rna4911, rna4911 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4911
Unique Name	rna4911
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2226
Alignment location	CM002464.1:648788..652233 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100176g2.1048.mrna
Orig protein id	gnl\|cribi\|Naga_100176g2.1048
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:648788..652233 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100176g2	gene4742	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4911	rna4911-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25779.1	cds4899	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:648788..652233+
coding sequence from alignment at CM002464.1:648788..652233+

mRNA sequence

>rna4911 ID=rna4911|Name=rna4911|organism=Nannochloropsis gaditana|type=mRNA|length=2226bp
GACATCTTAGATGCGCCGGCGATTGTGTCGTGTGACATGATAGTGGCCAT
AATTTTGAAAGTGGGCGAGAAAACTTTGGCGGAGAGACGATGGCCCGCCT
TGGAGGCCGCTAGCTACCGCCTTTGACTCGCGTGCCCAAGTCCGGCAGAA
CATAATCATCCTATAGAGCTGGTTTAAATTGGTTAGCTCATTTGTTCTTG
ATCTCATGGAGAGACATCGGCGCATTGATTGTGTCCCCTGACGATGTGGG
AATGGTGGGATGGCTCCAGGGCCCAACGCATAACGACGATGACGGCTCTC
AAGACGTTCCACCCATACATGCATTGATCAGGCACCGGAGACAGAAAGCA
TAACATCCGCCGCGATCGATCCAGCACGCCCATGTCCAAGTACGTGACAA
CAGCTGATAGGATGGCGGCTTTCAAACGGATGAAGTCTCGTCCCGAAAAC
CAGGTTTGCTTTGATTGTCCGACGCGCAATCCGACCTGGGCATCCGCGAC
ATACGGTGTATTTATCTGTTACAACTGCTCTGCCACCCACCGGGCTCTGG
GCGTCCACATCACGTTTGTCCGCTCTGTCGACTTGGACGAGTGGACCCCG
CAACAATTGCTGACCATGCGGCTTGGGGGAAACTCGAATGCTGCTCAATT
TTTCCGGAGGCATGGGGTCACTCATGGAGGAAAGGTGGAACAGAAGTACT
CCTCCCGGGCAGCCGAGCTGTACAAGTCGCACCTCAGTAAATTGGTGGCA
GACAAGATAGTTATGGATGCGAATGCCCTGGAACCACCGCCTCCGACAGA
CACTGTGGTAGCCGTTGGCTGTGGATTGGACAACCTGATGCTTTCGTACC
AAGAGCCCGAAGACGTGCCTGTGGGTGGGGCCGGAAGCAGCGACGGGGAC
GGCCTAGCCCCCATCTCTCGGGAGGAGACCACCTTATCTCCACCCACTGC
CTCGGATGCCGCCTCTGAACAGGAAGCCGAGAAATCTTTCGCAGTCGCCG
CGACATGCGCGCCAGTACAGCAACCCCCGGCCCGCGTGGCCGTACAGCAG
GACTCTCGACGCTCGCCCACTGGTACTTACAACACCCTGACTCGGGGAGC
GGGGGAATTGAAGCTCTCCACCGCGACGGGCGGAGGATCGACGATCGTTA
CAGAGGCCGGAGGATGCGCCGACCTTGTCGTGGGAGGCGTCAGCGGTACA
GGAAGCGGAATGTTCAAGACCGGACCGCGCAAGAGCACGGTGAAGGGCTT
GGGCGCGCGAAAACTGGGAGCGCGGAAGATGGGAACTGAGGGGGCCGGCG
