rna4916, rna4916 (mRNA) Nannochloropsis gaditana

Overview
Namerna4916
Unique Namerna4916
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1176
Alignment locationCM002464.1:664238..665993 +

Link to JBrowse

Properties
Property NameValue
Productcell division protein
Orig transcript idgnl|cribi|Naga_100168g11.5628.mrna
Orig protein idgnl|cribi|Naga_100168g11.5628
GeneFTSZ
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:664238..665993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
FTSZgene4747Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4916rna4916-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25766.1cds4904Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4916 ID=rna4916|Name=rna4916|organism=Nannochloropsis gaditana|type=mRNA|length=1176bp
ATGACATCCACCAAAGCGGCCAAGCCTCCACCAGAACCCTTCATCCTTAG
AGGTCACGAGGCTGGCGTACAAGCCCTCGCTTTTCTGTGCGAAAACCACG
GTACCACCTCTGAGCGGGGGAGCGATGATTTCTCCTTGTTGGCGTCAGGC
GACGCTGATGGCCACGTGAAGTTGTGGGACATGGGTGCATGTCGGCCTTG
TATGAGCTGGATACCGGCCCGCGCCGCTGCACAAGTAACTTCGGCGAGCC
CAAGCCCTGCGACAATGAAGGGTGTGCTAAGCTTGCATGCATTCAATCAG
GGTCGTAGCCTCTTGACGCAAGTTCGCGGAGGCACTGTTTCCTTGTGGGA
CCTTGGCAAATGTGGAGGGACACCCCAGTCTCTACGCTCTTGGGCCACGG
GGTCCTTCCATTTTTGCAAAGTGTCGGTGGGTGAAGTTGGTGGTGCGGAC
CCGACGCAGCTACTTTTGGCGCCCACGGTAGAGTCGGAGCAATTTCAGCT
GTGGGATATGCGGGAGGGCTCGCGCCCCGTGATCTCTTTTACGCCACCAG
GACCGCAAAATCGAGGCTTGTGCATGTGCCTTAAGTTGTTGCTTTCAGGA
ACGAGAGGCGCGGAAGACAGCAATGCTGGGGTGGGCCACGCCCTGGCGGT
CTTTGAGGATGGCTCGTTACACGGATGGGACTTGAGGATGCTCGCCACAA
ATGACAGAGACTCTTTCAAGTATGGAACTGGTGACGTTGCAGCCTTTTCT
GTAAAGCTGGCACAGAAAGAGACCCCTCTGTGTCTGGACGTAGCACCGTC
GAGGCGCCGAGGTATTCTGGGAGCCGCAGGCGCCGACCTTGTAACCTTTG
CCCTAGACCTTGCCCTGCATCATTGCCAGGTGAAGCAATGCATTGCGCTA
AAGCATCCGGGTGTGGGCGACGTGAAAATCAGAGAGGATGAGGGACTCTG
GGCCGTGGGTGGGTGGGACCACCGTGTGCGCATTTTCCGCTGGCAAGATG
GGGCTCCGTTGGCCGTTTTGAGGGGTCATGGCGCAACCGTCAATGCGCTT
ACGTTCTCCCCCGGTCTCAAAACGCTGGTATCAGGGGGGAAAGATGCAAG
GATCGCTTTGTGGGAGAACGTGTTCCCTCCCTTGCCCCCTCCGCGAGACA
CAAGTCGGAAGAAGGACGTCTCGTGA
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protein sequence of rna4916

