|
|
Properties
| Property Name | Value |
|---|
| Product | light-harvesting protein |
| Orig transcript id | gnl|cribi|Naga_100168g13.5621.mrna |
| Orig protein id | gnl|cribi|Naga_100168g13.5621 |
| Gene | LHCP28 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:660438..662296 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4914 ID=rna4914|Name=rna4914|organism=Nannochloropsis gaditana|type=mRNA|length=1339bp
GGTCTGCGTGGAAATAATGCCCCACAAGGAAGGATAAATCTTCTCCCTCG
CGGCGTAGCGCCCTCCTCAAGAGCTGCCCAAGTTTAAATCTGCGCAATCT
TTGGGCCCCAATATAGCTCTGAGCCTCACGAATGGCTTCATGGCTGCCTC
CTGGTTGACGTGCGGAGCCAGAAAGGATTTCCTCTTCAACGTGAGCGTTA
AATGCTTGTCCCATGTCCGACGCGGGGGCGACCCCGCGTGGACGTGCGCT
TGCAGAACGTTTACTCCCTCCTCCTAGACAATGAAGTATGTGGAATAGAA
CACATGTACTCTCGTGTTTGGGGATGTGCACGATTATGAGCGAGGAGAAG
TTTTTGGTGTCAAAATCACACTCTCTTCCACCTATTAATCCTACACGAGC
AGATCCACTCCCCCTTCTTCAAAATGAAGTCCGCGATGGTACTTGTCGGC
AGCTTGGCTGTGGCCTCTGCATTCGTTCCTGCGGCCCCTAAGATGTCTCG
CACTCGTGGGATGACACGCATGGCCGTGAACGACATCCTGGGCTCAGACG
TGGAGACTGGCGGCGTGTGGGACCCCCTCAATTTTTCCAAAGACGAGGGC
AGCCTGTACCGATATCGCGCCGTGGAGCTCAAGCACGGCCGATTGGCGAT
GCTTGCCGTGTTAGGCCTGTGGGTCTCTGAGTTCTATCACCCCCTCTACG
ACGGAAAGATCTCACCGGGCATCAAGGCCATCGGGGAACTGCCGGGCCCG
GCCTGGCTGCAGATCCTTGCCACTATTGGTGTGATTGAACTGACCGTGGG
AAAGCAGGACACGGAGAATAAGGCACCGGGCGACCTCGGCTTCGGGTACA
ACTTCAACCCCTTCAAGAACGACCCCGAGAAGTTCGCCGAGCTGCAACTC
AAAGAACTTAAAAACGGGCGCCTGGCCATGCTTGGCGCGGCAGGAATTCT
GCTGCAGGAGAGTATCACCGGCCAGACTTGCTTCGAGCAGATCGCCGCGC
AGCATCTCAGCCCGTTTGGTGACGGACAGGGCTTTTTCTGAGCGCACCTT
CCAAATCGCATTTCGTGGCCACTGATAGTAGTCAACCTTTTTTTATGCAT
TCGTCGTTGAGAGACCTCTAAAAGGTTCATGGGATGGTATGAATCCATAA
GAGGATCTAAACAAAAAATGAGTAAGGAAGTGCGGCATAAGAGGATGAAC
TCATCGGCCTACCTGCCTACTGACTTGTGGTAGGGCGCGTACGAAGAGAT
AGTGCATGTGTGTAACGCGGGGTGGAATGCGCCGAGAAGGCTCGCGCCAC
AAAGCTAGAAAGAAATAATGTCAGAGTGCCCACAAGGTG back to topprotein sequence of rna4914 >rna4914-protein ID=rna4914-protein|Name=rna4914|organism=Nannochloropsis gaditana|type=polypeptide|length=300bp
MKTAVLFLSGLVGAQAFLTPNARVPAATKMEAIKAGKGAKAGKAATANNY
LKEVEPGSGPLGKWYVRDDPTLSTALPWVTRPEIGDGSLVGDFGFDPFGL
SKIFDVNWLRNAELKHGRLAMLATLGMVTPELVQAPAGFEGFKFAPEFSE
LNAIKALSAVPTLGLAQIILAISFVEVATFSKVYNERFTFEDNLTPLERK
KVVQGRFSDLSGAAKTQAKAGVNPFGNAVDVGFQDPEKFVPGDLGFDPVG
FTDNGINPDYALAEIKHARLAMLGAAGMLIQEFLQPKGILSQTVEWAQSQ back to topmRNA from alignment at CM002464.1:660438..662296+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4914 ID=rna4914|Name=rna4914|organism=Nannochloropsis gaditana|type=mRNA|length=1859bp|location=Sequence derived from alignment at CM002464.1:660438..662296+ (Nannochloropsis gaditana)
ATCCTTCCTTGTGGGGCATTATTTCCACGCAGACCAGTCGACCGCAGGAA
CGGTATCCTCCTCAATTCAACTCCCATCGCTCGCTTCCCCGACTCCTCTG
TCCGGCCCCTTTCTTGCCTGATGAACTCATTCCAGGACCTAGACCATGCG
TTTCCCTAGGACCTATTGAGTCAACTTGTTGGGACCGAATACGTCCGCTG
ATAGCTCTCATGTGCGCTCTTGCTTTATCGAAGCCTAGGGCCAGCAGGCG