CTAGCTCCGGCATGGCCTCTTTCGAAGAGGCTGCCAGGCAAGCTACCGAG
GCCCAGGCAGCTGCAAAGCAGGCGGCGCAGGATCGGGAGCAAGCTGAAAA
GGATCGGAAGGTGCGGGAGTTGAACGCGTTCCTGGGCCACACGCCTCGAT
CGGGCACGACAATGCAGGACTGGGCGGCTCCTCTACCGGCCTCGCCAGTG
GTCCAAGAGTACCGGCTGGCCCTCACCAGAGAGGAAACGGGGCCATCAGT
ATCGACCGGGCCGCTGGCCGCCAAGTTCAGTACGGCCAAGGGCATCGGAT
CCGACCAGCTGTTTGGAAACGACGAAGAAACAGCCGACATGCGCCACGAA
CGACAAACGAAACTGGCAGGACTACACGGTGCGCGCGCGATTTCGAGCGA
CATGTATTTCGGGGATGGGCAGGACACGGACTGCGTGCGAGGCTACAATG
CTGGCGGCCCGGACGTTGATGAGTTGGCGGCACATGCCGCGGAGCGTCTT
AGGAGTGTGGGTCAAAACGTAGCACGCGGCGTCGGACTCCTCAAGGATGC
AAGTAGCAACTTTTTTGAATCATTTCGAGCGTGAACGATCAAGGAATAAT
TTGAGCGCAACGGCGGGACCAGATCAGTCACAGAGTTAGCACTCCAACTT
GACGGACGCTTTGTGATAGCGAGGGTAGCCTCTGTCACCAGTCCACGTCC
GCTCGGAAGCTCTAGGTTGGAGATAAGGCTGCAATCTGCCAGCGCACCTT
CGTAGGTAAAGCTATGGATCCATTGCTCTAGATTCAAGGTCCTTTTTGCT
GGAAATAGGAACTGTGCGTGGAATCTTTTTCTTTAAAATGTGTCTTGTGA
AAGAGTCTAATTTGCTCCTCTCCGGACGAAAGCAGTGAAGGTATCGAAAG
TCATGATGGCGATTATTTGTTTTAAA

protein sequence of rna4911

>rna4911-protein ID=rna4911-protein|Name=rna4911|organism=Nannochloropsis gaditana|type=polypeptide|length=484bp
MIARRLVHLFKRLQRKSDVQDSFRFLLDQLRMAVEKGTLHSERLEQQMEE
SEPGKALLSETGQAKHHAIRVIESWTETSLDPLFAQLNALKDQIQNDSET
RAELRDLRNFLERNLQSGKIDDEDAVVQETKGHVDMMRRRLLAKYNERVC
RLVEELSYIRDTLKENETAEILQHDIQHLARSIVYDSQGQPTISSDLVND
LEVLFGTLLRKVQFIPVPHIAVVTNDFDFACDDIVLNLREVTPKQIQLES
LTNIHNLESEQSESSAIRGVSAAAEGAPEPVGLETFERIYLREIHADLPG
ISWYFNKKGGMIHDHDRGKADIKIYGKGMSVDLDVQPGLPIATEDRPVAH
TLEVKQCKATIHRMSLRLYDARHDWLYTVFHSYIKGQVRRAIESSVGRYL
KAYVTNIDRNATIAAVGHYPATRHIMVSSQQEQKEHQEHYRGHEKEQLGA
TIPLRSARTVRSTSVGEDDVPQIHRLVEEDGFKR

mRNA from alignment at CM002464.1:648788..652233+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4911 ID=rna4911|Name=rna4911|organism=Nannochloropsis gaditana|type=mRNA|length=3446bp|location=Sequence derived from alignment at CM002464.1:648788..652233+ (Nannochloropsis gaditana)
gaaacgcAAGAAGGTATAGCAAGGAAGGGATTAGAAAGGGAGGTGATAAG
CCCGGTGTCACAAAACCAGCTGGACATGATCGCCCGCCGCTTGGTCCATC
TCTTTAAACGACTTCAGAGAAAGTCTGATGTTCAGGACAGTTTCCGCTTC
CTGCTAGATCAATTACGCATGGCTGTTGAAAAAGGGACACTGCACTCGGA
GCGCTTAGAGCAGCAAATGGAGGAATCTGAGCCAGGAAAAGCCCTCCTTT
CGGAGACTGGTCAAGCCAAACACCATGCCATTCGTGTGATTGAAAGCTGG