>rna4916-protein ID=rna4916-protein|Name=rna4916|organism=Nannochloropsis gaditana|type=polypeptide|length=489bp
MMLRQGLRHAAFSSISFNNITNAATKKCTATGLITRLFSSQGANLQKAFQ
KSAKKNNIPGTSHLSAGGLLSVDHASLDDLASSPSVTTAAEDKPETSSPS
PSSASSPSSLSFTPTPGASTPETPYIAGLSQAPVIASSTRLANASMSQAH
MQTHICTEFAPKISVIGVGGAGGNAVNNMIMRGLSGVEFLVCNTDAQHLA
TTLTDNRLQIGRDITQGLGCGANPDVGKVAGEESKAELLERIGDSHMVFI
TAGMGGGTGTGAAPIIAKTCHEAGILTVAVVTRPFRFEGSHRMRLAEEGL
RRLQDSVDTLLIIPNQNLFKMVDPSTTLLDAFRLADDVLLAGVKSVTDLM
TMPGLINLDFADVQSVMSGMGNAIMGTGQASGEDRALRAAEDALQNPLLG
QVSIKSAKGMLVNITGGPDMTLFEVDKAAQRVTEEVEDEHANIIFGSAYE
ASLAGTKEDGAGGSIRVSIVATGIEETEAMKTNIPTKNK
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mRNA from alignment at CM002464.1:664238..665993+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4916 ID=rna4916|Name=rna4916|organism=Nannochloropsis gaditana|type=mRNA|length=1756bp|location=Sequence derived from alignment at CM002464.1:664238..665993+ (Nannochloropsis gaditana)
TATTCGCTCttacccttcctccatctcgctactcgttcccttccacgCAC
AGAAGGCATTACAAAATGATGTTGCGCCAGGGGCTCCGGCATGCGGCTTT
TTCATCTATCTCTTTCAATAATATCACAAATGCCGCCACGAAAAAATGCA
CAGCGACAGGCCTTATAACCCGGCTTTTCTCGAGTCAAGGAGCAAATTTG
CAGAAAGCCTTCCAAAAATCGGCCAAGAAGAACAACATTCCGGGGACTTC
CCACCTCAGTGCCGGTGGTTTGCTGTCCGTTGATCATGCTAGCCTGGACG
ACCTTGCTTCTTCGCCAAGCGTTACCACGGCAGCCGAAGATAAGCCGGAA
ACGagttcgccttctccctcctcagcctcctcaccttcctctctctcctt
tacCCCGACGCCGGGAGCGAGCACCCCGGAAACTCCCTACATCGCGGGCT
TGAGCCAAGCGCCCGTAATTGCGTCATCTACGCGCCTGGCAAATGCATCC
ATGTCCCAGGCACACATGCAGACACATATTTGCACGGAATTCGCCCCAAA
GATCTCTGTGATCGGCGTGGGAGGCGCAGGCGGGAACGCGGTCAACAACA
TGATCATGCGTGGACTGTCAGGCGTGGAGTTCCTTGTCTGCAACACGGAT
GCTCAGCACCTGGCGACTACTCTCACCGACAATCGTCTGCAAATCGGTCG
GGATATAACGCAGGGCCTGGGCTGCGGGGCGAATCCTGACGTGGGcaagg
tggcgggggaggagtcgAAGGCGGAGCTCCTGGAGCGGATAGGAGACTCT
CACATGGTGTTTATTACTGCCGgcatgggcggagggactggcACGGGCGC
TGCGCCCATCATCGCGAAGACCTGTCACGAGGCTGGCATCCTCACTGTGG
CTGTGGTCACTCGGCCCTTCCGCTTCGAGGGCTCGCACCGCATGCgcctg
gccgaggaggggttgcgccgcctccaggaTTCTGTGGACACTCTTCTCAT
CATCCCCAACCAAAACCTGTTCAAGATGGTGGACCCATCCACGACTTTGC
TCGACGCCTTCCGCCTGGCCGACGACGTCCTGCTCGCGGGCGTGAAGAGC
GTGACGGACCTCATGACCATGCCGGGGCTGATCAACCTCGACTTCGCCGA
CGTACAGTCCGTCATGTCAGGGATGGGGAACGCGATCATGGGTACTGGCC
AGGCCTCAGGGGAGGACCGGGCCCTCCGCGCGGCCGAGGACGCCCTGCAG
AACCCTCTTCTCGGGCAGGTGTCGATCAAATCAGCGAAAGGGATGTTGGT
GAACATTACCGGTGGCCCGGACATGACGCTTTTCGAGGTGGATAAGGCAG
CACAACGCGTGacagaagaggtggaagatgaGCATGCGAACATCATCTTT
GGTTCGGCGTACGAGGCGAGTCTGGCGGGTACGAAAGAGGATGGTGCGGG
AGGTTCGATTCGGGTCTCCATTGTGGCCACTGGTATCGAGGAGACCGAGG
CCATGAAGACCAACATTCCCACAAAAAATAAGTGACACACCGGACCGGTG
GGCGCTATAAGTGATGAAAAACTTTGAATGAAGCGCATGCATGTTTATTG
TGACTGTAAACAAATTGTTGGAGGAGCGTGCTCCACTGTTCGAGGCGGTG
GCTTTTAGGTAACGTCCGAAAAATAATCAATATACGTTGTCGCGGGACCA
TTTTATTTGCGGATACTAGGCATGCCaacaaagaagaaaaatccACAATG
TCTGAA
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Coding sequence (CDS) from alignment at CM002464.1:664238..665993+

