAAAAAATGCA
CAGCGACAGGCCTTATAACCCGGCTTTTCTCGAGTCAAGGAGCAAATTTG
CAGAAAGCCTTCCAAAAATCGGCCAAGAAGAACAACATTCCGGGGACTTC
CCACCTCAGTGCCGGTGGTTTGCTGTCCGTTGATCATGCTAGCCTGGACG
ACCTTGCTTCTTCGCCAAGCGTTACCACGGCAGCCGAAGATAAGCCGGAA
ACGAGTTCGCCTTCTCCCTCCTCAGCCTCCTCACCTTCCTCTCTCTCCTT
TACCCCGACGCCGGGAGCGAGCACCCCGGAAACTCCCTACATCGCGGGCT
TGAGCCAAGCGCCCGTAATTGCGTCATCTACGCGCCTGGCAAATGCATCC
ATGTCCCAGGCACACATGCAGACACATATTTGCACGGAATTCGCCCCAAA
GATCTCTGTGATCGGCGTGGGAGGCGCAGGCGGGAACGCGGTCAACAACA
TGATCATGCGTGGACTGTCAGGCGTGGAGTTCCTTGTCTGCAACACGGAT
GCTCAGCACCTGGCGACTACTCTCACCGACAATCGTCTGCAAATCGGTCG
GGATATAACGCAGGGCCTGGGCTGCGGGGCGAATCCTGACGTGGGCAAGG
TGGCGGGGGAGGAGTCGAAGGCGGAGCTCCTGGAGCGGATAGGAGACTCT
CACATGGTGTTTATTACTGCCGGCATGGGCGGAGGGACTGGCACGGGCGC
TGCGCCCATCATCGCGAAGACCTGTCACGAGGCTGGCATCCTCACTGTGG
CTGTGGTCACTCGGCCCTTCCGCTTCGAGGGCTCGCACCGCATGCGCCTG
GCCGAGGAGGGGTTGCGCCGCCTCCAGGATTCTGTGGACACTCTTCTCAT
CATCCCCAACCAAAACCTGTTCAAGATGGTGGACCCATCCACGACTTTGC
TCGACGCCTTCCGCCTGGCCGACGACGTCCTGCTCGCGGGCGTGAAGAGC
GTGACGGACCTCATGACCATGCCGGGGCTGATCAACCTCGACTTCGCCGA
CGTACAGTCCGTCATGTCAGGGATGGGGAACGCGATCATGGGTACTGGCC
AGGCCTCAGGGGAGGACCGGGCCCTCCGCGCGGCCGAGGACGCCCTGCAG
AACCCTCTTCTCGGGCAGGTGTCGATCAAATCAGCGAAAGGGATGTTGGT
GAACATTACCGGTGGCCCGGACATGACGCTTTTCGAGGTGGATAAGGCAG
CACAACGCGTGACAGAAGAGGTGGAAGATGAGCATGCGAACATCATCTTT
GGTTCGGCGTACGAGGCGAGTCTGGCGGGTACGAAAGAGGATGGTGCGGG
AGGTTCGATTCGGGTCTCCATTGTGGCCACTGGTATCGAGGAGACCGAGG
CCATGAAGACCAACATTCCCACAAAAAATAAGTGACACACCGGACCGGTG
GGCGCTATAAGTGATGAAAAACTTTGAATGAAGCGCATGCATGTTTATTG
TGACTGTAAACAAATTGTTGGAGGAGCGTGCTCCACTGTTCGAGGCGGTG
GCTTTTAGGTAACGTCCGAAAAATAATCAATATACGTTGTCGCGGGACCA
TTTTATTTGCGGATACTAGGCATGCCAACAAAGAAGAAAAATCCACAATG
TCTGAA

protein sequence of rna4917

>rna4917-protein ID=rna4917-protein|Name=rna4917|organism=Nannochloropsis gaditana|type=polypeptide|length=516bp
MGTNRAWPRGKILDLAKDLPPLVNGSHVYVLWRDGKQVNLAEVIERRPSR
ILVHDSNTRKRGSNGLKRGRSKVESGVEMKVESEDGIKKEELGDDSKHAS
DFDYYVHYCGYDRRLDEWVAVDRIDLVSGVQPTPQTNGHHTHGLGHHHHH
HATGLVPSASAAGQPEGTRNKGSSASSRKRKPEEGAGESAGTGVAEEQVG
EGGLWPGPGRGRGRVSKAEMSQAAVEQEHEEITKVKNVQFIEMGRYEIET
WYYSPFPAEYCDTERLYVCEFCLKYMKRRKTQQRHRAKCDLRHPPGDEIY
REGDLSVFEVDGKLNKIYCQNLCLLAKLFLDHKTLYYDVDPFLFYVLCES
DEKGYHVVGYFSKEKNSCENYNLACILTFPPYQRAGYGKFLISLSYELTK
LEHKVGSPEKPLSDLGKLSYRSYWLMVLLSILIEVPSTTIKDLSQRSGIK
VEDIISTLQCLSMIKYFKGQHVIIVNRQEMKAHLEGMKRMRLAKPECLSW
QGPGGAGLGAKQQKKV

