rna4907, rna4907 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4907
Unique Name	rna4907
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	964
Alignment location	CM002464.1:634793..637769 -

Link to JBrowse

Properties


Property Name	Value
Product	polyol monosaccharide transporter 4
Orig transcript id	gnl\|cribi\|Naga_100176g6.1050.mrna
Orig protein id	gnl\|cribi\|Naga_100176g6.1050
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:634793..637769 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100176g6	gene4738	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25781.1	cds4895	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4907	rna4907-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:634793..637769-
coding sequence from alignment at CM002464.1:634793..637769-

mRNA sequence

>rna4907 ID=rna4907|Name=rna4907|organism=Nannochloropsis gaditana|type=mRNA|length=964bp
ACCCCTGTCAGGCCTGGGCAAGAATGTTTGTGACCGCACGAGCCTAGGCA
TAATTTGCTCCTCTTATTTCCCGCACATGTGTGCTGCAAGTCTCCTCGAT
CGCAAGAGGCCAGGCTCACGGGCCCCCCCTTACGACCCTGCCTGCGTGCG
GTCAGGTCATCTCAGTCTACTGCAAGGCAAATCTCACAGGCGGCACCAAA
CATGTTTCTTCCTCAAACCTCATACAGATGACTCTGCGACGCTTTCTGCA
AGGTGGTGCACTTGCGGCAGCAGGGGCTAAGTTGGGATGGCAAAGAGCCG
CGATGTCTCCTGTGCTTGCCATGAGATCTGTGTCTTCGACGTCTGCAATT
CGTGCGCCTTCGGAGGGAAATGAAGTGCCGGCGGCCACGAAGAGTGAGGA
GCAAGAGGGCAGGGAGGCAGCAGGCACCCCATGGACGCCCGCCCCGGTGG
CAGAAGACTACGAGGAGACCATTCAGATCTTACTGAACAGTCACAAGGTG
GAGGACGCACTTGACATATTCGGGCGCATGATCAAGCGCGGTTTCCGGCC
GAGCTCTGCGATCACTGACGACCTCTACGAGGCGGCCAAAACCAAGCCCG
AGTGGCAGGCAGCAGCAGTGAAAGCTCTCCAAGGGTTACCTTAAATCGAT
GCTTCTGGTCTATTCGTCTGAAGAGGAAGAGGAGGGTGAGAAGGGATCTC
CCTGTGCTGCGCATGTCTGGTGTGCTGTGCCAGCAGGATGGATTCCTCTG
GGCGAGCGTGTTGTAGCGGAAACGGACGCGTACTGATACAATTGAGGCAG
GCCAGAGCCAAGATATGGGCTTGAGTAAGTGAGCCACGTCAGGTATGCCT
CGGCCGCGGCTCTTGGAATGGACTCACTGGAAGCAGCAGCGTGCCAACTA
CATGACGAATAGGCATCACGCGTGCTTCGAAAGAAAATAAAGAAGGTCAA
GGAGCAAGCTATCG

protein sequence of rna4907

>rna4907-protein ID=rna4907-protein|Name=rna4907|organism=Nannochloropsis gaditana|type=polypeptide|length=638bp
MTAGTETPKCSAQPPVTSWPTRSPIPVSSSSSSARSQILESSATFNQDDL
DVLLLDANYQGKGKFDKFKFLPSTSGTPSEAHLPFASSQSNGTASITTAG
GSGLMDYQTVEHESFLMVAAHRKSRRLVYLCGFVASLTSILLGYDVGVMS
VARKYVDMQLSLTSVQSEVIMGSLNLVAALGGLIAGKTADRFGRNRAIAL
ACLIFLTGSACMTLAWNFRVLLVGRIITGLGVGCGFVIAPVYIAEITPPE
IRGLMVSLTDVCINVGIVLGSVVGFFCELTIADDDAKWRVMLGLGTIPPV
IILSFLRCLPESPRWLLLQDRVPEARHVLKRIVGHEQEAERELIAIEEAI
QMERDVTTDWSEVLCPRHRAILLPVLMGLALGFFQQSSGSEAAVYYSPQI
LAEAGMSSTAHQSLGNIAICLCKFAGEIVAMLSMDRVGRKPLFVSSALGS
GFFLVLAGASFQYSLPPSLLMTSLCLFMAFFSVGMGAITFVVASEIFPLP
VRGKAMALAVFVNRLLSGMVALTFLSLVDAVTYANTFYLFAVISFISTIF
YAGFLPETMGKTLEEISILFEKESAEHEAHIRHEEEAMQRRLAASDELRR
APTPISPLRAFRGEGAASASIAGQYQSTEHGKINEAHA