CTAATGAGAAGCACAGTACggcgaggcagagaaggattTTGGCTCCAGAA
GACATGGATTCAGACGATGAATTCTTTTGACTTGTCAATACATGGCACCT
CATACACTTATTGTAGTTGAGTGCTTTCCAAAGATTCAAAGAGTTGTAAC
GCACATTCACGCTGCCACTCTGAGAAAGTTTAAAATCTATCTCGACCTCG
CGCTGTAGTGAGAGACCATGTCTTTGAAGACCAAAGCTGGTGCTATTATT
GTTCGTAAATCCGCACTCCCTCTAATCTACACCTTATAAATACATTCCGT
TCCAGGCCCCCTATTTGCGTCCTATCAACCGCGATGAAGACCGcagtcct
cttcctgtcGGGTCTGGTCGGCGCCCAGGCTTTCCTCACCCCCAACGCCC
GGGTGCCAGCCGCAACCAAGATGGAGGCCatcaaggcggggaagggagcc
aaGGCCGGTAAGGCCGCTACTGCCAACAACTAcctcaaggaggtggagcc
tGGCTCGGGCCCACTCGGAAAGTGGTACGTCCGGGACGACCCGACCCTCT
CGACCGCCCTTCCCTGGGTCACACGGCCCGAGATCGGGGACGGCTCTCTG
GTGGGGGACTTCGGTTTCGATCCTTTTGGCCTTTCCAAGATCTTCGATGT
GAATTGGTTGCGCAATGCGGAGCTCAAGCACGGACGATTGGCCATGTTGG
CCACGCTGGGTATGGTTACGCCCGAGCTGGTGCAGGCCCCTGCTGGATTC
GAGGGCTTCAAGTTTGCGCCCGAGTTCTCGGAGCTGAACGCCATTAAAGC
ATTGAGCGCCGTGCCTACCTTGGGTTTGGCGCAGATCATTCTGGCCATAT
CTTtcgtggaggtggcgaccTTTAGCAAGGTGTACAATGAGCGCTTCACG
TTCGAAGACAACCTGACCCCCTTGGAGCGCAAGAAAGTCGTCCAGGGCCG
CTTCTCTGACCTTTCTGGCGCCGCCAAGACACAAGCCAAAGCGGGCGTGA
ACCCGTTTGGGAACGCCGTGGACGTGGGTTTTCAGGATCCCGAGAAGTTC
GTGCCCGGGGACCTGGGCTTCGACCCCGTCGGCTTCACAGACAACGGCAT
CAACCCGGACTACGCCCTGGCCGAGATCAAGCACGCCCGCCTTGCCATGC
TTGGCGCAGCCGGCATGCTTATCCAGGAATTCCTCCAACCCAAGGGTATC
CTGAGCCAGACGGTCGAGTGGGCCCAGAGCCAGTAATGCCGTTTCCGTGA
GCGCTCACTTGCTCTGCTGATCTGGTGGCCCCTTGAAATTAGCCTGCGTT
GATTCAGTGGTGCTTGCGTTCTGATTTGATTGGTGGAGAAgacgggaatg
gaggaaaacttaccccctctccccctctgtgAACCCTGTTGCGtacgtgg
aaggggaggagaatcTATAAGCATAGAGGGTTGGATGTAGCGACCGAGAT
CGGGACGACTGGAAAAACAGAAAGGAAAACGAACTCAACGAGTCAGGTGA
AGAGTCGGATAACATTTGTTTCGCCGTGCGTTCATTAATACATATTTGTC
GTGCGGCATGTTCACGAGACGTCCTTCTTCCGACTTGTGTCTCgcggagg
gggcaaggg back to topCoding sequence (CDS) from alignment at CM002464.1:660438..662296+ >rna4914 ID=rna4914|Name=rna4914|organism=Nannochloropsis gaditana|type=CDS|length=903bp|location=Sequence derived from alignment at CM002464.1:660438..662296+ (Nannochloropsis gaditana)
ATGAAGACCGcagtcctcttcctgtcGGGTCTGGTCGGCGCCCAGGCTTT
CCTCACCCCCAACGCCCGGGTGCCAGCCGCAACCAAGATGGAGGCCatca
aggcggggaagggagccaaGGCCGGTAAGGCCGCTACTGCCAACAACTAc
ctcaaggaggtggagcctGGCTCGGGCCCACTCGGAAAGTGGTACGTCCG
GGACGACCCGACCCTCTCGACCGCCCTTCCCTGGGTCACACGGCCCGAGA
TCGGGGACGGCTCTCTGGTGGGGGACTTCGGTTTCGATCCTTTTGGCCTT
TCCAAGATCTTCGATGTGAATTGGTTGCGCAATGCGGAGCTCAAGCACGG
ACGATTGGCCATGTTGGCCACGCTGGGTATGGTTACGCCCGAGCTGGTGC
AGGCCCCTGCTGGATTCGAGGGCTTCAAGTTTGCGCCCGAGTTCTCGGAG
CTGAACGCCATTAAAGCATTGAGCGCCGTGCCTACCTTGGGTTTGGCGCA
GATCATTCTGGCCATATCTTtcgtggaggtggcgaccTTTAGCAAGGTGT
ACAATGAGCGCTTCACGTTCGAAGACAACCTGACCCCCTTGGAGCGCAAG
AAAGTCGTCCAGGGCCGCTTCTCTGACCTTTCTGGCGCCGCCAAGACACA
AGCCAAAGCGGGCGTGAACCCGTTTGGGAACGCCGTGGACGTGGGTTTTC
AGGATCCCGAGAAGTTCGTGCCCGGGGACCTGGGCTTCGACCCCGTCGGC
TTCACAGACAACGGCATCAACCCGGACTACGCCCTGGCCGAGATCAAGCA
CGCCCGCCTTGCCATGCTTGGCGCAGCCGGCATGCTTATCCAGGAATTCC
TCCAACCCAAGGGTATCCTGAGCCAGACGGTCGAGTGGGCCCAGAGCCAG
TAA back to top
|