ACTGAAACATCTCTAGATCCATTGTTTGCCCAATTGAACGCCTTGAAGGA
TCAGATTCAGAATGACAGCGAGACACGAGCAGAATTGCGCGACCTAAGGA
ATTTCCTTGAAAGGAATTTGCAGAGTGGAAAAATAGACGATGAGGATGCT
GTGGTGCAGGAGACCAAGGGGCACGTTGACATGATGCGCAGGAGATTGCT
TGGTAAGCGTGAAGAAGTGGATATGTTTGAAGAAGTGGATATGTTGTTCC
GAATCTGAATCTATTTGTGAGGCCATTCTTGATCCGTGATTGATGCGCTT
TCATACTAGTTGTTCATTTCCTCTCTTGTGATGATGTTTTAGGTACGGTT
GCGTCACGATtcacatttttctttcttatCCGCAGCGAAATATAACGAGC
GGGTTTGTCGTTTGGTGGAGGAACTTTCTTATATCCGGGATACCTTGAAA
GAAAACGAGACGGCGGAGATACTGCAGCACGACATTCAGCACCTAGCCCG
CAGCATAGTCTACGACTCTCAAGGGCAGCCTACTATCAGCAGCGACTTGG
TCAATGACCTCGAGGTCTTGTTCGGTACACTTCTACGCAAGGTGCAATTT
ATTCCTGTGCCTCATATTGCTGTCGTCACCAACGATTTCGATTTTGCATG
CGATGACATTGTCCTTAATTTGCGAGAAGTGACTCCAAAGCAGATTCAGT
TGGAGAGTCTGACGAACATTCACAACCTGGAATCTGAACAAAGCGAGTCC
AGTGCCATCAGAGGGGTTTCAGCTGCTGCTGAGGGAGCACCAGAGCCTGT
AGGACTTGAAACATTTGAGCGGATCTATCTACGGGAAATTCATGCTGACC
TACCAGGCATCTCGTGGTATTTCAACAAAAAAGGGGGTATGATTCATGAT
CATGATCGTGGCAAGGCGGATATCAAGATATATGGCAAAGGCATGAGCGT
AGATCTGGATGTTCAACCAGGCTTGCCCATAGCAACGGAAGATCGCCCGG
TCGCGCACACACTGGAAGTCAAGCAGTGCAAGGCAACCATCCACCGCATG
TCGCTTCGATTATATGATGCCAGACATGATTGGCTCTACACCGTTTTTCA
TTCTTACATCAAAGGACAAGTGCGTCGCGCGATTGAGTCCTCGGTGGGGA
GATACTTAAAGGCATATGTAACAAATATTGACAGGAATGCAACGATCGCC
GCAGTAGGTCACTACCCAGCTACTCGCCACATCATGGTATCCAGCCAACA
GGAACAGAAGGAGCATCAAGAGCACTATCGAGGTCATGAAAAAGAGCAGT
TAGGAGCAACGATACCATTAAGGTCGGCTCGTACCGTTCGCTCTACCAGT
GTGGGTGAGGATGACGTGCCACAAATTCATCGACTTGTTGAAGAGGACGG
ATTCAAAAGGTAAGGCGGTCGCTTGTCCCCCTTCGAGGAGGGTCCTGCAT
AAGAGTAGACGCAAAACTCTGGACAACACATATGCAATTCAATTGCGGGA
AGTGTAAAAATGTAAAACGATTGATGTAGACACTTGGGCTTGTCTTTCGA
CGGATGAGAGCATGATCAGTATCCTCGTTCTACTACGTCATATTTGAAGA
TTTCCATCAAAGTAGAAGACGCGAGCGAGCGTAGTAGGTCTTGTTAAGAT
CATATTTATATCGATTGAATGATCACTTGGTTGAAGCAATCTGGTTTCAC
ACATGATCATTCTAAATCTCAGCAGGCACGAGCAAGACATGAAGCGCAAA
CATTTGGATTTTGTGTTTAGGCGAATACCCGCGTATAATAGCGTCGCAGA
CGTACTGCTTACTGCAAACTTGCTTTTATTTTACTGTAAGTTGCTGTACA
CTGAAAGCCTCCTAGGCGTATGTCACGTTCCACATGTATCAAAGTATACT
ATCCAATTAAATTAAAATCTTATCAGTGTGTGTGCTTATCCGCAGGTGGC
GGCCTTACCATCAAATAAATTTGTCCACGAAATTGTGCATTCACGACTAG
CGCGTCAAAGTAGGCTTGGATGCTATGTGAGGCTCCAGAAATCGCTGCGG
ACAGTGCTATTCTTGATTTGCTTGCTGATGTTGTTGCCGACTTTGCTGTT
GCAACCATGACTGTTGCTGCACCATCATGACGCTCTGCTGAAGCTGCTGT