mRNA from alignment at CM002464.1:666132..668652+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4917 ID=rna4917|Name=rna4917|organism=Nannochloropsis gaditana|type=mRNA|length=2521bp|location=Sequence derived from alignment at CM002464.1:666132..668652+ (Nannochloropsis gaditana)
ACTGAGAATGCTCCACAGCGTTATTAaagctttccttttttgcTTTATCA
CCGACACGCTTTCTCACATGATACATTCAGagcctgggcgaggaggaaaa
tagtGAGTTAGAACCGTCGCACCTTTCTGACCTCATCGAGAAGAAGAACT
ACCTTCTCAAGGCTTCCTCGGAGTGGTCGTCGCTGCCGGTTTGACGAAAG
TAGACCCAGCCACGACATTATGGGCACTAATAGGGCATGGCCTCGAGGTG
AGTAGCTTTATTTTGCCTATGAGCTATCTTGAAGGGATTTGGAGAGAAGC
CGGGActggtgtggaggaggaggcagatgaGATACTGCCGAAGAGGCCTG
CTCATACGACCTTCTAAACAGGTAAAATTCTCGACCTGGCCAAAGACCTA
CCTCCTCTCGTCAACGGGTCTCATGTATACGTCTTGTGGCGAGATGGAAA
GCAAGTGAACCTGGCTGAGGTCATCGAACGACGGCCTTCGCGGATTCTAG
TGCACGATAGCAATACCAGGAAACGCGGTTCGAATGGATTAAAGCGGGGC
CGAAGCAAGGTGGAAAGTGGCGTGGAGATGAAAGTGGAATCGGAGGACGG
aataaaaaaggaggaacTGGGGGATGACAGTAAGCACGCGTCGGATTTCG
ATTACTACGTGCACTACTGCGGATATGACCGGCGCTTGGACGAGTGGGTG
GCGGTAGACCGCATCGACCTCGTGAGTGGCGTGCAGCCAACCCCCCAGAC
GAACGGTCACCACACCCACGGCTTGGGtcaccaccatcatcaccacGCCA
CTGGTCTTGTTCCTTCGGCGTCGGCAGCGGGCCAGccggaggggacgagg
aacaAAGGGAGCTCGGCCTCTAGCCGGAAGCggaagccggaggagggtgc
cggAGAAAGTGCGGGTacgggcgtggcggaggaacaagtaggggagggag
ggttgtgGCCAGGTCCAGGAAGGGGTCGCGGGCGCGTGAGCAAAGCCGAG
ATGAGTCAGGCGGCGGTGGAACAGGAGCACGAGGAGATCACCAAGGTGAA
GAACGTGCAGTTCATCGAGATGGGCCGGTACGAGATCGAGACCTGGTACt
actctcccttccccgctgaGTACTGCGACACGGAGAGATTGTATGTGTGC
GAGTTCTGCCTCAAGTACATGAAGAGGCGCAAGACTCAGCAGCGCCACCG
GGCCAAGTGCGACTTGCGCCACCCTCCCGGCGACGAGATCTACCGAGAGG
GGGACCTGAGCGTCTTCGAGGTGGACGGAAAGCTCAACAAGATCTATTGC
CAGAacctctgcctccttgccAAGCTCTTCCTGGACCATAAGACACTCTA
CTACGACGtggaccccttcctcttctacGTGCTGTGTGAGTCGGATGAGA
AGGGCTATCACGTCGTTGGCTACTTCTCCAAGGAGAAAAATTCCTGTGAG
AATTACAACTTGGCCTGTATTTTGACTTTTCCTCCGTATCAACGCGCTGG
CTATGGCAAGTTTCTCATTTCCCTGTCGTACGAGCTCACCAAGCTGGAGC
ACAAGGTGGGCTCTCCTGAAAAGCCACTGTCAGATCTCGGGAAGCTCTCG
TACCGCTCTTACTGGTTGATGGTGCTTTTGAGTATTCTGATAGAAGTGCC
GAGTACGACCATCAAGGACTTGAGCCAGCGCTCGGGCATCAAGGTGGAAG
ATATCATTTCCACGCTGCAGTGTTTGAGTATGATAAAGTACTTCAAGGGC
CAGCATGTGATCATTGTAAATAGGCAAGAGATGAAGGCACATCTGGAGGG
CATGAAAAGAATGCGTTTGGCGAAACCAGAATGTCTCTCTTGGCAAGGTC
CCGGTGGTGCTGGTTTAGGAGCTAAGCAGCAGAAGAAGGTTTGAGGGGTA
GGCTGGATAGAGGAAATGAGAGGCGTCGAGTCTCAGGACACAGTGCTTGA
GGTCGTGGGAAAGGTGGGTATAGCATCCGAATActggaagatgaagaaag
caGGGTGGCCAGTGGGTAttatttatttttttttgcttCCTGTTGGCACA
TCAATGAGGTGTCATCATCCATATCGCTGTGGTATGTTGTACAGGCAACT
TGATTCGTCCTGTTTCACGCACAGGGACATTTCCAGCGTCACATCACCCA
TGCAAGAATACGATTACATCCTTGCGTGTGATCTCCGCGTAAGTTTCTAG
ATCATGTTGATAACCATAAATCTGGAGTTAAAAAGCAGATTACACTAGTG
ATGCCTGGTTACTTCTTTCCGGGTAGCTCAGTAGTACTGCGCAGCAAAAA
TCTTATGAACCACTCCTATGCGTTTCTACGGGGCACATAGAAGTACATGT
GCAATTAAAGCGTTTTCATCTTGGAGACGTATAAGGAAATTCAAAAGAAT
CAAGACTGATGACAGAAGAAGAGATTTTTCCTGGTTTTCTGGTCTCTCGA
GTGCCCTCCCGCAGAGATCGCGGTGGTGTCTTCGAGGACGAAAATTTTAT
AGCGGGACAGTGCTTGAAACG