mRNA from alignment at CM002464.1:634793..637769-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4907 ID=rna4907|Name=rna4907|organism=Nannochloropsis gaditana|type=mRNA|length=2977bp|location=Sequence derived from alignment at CM002464.1:634793..637769- (Nannochloropsis gaditana)
CGAAAACCGCGGGAATACTTTTTAATGCTCGCCCTCTTTTCCCTCTATCC
GACTCAAGGCAACAGCCTCAAGGAGGCGCGATTGAGCAAGGCTAAAGAGG
CGCCTATGCACCATGACTGCGGGGACTGAGACCCCAAAGTGCTCGGCTCA
GCCTCCCGTCACGTCATGGCCAACGCGTTCCCCCATACCTGTGTCCTCCT
CTTCATCAAGTGCACGATCTCAAATCTTAGAATCATCAGCGACATTCAAT
CAAGATGACCTGGATGTTCTGTTGCTTGACGCAAATTATCAAGGCAAAGG
GAAGTTCGACAAATTCAAATTTCTCCCTAGTACTTCAGGCACACCGAGCG
AGGCACATCTCCCGTTTGCAAGCTCCCAAAGCAACGGCACGGCCTCAATA
ACCACAGCGGGGGGCTCTGGCCTCATGGACTACCAAACAGTAGAACATGA
GAGCTTTTTGATGGTGGCAGCACATCGGAAAAGTCGCCGACTCGTGTATT
TATGTGGATTTGTGGCCTCCCTGACGTCCATTTTGCTCGGATACGATGTT
GGCGTTATGTCTGTGGCACGTAAGTACGTGGACATGCAGTTATCTCTGAC
GAGCGTGCAAAGCGAGGTGATTATGGGGTCCTTGAACTTGGTTGCTGCCC
TCGGGGGCCTCATCGCTGGCAAGACAGCAGACCGCTTCGGACGAAACAGG
GCCATCGCCCTAGCCTGCCTCATTTTCCTCACGGGGAGCGCCTGCATGAC
ACTGGCATGGAACTTCCGGGTCCTCCTCGTCGGGCGTATCATTACGGGCC
TGGGAGTGGGCTGTGGCTTCGTAATCGCCCCCGTGTACATCGCGGAGATC
ACGCCCCCCGAGATCCGTGGCCTTATGGTGTCCCTCACGGACGTGTGCAT
CAACGTCGGCATCGTGCTCGGCTCCGTGGTGGGCTTCTTCTGCGAGCTGA
CCATCGCCGACGATGACGCCAAGTGGCGAGTGATGCTTGGCCTGGGGACC
ATCCCGCCCGTCATCATCCTCTCGTTTTTGCGGTGCCTGCCGGAGTCCCC
GCGCTGGCTCCTCCTGCAGGACCGCGTCCCCGAAGCCCGCCACGTGCTCA
AGAGGATCGTCGGGCACGAGCAGGAGGCGGAGCGCGAGCTCATAGCCATC
GAGGAGGCGATCCAGATGGAGCGGGACGTGACGACGGACTGGTCAGAAGT
TCTCTGCCCCCGCCATCGCGCCATCCTCCTCCCCGTCCTCATGGGCCTGG
CGCTGGGGTTCTTCCAGCAGTCTTCCGGCTCGGAAGCGGCCGTGTATTAC
TCCCCACAAATTCTGGCCGAGGCGGGCATGTCGAGCACGGCTCACCAATC