GGTTGGTTTTGTTGAGACGATTGCTGCCAAATTCGTTGTTGCTGTGGCCG
AGGCAGAACTTGCGGCACAAGCTGCTTTTCAAAAGTCGAGGCCATTTCCA
TTGATGTCAGATCCCTATCAGATGGCGATGAGAACACAAGGGGCTCATTC
GATACAGAAATCATCGATCTCGATTGGCCTTGTAGTGATTCTTGAGAGAC
AGGGTACGACGGACTTTGTACATCGTTCTGCTCTTGTTGGTGGCGTCCCT
GGGGGACCAAATGTTGTTGCTGTAGTGatgactgctgctgctgctgatga
tgatgttgttgttgttgttgacgattttgttgttgttgttgctgctgctg
ttgttgctgctgctgctgttgtttttgctgctgctgctgttgttgttgtt
gttgttgttgttgttgttgtggttgtgGTTGTGGTTGATGTTGGTGTAga
tgatgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttg
ttgtggttgtgGTTGTGGTTGATGTTGGTGTAgatgatgttgttgttgtt
gttgttgttgttgttcttgttgttgttgttgttgttgttgttgttgttgt
tgttgttgttgttgttgtggttgtgGTTGTGGTTGATGTTGGTGTagatg
ttgttgttgttgttgttgacgattttgttgttgttgttgctgctgctgtt
gttgttgctgctgctgctgttgtttttgctgatgttgttgttgttgttgt
tgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttg
ttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgtt
gttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgt
tgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttg
ttgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Coding sequence (CDS) from alignment at CM002464.1:648788..652233+

>rna4911 ID=rna4911|Name=rna4911|organism=Nannochloropsis gaditana|type=CDS|length=2910bp|location=Sequence derived from alignment at CM002464.1:648788..652233+ (Nannochloropsis gaditana)
ATGATCGCCCGCCGCTTGGTCCATCTCTTTAAACGACTTCAGAGAAAGTC
TGATGTTCAGGACAGTTTCCGCTTCCTGCTAGATCAATTACGCATGGCTG
TTGAAAAAGGGACACTGCACTCGGAGCGCTTAGAGCAGCAAATGGAGGAA
TCTGAGCCAGGAAAAGCCCTCCTTTCGGAGACTGGTCAAGCCAAACACCA
TGCCATTCGTGTGATTGAAAGCTGGACTGAAACATCTCTAGATCCATTGT
TTGCCCAATTGAACGCCTTGAAGGATCAGATTCAGAATGACAGCGAGACA
CGAGCAGAATTGCGCGACCTAAGGAATTTCCTTGAAAGGAATTTGCAGAG
TGGAAAAATAGACGATGAGGATGCTGTGGTGCAGGAGACCAAGGGGCACG
TTGACATGATGCGCAGGAGATTGCTTGCGAAATATAACGAGCGGGTTTGT
CGTTTGGTGGAGGAACTTTCTTATATCCGGGATACCTTGAAAGAAAACGA
GACGGCGGAGATACTGCAGCACGACATTCAGCACCTAGCCCGCAGCATAG
TCTACGACTCTCAAGGGCAGCCTACTATCAGCAGCGACTTGGTCAATGAC
CTCGAGGTCTTGTTCGGTACACTTCTACGCAAGGTGCAATTTATTCCTGT
GCCTCATATTGCTGTCGTCACCAACGATTTCGATTTTGCATGCGATGACA
TTGTCCTTAATTTGCGAGAAGTGACTCCAAAGCAGATTCAGTTGGAGAGT
CTGACGAACATTCACAACCTGGAATCTGAACAAAGCGAGTCCAGTGCCAT
