rna4901, rna4901 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4901
Unique Name	rna4901
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1704
Alignment location	CM002464.1:628686..630536 -

Link to JBrowse

Properties


Property Name	Value
Product	Cobalamin (vitamin B12) biosynthesis CobW
Orig transcript id	gnl\|cribi\|Naga_100176g11.1045.mrna
Orig protein id	gnl\|cribi\|Naga_100176g11.1045
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:628686..630536 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100176g11	gene4734	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25776.1	cds4889	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4901	rna4901-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:628686..630536-
coding sequence from alignment at CM002464.1:628686..630536-

mRNA sequence

>rna4901 ID=rna4901|Name=rna4901|organism=Nannochloropsis gaditana|type=mRNA|length=1704bp
ATGCGACTGGCCGCTGAAGCCAAGGAGCGACTAAAGCAGCAGATTCGGAC
AAATCGACTCGCTTACGAACGCAATCGCATGGTGGGAGGTACCGCGGGCT
CTGCCCCCCTGCGCTCCACGAAGGCCCTGACCATCCCTCAGTCCCCCCAT
TTGCGACTCAGTGCCCGGCGTGGGGAGAAGCACACGAGCACTAGTACTGT
AAGCCATCACAGCAAAGATCCAGCGGTGGAAATCTATGCCAAGCCGCGCC
CAGCCTCTCGCACTGTCTCCCATGGAGCAATCAACGCCAGTCAGAAGGCC
TCGAGGCCCCTGACCGTCCCGATGGCCCCCTCTTTCCACACTGAAATGCG
CGCGCTCGCCCGCCGCAACTCGCCTACATACCAGGGGAGTACCAATGTGC
CCAACGGCAGCTATCAGGCCGAGGCCTTCCCTCAAAGTCACCTTCCGCCC
CTACAGAAGCAGCGCGTCAATGCAAGCGGCGGCGGGGCTCTGCGACAGCA
CGCCCCTCGACATATGTCACCCCGCACGTTGACCGTTCCGCAAACCCTCA
AACTGAGCACCCAAATGCGTGCCGCTGTGCGAAACAATTCGATGGGAGAA
GCTGTTCATGTCGACCTTGGAAAGGGTAGGCAGGGGCAAGAGCGAGATCC
GGAAGAGAATCGGCACCAATTCAAGGCCAGGCCGCTGGACCGTCGTATAC
TAGAGTCGACGGGAGAGATGGGTGTGCCAAAGGTCTCAAAAGGCGGTGTC
ACGATTTCTCAACCATTTCATTTCAAGACGGATAGCCGGCATCGGTTGCG
AGGAGCTCTCTCTGAGGCCGGTCGGGTGCAGACTGAAACGTACGAAGGAA
AGCACCAGCGCAACAAGTCAGTGCCTCTTCAGCTGTCCGCGGCCGAGTCC
AAGATGGCGTCCAAGGCCCGCATAAGTGCTCGAGAGGAGCAGGTGGAGCT
CGAGATGAAAGCTTCTTCCTCGCCTGCTTTGGCTTCCCGAAAAATCCTGT
CCGCAGCGTGCGCGCAAGAAGTCTTGGAAACCAGTGAGCTGCGCCTCCCC
TCGGTTCATCGACAGGACGAGGCGCAAAATGCTTGGCAGCTGGAGATGGA
GTGTCTTGAAACAGCGGAGCACATGCAGTTTGGGGGTTCTTTGGAAGAAA
GTGGCCCTGGCTCCCTCGTTGAGCGGGCTCTATCGAAACCTTTGAAGGTA
GTCCATCGGCATCCTCATTCTGAGAATTTGAGCACCTCCGCACGCGTCCT
GGACCGCAAAGCATCCGAGGATATTATACAGGAGCGAAGCGAAGAAGCAC
CTGGCGACAAGGCCCGACCCCGGGATGCGAGAGATGATTTTCGCGGCGCA
CGCTTGACTTCAAAAATGCAGCCCGACTCGACTTCGAAGCCGGCTCCAAA
GGGGAATGGCTTAGGTACCGGCTCGCGTGTACGCAAGTTGACGGCATGTA
TAGAGGGGACAGGACCTGGTAGGCATGAGAGACCGCTATTCCATCTTCTT
GTCGAAGCAGAAATAATGCCTGCAGGAGTTGTCAGCGGCCACGCCATCTG
CATAGCGCGATTGTGTAATGCATATTTGGAGGAAAAAGTCGAGTTTGCTT
CGTTTTTTGGGGGGCACACCATTTATGGGAAGCAGAAAAAGGAACGTGAG
CGAGCTCGGGCTACTGAGATTCATTTCATACCCTCTTTGAAAGAAAAATT
GTGA