>rna4916 ID=rna4916|Name=rna4916|organism=Nannochloropsis gaditana|type=CDS|length=1470bp|location=Sequence derived from alignment at CM002464.1:664238..665993+ (Nannochloropsis gaditana)
ATGATGTTGCGCCAGGGGCTCCGGCATGCGGCTTTTTCATCTATCTCTTT
CAATAATATCACAAATGCCGCCACGAAAAAATGCACAGCGACAGGCCTTA
TAACCCGGCTTTTCTCGAGTCAAGGAGCAAATTTGCAGAAAGCCTTCCAA
AAATCGGCCAAGAAGAACAACATTCCGGGGACTTCCCACCTCAGTGCCGG
TGGTTTGCTGTCCGTTGATCATGCTAGCCTGGACGACCTTGCTTCTTCGC
CAAGCGTTACCACGGCAGCCGAAGATAAGCCGGAAACGagttcgccttct
ccctcctcagcctcctcaccttcctctctctcctttacCCCGACGCCGGG
AGCGAGCACCCCGGAAACTCCCTACATCGCGGGCTTGAGCCAAGCGCCCG
TAATTGCGTCATCTACGCGCCTGGCAAATGCATCCATGTCCCAGGCACAC
ATGCAGACACATATTTGCACGGAATTCGCCCCAAAGATCTCTGTGATCGG
CGTGGGAGGCGCAGGCGGGAACGCGGTCAACAACATGATCATGCGTGGAC
TGTCAGGCGTGGAGTTCCTTGTCTGCAACACGGATGCTCAGCACCTGGCG
ACTACTCTCACCGACAATCGTCTGCAAATCGGTCGGGATATAACGCAGGG
CCTGGGCTGCGGGGCGAATCCTGACGTGGGcaaggtggcgggggaggagt
cgAAGGCGGAGCTCCTGGAGCGGATAGGAGACTCTCACATGGTGTTTATT
ACTGCCGgcatgggcggagggactggcACGGGCGCTGCGCCCATCATCGC
GAAGACCTGTCACGAGGCTGGCATCCTCACTGTGGCTGTGGTCACTCGGC
CCTTCCGCTTCGAGGGCTCGCACCGCATGCgcctggccgaggaggggttg
cgccgcctccaggaTTCTGTGGACACTCTTCTCATCATCCCCAACCAAAA
CCTGTTCAAGATGGTGGACCCATCCACGACTTTGCTCGACGCCTTCCGCC
TGGCCGACGACGTCCTGCTCGCGGGCGTGAAGAGCGTGACGGACCTCATG
ACCATGCCGGGGCTGATCAACCTCGACTTCGCCGACGTACAGTCCGTCAT
GTCAGGGATGGGGAACGCGATCATGGGTACTGGCCAGGCCTCAGGGGAGG
ACCGGGCCCTCCGCGCGGCCGAGGACGCCCTGCAGAACCCTCTTCTCGGG
CAGGTGTCGATCAAATCAGCGAAAGGGATGTTGGTGAACATTACCGGTGG
CCCGGACATGACGCTTTTCGAGGTGGATAAGGCAGCACAACGCGTGacag
aagaggtggaagatgaGCATGCGAACATCATCTTTGGTTCGGCGTACGAG
GCGAGTCTGGCGGGTACGAAAGAGGATGGTGCGGGAGGTTCGATTCGGGT
CTCCATTGTGGCCACTGGTATCGAGGAGACCGAGGCCATGAAGACCAACA
TTCCCACAAAAAATAAGTGA
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Synonyms
Publications