GCTCGGCAACATCGCCATTTGTCTTTGCAAGTTCGCGGGGGAAATCGTGG
CCATGCTCTCCATGGACCGTGTGGGCCGCAAGCCCCTCTTCGTCTCCAGC
GCCCTCGGCTCCGGTTTCTTCCTGGTCCTGGCGGGGGCCTCCTTCCAGTA
CAGCCTCCCTCCCTCCCTTCTAATGACGTCCTTGTGTCTCTTCATGGCTT
TCTTCTCGGTGGGCATGGGCGCAATCACCTTCGTCGTCGCCTCGGAGATC
TTCCCGTTGCCTGTCCGCGGCAAGGCCATGGCGCTCGCAGTCTTTGTCAA
CCGCCTCCTGAGCGGAATGGTCGCCCTTACTTTCTTGAGCCTAGTGGATG
CGGTGACATACGCCAATACCTTCTACCTCTTTGCTGTCATTTCGTTCATC
TCGACCATCTTCTACGCCGGCTTCCTGCCAGAGACGATGGGAAAGACACT
GGAGGAGATCTCAATACTTTTTGAGAAGGAAAGTGCAGAGCACGAGGCTC
ACATACGGCACGAAGAGGAAGCAATGCAACGACGTCTGGCGGCGTCGGAT
GAACTGCGCCGGGCTCCCACCCCCATTTCTCCTCTGAGGGCTTTCCGGGG
CGAGGGCGCCGCTTCTGCGTCCATAGCGGGTCAGTATCAGAGTACGGAGC
ACGGGAAGATAAATGAAGCACATGCTTAAGCTGGTTAGCCGTGTGCCAGG
AAAGAATAACGGATGTGGCGGGGTGCCAAGTCAAGGGAACTGACACGCAA
TGTCGCGTCTGGCACGGAGAGTGCGCGGGGCGTTATCGCCAAAGACTTTG
TGAATAGTTTAGCCAGAACATGGCAGTTCTAGACGTTTTGATGGCATGCC
AATGCCGCGAAATGAGTGGTTGTGGGTTGGTCGAAATTTTTGTGATCTCT
GGGGAATGTTCACGCCCGATGACGATGGGAGACATTGATGAGTTGAGCTA
GAGCGGACTTGGTGTTGAGTGGAAGATTTTTTATCGAGGGATAGTCATCT
TACCTGGCCGGGATTTCAAAGGAGACACGAGGGAAAATGTATATTTTTTT
TATGAAAGGCGCGTGTTGTGCCTCCCCCTTCCGATTGAGATGAGAAGGGA
TGTAAACATGGCGGCGACGAATAAAGCACATAGAATACATAAAAAAGCCT
TCACGGTCATAACATGACCTTGAGCTGTACGGTCCAGACACAAGAATCGA
GTGAGGAGGCTAGGTTGCGGCCCGGGTCGCGAAGGCAACGATGGCTGTCT
ACGGGCATGTTCCGTCCTCCAACGAGATACCATCAAGATAGCCAAATAGA
TGGCCGCAGTCAAGACACAGAAGAAGGCGAATGAAGTAGATAAACAAATT
TTCGGAGAGGAAATAAGCAATTCACAAGAAGGAACTTTTTAAGACGAAGA
CTTGCCTTGATACCACAGTTCCCTTTCCGTTCAAGTTGAGAATGTGTTGT
ACTAACGAGCTTCACAACCTATAGCAGTCAGAAAACCCACAAGGATGTAG
CTGTCCCTGCATGACATCGTGTATGCTTATGAACCGATTTCACTGTTCGA
ACGTACGCCGTATCATATAAAGGAAAATGTTCGCAGAAGAACTCAATAAC
AACGCGAAACAAACAAAATCAACCACC