protein sequence of rna4901

>rna4901-protein ID=rna4901-protein|Name=rna4901|organism=Nannochloropsis gaditana|type=polypeptide|length=616bp
MTDPINMCMTYEQRTLDALTTPFILPVTIITGYLGSGKTTLLRKLLTQKK
NLRIAAMVNDLGDFNHDVQLLQLEKTVANSSSPSNHGFSQAARLSPDKSN
APSDRIMDLHGSCLCCSHLQQEMRQNIWECLQTPEQEERAIDYLVIETSG
VTDPERIIQALDEKFGKMTRARLDSVVTMVDADVLHAELVDSTPAVRDTR
GATLSAHVPSASHPGIPPTRRRQIECADVIILNKTDLVKDLAYLDDLEAF
LRKLNPLARIHRTRFADLPLPCVLDVELPDLGAGSMTHEESNALYATRKV
STLRSEPSQAVSSRARKTDLFTGAATAASDQNSRSHLVSEGISAFTFESK
SPFLLRKLQRFFSHVFPAEAVIRSKGFLYVRELAGRRVALSISGRRRFHL
SDEGTWSSAPGTQVVFIGRLSGYQKSQIQTSLQNACKADDEETSFPLSDP
HLASSSLAARIRDMIALDKRMEVMDARAILGPLLRQQLKRNYVGAAPHSL
PSWVDCLVTFRLTGAPSLGVTADHLRLTHGVDLDALNISLQQKVNMAGIQ
GRPLLYTLPFDGEERGIALCFVVEEGNAEDGKGRAYFSSTWEWVTLLADS
VIARNLSHLKLCKCGH

mRNA from alignment at CM002464.1:628686..630536-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4901 ID=rna4901|Name=rna4901|organism=Nannochloropsis gaditana|type=mRNA|length=1851bp|location=Sequence derived from alignment at CM002464.1:628686..630536- (Nannochloropsis gaditana)
ATGACAGATCCTATCAATATGTGCATGACTTACGAACAGCGTACGCTAGA
TGCCTTGACGACGCCTTTTATTCTCCCTGTAACGATTATTACGGGATACC
TCGGCAGCGGCAAAACAACCCTTCTACGCAAGTTGCTGACACAGAAAAAA
AACCTTAGAATAGCGGCGATGGTCAATGATTTGGGTGATTTCAACCACGA
CGTGCAACTTTTACAACTGGAGAAAACGGTGGCCAACTCCTCCTCACCGA
GTAACCACGGTTTCTCCCAAGCCGCCAGACTCTCTCCAGATAAGAGTAAC
GCCCCCTCCGACCGCATTATGGACTTACATGGCAGTTGTCTGTGCTGTTC
ACACCTACAGCAAGAAATGAGACAGAATATTTGGGAATGTCTGCAGACAC
CAGAGCAAGAAGAACGGGCGATCGACTACCTAGTGATAGAGACTAGCGGC
GTGACGGACCCTGAGAGGATTATCCAGGCGCTGGACGAGAAATTCGGCAA
GATGACACGAGCTCGCCTTGACAGCGTCGTTACTATGGTGGACGCTGATG
TATTACATGCAGAATTAGTGGACTCTACACCTGCTGTTCGTGACACGAGA
GGTGCTACCTTGTCTGCGCACGTACCCTCCGCATCTCATCCAGGAATTCC
CCCGACACGACGCCGTCAAATCGAGTGCGCCGACGTGATTATACTGAATA
AGACGGACCTAGTGAAAGACCTAGCTTATCTCGATGATTTGGAAGCGTTC
TTACGGAAGCTTAACCCGCTTGCACGCATACACCGGACACGCTTCGCTGA
CTTACCTCTACCCTGCGTGCTTGACGTGGAGTTACCTGATTTGGGGGCGG
GGAGCATGACACACGAAGAAAGCAACGCTCTTTATGCTACCCGAAAGGTC
TCCACTCTTCGATCTGAGCCTTCTCAAGCTGTCAGCAGCAGAGCCAGAAA
GACCGATCTCTTCACCGGGGCCGCGACGGCGGCCTCGGACCAGAATTCAA
GGTCCCATTTAGTGTCTGAGGGCATCTCTGCCTTTACATTCGAGAGTAAA
AGCCCTTTTTTACTTCGTAAATTACAGCGCTTCTTCTCCCACGTCTTCCC
TGCAGAGGCGGTAATACGCAGCAAGGGTTTTCTGTACGTACGGGAATTGG
CAGGTCGCCGGGTCGCCTTATCCATAAGTGGGCGTCGCCGTTTCCATCTC
TCAGACGAGGGAACATGGTCTTCCGCACCCGGGACGCAAGTCGTTTTCAT
CGGGCGACTCTCAGGTTACCAGAAAAGCCAAATACAAACATCGCTACAAA
ATGCCTGCAAAGCTGATGATGAGGAAACATCCTTTCCACTATCAGATCCT
CATCTGGCTTCTTCGTCTTTGGCGGCACGAATTCGGGATATGATTGCCCT
GGACAAGCGAATGGAGGTCATGGATGCTCGCGCAATTTTGGGGCCCCTGT
TACGGCAGCAACTAAAGAGGAACTATGTAGGAGCAGCACCTCATTCTTTG
CCGTCCTGGGTGGATTGTCTCGTGACGTTCCGCCTGACTGGGGCCCCATC
ATTGGGAGTCACAGCCGACCACCTAAGGCTGACACATGGGGTGGATTTGG
ACGCCCTAAATATCTCATTGCAACAGAAGGTCAACATGGCAGGAATACAG
GGAAGGCCGCTGTTGTACACTCTCCCTTTTGATGGGGAGGAAAGGGGAAT
AGCATTGTGTTTTGTGGTAGAAGAGGGGAATGCAGAGGATGGGAAAGGGA
GGGCTTACTTTTCCTCAACATGGGAATGGGTGACATTGCTTGCCGACTCT
GTCATCGCTCGCAATCTCAGTCATTTGAAACTTTGCAAATGTGGACACTA
G