Coding sequence (CDS) from alignment at CM002464.1:666132..668652+

>rna4917 ID=rna4917|Name=rna4917|organism=Nannochloropsis gaditana|type=CDS|length=3102bp|location=Sequence derived from alignment at CM002464.1:666132..668652+ (Nannochloropsis gaditana)
ATGGGCACTAATAGGGCATGGCCTCGAGGTAAAATTCTCGACCTGGCCAA
AGACCTACCTCCTCTCGTCAACGGGTCTCATGTATACGTCTTGTGGCGAG
ATGGAAAGCAAGTGAACCTGGCTGAGGTCATCGAACGACGGCCTTCGCGG
ATTCTAGTGCACGATAGCAATACCAGGAAACGCGGTTCGAATGGATTAAA
GCGGGGCCGAAGCAAGGTGGAAAGTGGCGTGGAGATGAAAGTGGAATCGG
AGGACGGaataaaaaaggaggaacTGGGGGATGACAGTAAGCACGCGTCG
GATTTCGATTACTACGTGCACTACTGCGGATATGACCGGCGCTTGGACGA
GTGGGTGGCGGTAGACCGCATCGACCTCGTGAGTGGCGTGCAGCCAACCC
CCCAGACGAACGGTCACCACACCCACGGCTTGGGtcaccaccatcatcac
cacGCCACTGGTCTTGTTCCTTCGGCGTCGGCAGCGGGCCAGccggaggg
gacgaggaacaAAGGGAGCTCGGCCTCTAGCCGGAAGCggaagccggagg
agggtgccggAGAAAGTGCGGGTacgggcgtggcggaggaacaagtaggg
gagggagggttgtgGCCAGGTCCAGGAAGGGGTCGCGGGCGCGTGAGCAA
AGCCGAGATGAGTCAGGCGGCGGTGGAACAGGAGCACGAGGAGATCACCA
AGGTGAAGAACGTGCAGTTCATCGAGATGGGCCGGTACGAGATCGAGACC
TGGTACtactctcccttccccgctgaGTACTGCGACACGGAGAGATTGTA
TGTGTGCGAGTTCTGCCTCAAGTACATGAAGAGGCGCAAGACTCAGCAGC
GCCACCGGGCCAAGTGCGACTTGCGCCACCCTCCCGGCGACGAGATCTAC
CGAGAGGGGGACCTGAGCGTCTTCGAGGTGGACGGAAAGCTCAACAAGAT
CTATTGCCAGAacctctgcctccttgccAAGCTCTTCCTGGACCATAAGA
CACTCTACTACGACGtggaccccttcctcttctacGTGCTGTGTGAGTCG
GATGAGAAGGGCTATCACGTCGTTGGCTACTTCTCCAAGGAGAAAAATTC
CTGTGAGAATTACAACTTGGCCTGTATTTTGACTTTTCCTCCGTATCAAC
GCGCTGGCTATGGCAAGTTTCTCATTTCCCTGTCGTACGAGCTCACCAAG
CTGGAGCACAAGGTGGGCTCTCCTGAAAAGCCACTGTCAGATCTCGGGAA
GCTCTCGTACCGCTCTTACTGGTTGATGGTGCTTTTGAGTATTCTGATAG
AAGTGCCGAGTACGACCATCAAGGACTTGAGCCAGCGCTCGGGCATCAAG
GTGGAAGATATCATTTCCACGCTGCAGTGTTTGAGTATGATAAAGTACTT
CAAGGGCCAGCATGTGATCATTGTAAATAGGCAAGAGATGAAGGCACATC