Coding sequence (CDS) from alignment at CM002464.1:634793..637769-

>rna4907 ID=rna4907|Name=rna4907|organism=Nannochloropsis gaditana|type=CDS|length=1917bp|location=Sequence derived from alignment at CM002464.1:634793..637769- (Nannochloropsis gaditana)
ATGACTGCGGGGACTGAGACCCCAAAGTGCTCGGCTCAGCCTCCCGTCAC
GTCATGGCCAACGCGTTCCCCCATACCTGTGTCCTCCTCTTCATCAAGTG
CACGATCTCAAATCTTAGAATCATCAGCGACATTCAATCAAGATGACCTG
GATGTTCTGTTGCTTGACGCAAATTATCAAGGCAAAGGGAAGTTCGACAA
ATTCAAATTTCTCCCTAGTACTTCAGGCACACCGAGCGAGGCACATCTCC
CGTTTGCAAGCTCCCAAAGCAACGGCACGGCCTCAATAACCACAGCGGGG
GGCTCTGGCCTCATGGACTACCAAACAGTAGAACATGAGAGCTTTTTGAT
GGTGGCAGCACATCGGAAAAGTCGCCGACTCGTGTATTTATGTGGATTTG
TGGCCTCCCTGACGTCCATTTTGCTCGGATACGATGTTGGCGTTATGTCT
GTGGCACGTAAGTACGTGGACATGCAGTTATCTCTGACGAGCGTGCAAAG
CGAGGTGATTATGGGGTCCTTGAACTTGGTTGCTGCCCTCGGGGGCCTCA
TCGCTGGCAAGACAGCAGACCGCTTCGGACGAAACAGGGCCATCGCCCTA
GCCTGCCTCATTTTCCTCACGGGGAGCGCCTGCATGACACTGGCATGGAA
CTTCCGGGTCCTCCTCGTCGGGCGTATCATTACGGGCCTGGGAGTGGGCT
GTGGCTTCGTAATCGCCCCCGTGTACATCGCGGAGATCACGCCCCCCGAG
ATCCGTGGCCTTATGGTGTCCCTCACGGACGTGTGCATCAACGTCGGCAT
CGTGCTCGGCTCCGTGGTGGGCTTCTTCTGCGAGCTGACCATCGCCGACG
ATGACGCCAAGTGGCGAGTGATGCTTGGCCTGGGGACCATCCCGCCCGTC
ATCATCCTCTCGTTTTTGCGGTGCCTGCCGGAGTCCCCGCGCTGGCTCCT
CCTGCAGGACCGCGTCCCCGAAGCCCGCCACGTGCTCAAGAGGATCGTCG
GGCACGAGCAGGAGGCGGAGCGCGAGCTCATAGCCATCGAGGAGGCGATC
CAGATGGAGCGGGACGTGACGACGGACTGGTCAGAAGTTCTCTGCCCCCG
CCATCGCGCCATCCTCCTCCCCGTCCTCATGGGCCTGGCGCTGGGGTTCT
TCCAGCAGTCTTCCGGCTCGGAAGCGGCCGTGTATTACTCCCCACAAATT
CTGGCCGAGGCGGGCATGTCGAGCACGGCTCACCAATCGCTCGGCAACAT
CGCCATTTGTCTTTGCAAGTTCGCGGGGGAAATCGTGGCCATGCTCTCCA
TGGACCGTGTGGGCCGCAAGCCCCTCTTCGTCTCCAGCGCCCTCGGCTCC
GGTTTCTTCCTGGTCCTGGCGGGGGCCTCCTTCCAGTACAGCCTCCCTCC
CTCCCTTCTAATGACGTCCTTGTGTCTCTTCATGGCTTTCTTCTCGGTGG
GCATGGGCGCAATCACCTTCGTCGTCGCCTCGGAGATCTTCCCGTTGCCT
GTCCGCGGCAAGGCCATGGCGCTCGCAGTCTTTGTCAACCGCCTCCTGAG
CGGAATGGTCGCCCTTACTTTCTTGAGCCTAGTGGATGCGGTGACATACG
CCAATACCTTCTACCTCTTTGCTGTCATTTCGTTCATCTCGACCATCTTC
TACGCCGGCTTCCTGCCAGAGACGATGGGAAAGACACTGGAGGAGATCTC
AATACTTTTTGAGAAGGAAAGTGCAGAGCACGAGGCTCACATACGGCACG
AAGAGGAAGCAATGCAACGACGTCTGGCGGCGTCGGATGAACTGCGCCGG
GCTCCCACCCCCATTTCTCCTCTGAGGGCTTTCCGGGGCGAGGGCGCCGC
TTCTGCGTCCATAGCGGGTCAGTATCAGAGTACGGAGCACGGGAAGATAA
ATGAAGCACATGCTTAA

Synonyms

Publications