Coding sequence (CDS) from alignment at CM002464.1:628686..630536-

>rna4901 ID=rna4901|Name=rna4901|organism=Nannochloropsis gaditana|type=CDS|length=1851bp|location=Sequence derived from alignment at CM002464.1:628686..630536- (Nannochloropsis gaditana)
ATGACAGATCCTATCAATATGTGCATGACTTACGAACAGCGTACGCTAGA
TGCCTTGACGACGCCTTTTATTCTCCCTGTAACGATTATTACGGGATACC
TCGGCAGCGGCAAAACAACCCTTCTACGCAAGTTGCTGACACAGAAAAAA
AACCTTAGAATAGCGGCGATGGTCAATGATTTGGGTGATTTCAACCACGA
CGTGCAACTTTTACAACTGGAGAAAACGGTGGCCAACTCCTCCTCACCGA
GTAACCACGGTTTCTCCCAAGCCGCCAGACTCTCTCCAGATAAGAGTAAC
GCCCCCTCCGACCGCATTATGGACTTACATGGCAGTTGTCTGTGCTGTTC
ACACCTACAGCAAGAAATGAGACAGAATATTTGGGAATGTCTGCAGACAC
CAGAGCAAGAAGAACGGGCGATCGACTACCTAGTGATAGAGACTAGCGGC
GTGACGGACCCTGAGAGGATTATCCAGGCGCTGGACGAGAAATTCGGCAA
GATGACACGAGCTCGCCTTGACAGCGTCGTTACTATGGTGGACGCTGATG
TATTACATGCAGAATTAGTGGACTCTACACCTGCTGTTCGTGACACGAGA
GGTGCTACCTTGTCTGCGCACGTACCCTCCGCATCTCATCCAGGAATTCC
CCCGACACGACGCCGTCAAATCGAGTGCGCCGACGTGATTATACTGAATA
AGACGGACCTAGTGAAAGACCTAGCTTATCTCGATGATTTGGAAGCGTTC
TTACGGAAGCTTAACCCGCTTGCACGCATACACCGGACACGCTTCGCTGA
CTTACCTCTACCCTGCGTGCTTGACGTGGAGTTACCTGATTTGGGGGCGG
GGAGCATGACACACGAAGAAAGCAACGCTCTTTATGCTACCCGAAAGGTC
TCCACTCTTCGATCTGAGCCTTCTCAAGCTGTCAGCAGCAGAGCCAGAAA
GACCGATCTCTTCACCGGGGCCGCGACGGCGGCCTCGGACCAGAATTCAA
GGTCCCATTTAGTGTCTGAGGGCATCTCTGCCTTTACATTCGAGAGTAAA
AGCCCTTTTTTACTTCGTAAATTACAGCGCTTCTTCTCCCACGTCTTCCC
TGCAGAGGCGGTAATACGCAGCAAGGGTTTTCTGTACGTACGGGAATTGG
CAGGTCGCCGGGTCGCCTTATCCATAAGTGGGCGTCGCCGTTTCCATCTC
TCAGACGAGGGAACATGGTCTTCCGCACCCGGGACGCAAGTCGTTTTCAT
CGGGCGACTCTCAGGTTACCAGAAAAGCCAAATACAAACATCGCTACAAA
ATGCCTGCAAAGCTGATGATGAGGAAACATCCTTTCCACTATCAGATCCT
CATCTGGCTTCTTCGTCTTTGGCGGCACGAATTCGGGATATGATTGCCCT
GGACAAGCGAATGGAGGTCATGGATGCTCGCGCAATTTTGGGGCCCCTGT
TACGGCAGCAACTAAAGAGGAACTATGTAGGAGCAGCACCTCATTCTTTG
CCGTCCTGGGTGGATTGTCTCGTGACGTTCCGCCTGACTGGGGCCCCATC
ATTGGGAGTCACAGCCGACCACCTAAGGCTGACACATGGGGTGGATTTGG
ACGCCCTAAATATCTCATTGCAACAGAAGGTCAACATGGCAGGAATACAG
GGAAGGCCGCTGTTGTACACTCTCCCTTTTGATGGGGAGGAAAGGGGAAT
AGCATTGTGTTTTGTGGTAGAAGAGGGGAATGCAGAGGATGGGAAAGGGA
GGGCTTACTTTTCCTCAACATGGGAATGGGTGACATTGCTTGCCGACTCT
GTCATCGCTCGCAATCTCAGTCATTTGAAACTTTGCAAATGTGGACACTA
G

Synonyms

Publications