TGGAGGGCATGAAAAGAATGCGTTTGGCGAAACCAGAATGTCTCTCTTGG
CAAGGTCCCGGTGGTGCTGGTTTAGGAGCTAAGCAGCAGAAGAAGGTTTG
AATGGGCACTAATAGGGCATGGCCTCGAGGTAAAATTCTCGACCTGGCCA
AAGACCTACCTCCTCTCGTCAACGGGTCTCATGTATACGTCTTGTGGCGA
GATGGAAAGCAAGTGAACCTGGCTGAGGTCATCGAACGACGGCCTTCGCG
GATTCTAGTGCACGATAGCAATACCAGGAAACGCGGTTCGAATGGATTAA
AGCGGGGCCGAAGCAAGGTGGAAAGTGGCGTGGAGATGAAAGTGGAATCG
GAGGACGGaataaaaaaggaggaacTGGGGGATGACAGTAAGCACGCGTC
GGATTTCGATTACTACGTGCACTACTGCGGATATGACCGGCGCTTGGACG
AGTGGGTGGCGGTAGACCGCATCGACCTCGTGAGTGGCGTGCAGCCAACC
CCCCAGACGAACGGTCACCACACCCACGGCTTGGGtcaccaccatcatca
ccacGCCACTGGTCTTGTTCCTTCGGCGTCGGCAGCGGGCCAGccggagg
ggacgaggaacaAAGGGAGCTCGGCCTCTAGCCGGAAGCggaagccggag
gagggtgccggAGAAAGTGCGGGTacgggcgtggcggaggaacaagtagg
ggagggagggttgtgGCCAGGTCCAGGAAGGGGTCGCGGGCGCGTGAGCA
AAGCCGAGATGAGTCAGGCGGCGGTGGAACAGGAGCACGAGGAGATCACC
AAGGTGAAGAACGTGCAGTTCATCGAGATGGGCCGGTACGAGATCGAGAC
CTGGTACtactctcccttccccgctgaGTACTGCGACACGGAGAGATTGT
ATGTGTGCGAGTTCTGCCTCAAGTACATGAAGAGGCGCAAGACTCAGCAG
CGCCACCGGGCCAAGTGCGACTTGCGCCACCCTCCCGGCGACGAGATCTA
CCGAGAGGGGGACCTGAGCGTCTTCGAGGTGGACGGAAAGCTCAACAAGA
TCTATTGCCAGAacctctgcctccttgccAAGCTCTTCCTGGACCATAAG
ACACTCTACTACGACGtggaccccttcctcttctacGTGCTGTGTGAGTC
GGATGAGAAGGGCTATCACGTCGTTGGCTACTTCTCCAAGGAGAAAAATT
CCTGTGAGAATTACAACTTGGCCTGTATTTTGACTTTTCCTCCGTATCAA
CGCGCTGGCTATGGCAAGTTTCTCATTTCCCTGTCGTACGAGCTCACCAA
GCTGGAGCACAAGGTGGGCTCTCCTGAAAAGCCACTGTCAGATCTCGGGA
AGCTCTCGTACCGCTCTTACTGGTTGATGGTGCTTTTGAGTATTCTGATA
GAAGTGCCGAGTACGACCATCAAGGACTTGAGCCAGCGCTCGGGCATCAA
GGTGGAAGATATCATTTCCACGCTGCAGTGTTTGAGTATGATAAAGTACT
TCAAGGGCCAGCATGTGATCATTGTAAATAGGCAAGAGATGAAGGCACAT
CTGGAGGGCATGAAAAGAATGCGTTTGGCGAAACCAGAATGTCTCTCTTG
GCAAGGTCCCGGTGGTGCTGGTTTAGGAGCTAAGCAGCAGAAGAAGGTTT
GA

Synonyms

Publications