CAGAGGGGTTTCAGCTGCTGCTGAGGGAGCACCAGAGCCTGTAGGACTTG
AAACATTTGAGCGGATCTATCTACGGGAAATTCATGCTGACCTACCAGGC
ATCTCGTGGTATTTCAACAAAAAAGGGGGTATGATTCATGATCATGATCG
TGGCAAGGCGGATATCAAGATATATGGCAAAGGCATGAGCGTAGATCTGG
ATGTTCAACCAGGCTTGCCCATAGCAACGGAAGATCGCCCGGTCGCGCAC
ACACTGGAAGTCAAGCAGTGCAAGGCAACCATCCACCGCATGTCGCTTCG
ATTATATGATGCCAGACATGATTGGCTCTACACCGTTTTTCATTCTTACA
TCAAAGGACAAGTGCGTCGCGCGATTGAGTCCTCGGTGGGGAGATACTTA
AAGGCATATGTAACAAATATTGACAGGAATGCAACGATCGCCGCAGTAGG
TCACTACCCAGCTACTCGCCACATCATGGTATCCAGCCAACAGGAACAGA
AGGAGCATCAAGAGCACTATCGAGGTCATGAAAAAGAGCAGTTAGGAGCA
ACGATACCATTAAGGTCGGCTCGTACCGTTCGCTCTACCAGTGTGGGTGA
GGATGACGTGCCACAAATTCATCGACTTGTTGAAGAGGACGGATTCAAAA
GGTAAATGATCGCCCGCCGCTTGGTCCATCTCTTTAAACGACTTCAGAGA
AAGTCTGATGTTCAGGACAGTTTCCGCTTCCTGCTAGATCAATTACGCAT
GGCTGTTGAAAAAGGGACACTGCACTCGGAGCGCTTAGAGCAGCAAATGG
AGGAATCTGAGCCAGGAAAAGCCCTCCTTTCGGAGACTGGTCAAGCCAAA
CACCATGCCATTCGTGTGATTGAAAGCTGGACTGAAACATCTCTAGATCC
ATTGTTTGCCCAATTGAACGCCTTGAAGGATCAGATTCAGAATGACAGCG
AGACACGAGCAGAATTGCGCGACCTAAGGAATTTCCTTGAAAGGAATTTG
CAGAGTGGAAAAATAGACGATGAGGATGCTGTGGTGCAGGAGACCAAGGG
GCACGTTGACATGATGCGCAGGAGATTGCTTGCGAAATATAACGAGCGGG
TTTGTCGTTTGGTGGAGGAACTTTCTTATATCCGGGATACCTTGAAAGAA
AACGAGACGGCGGAGATACTGCAGCACGACATTCAGCACCTAGCCCGCAG
CATAGTCTACGACTCTCAAGGGCAGCCTACTATCAGCAGCGACTTGGTCA
ATGACCTCGAGGTCTTGTTCGGTACACTTCTACGCAAGGTGCAATTTATT
CCTGTGCCTCATATTGCTGTCGTCACCAACGATTTCGATTTTGCATGCGA
TGACATTGTCCTTAATTTGCGAGAAGTGACTCCAAAGCAGATTCAGTTGG
AGAGTCTGACGAACATTCACAACCTGGAATCTGAACAAAGCGAGTCCAGT
GCCATCAGAGGGGTTTCAGCTGCTGCTGAGGGAGCACCAGAGCCTGTAGG
ACTTGAAACATTTGAGCGGATCTATCTACGGGAAATTCATGCTGACCTAC
CAGGCATCTCGTGGTATTTCAACAAAAAAGGGGGTATGATTCATGATCAT
GATCGTGGCAAGGCGGATATCAAGATATATGGCAAAGGCATGAGCGTAGA
TCTGGATGTTCAACCAGGCTTGCCCATAGCAACGGAAGATCGCCCGGTCG
CGCACACACTGGAAGTCAAGCAGTGCAAGGCAACCATCCACCGCATGTCG
CTTCGATTATATGATGCCAGACATGATTGGCTCTACACCGTTTTTCATTC
TTACATCAAAGGACAAGTGCGTCGCGCGATTGAGTCCTCGGTGGGGAGAT
ACTTAAAGGCATATGTAACAAATATTGACAGGAATGCAACGATCGCCGCA
GTAGGTCACTACCCAGCTACTCGCCACATCATGGTATCCAGCCAACAGGA
ACAGAAGGAGCATCAAGAGCACTATCGAGGTCATGAAAAAGAGCAGTTAG
GAGCAACGATACCATTAAGGTCGGCTCGTACCGTTCGCTCTACCAGTGTG
GGTGAGGATGACGTGCCACAAATTCATCGACTTGTTGAAGAGGACGGATT
CAAAAGGTAA

Synonyms

Publications