rna49, rna49 (mRNA) Nannochloropsis gaditana

Overview
Namerna49
Unique Namerna49
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2281
Alignment locationCM002455.1:145470..146361 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100440g4.2720.mrna
Orig protein idgnl|cribi|Naga_100440g4.2720
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:145470..146361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100440g4gene47Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna49rna49-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30625.1cds49Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna49 ID=rna49|Name=rna49|organism=Nannochloropsis gaditana|type=mRNA|length=2281bp
CTCATGTAGTTATGCAATCTCGGGAATTTCCCAGATTTGCGAGCACGATG
AGCTTATCGTAGGCACATCGGAAAGACCACAAGTTCATGAAACGAGACTG
CAATGCGGACAATCTAGGACGAGGATGGACTGCGGCGACGTTTTTTCATG
CTATTTCTTTCGACCTGGTAGCTGGGAAATACTATACACCCTTCCATTGT
ATTAGAAATATGCGTTCGAGCGTCTTTTTACGTTACATGGCTGCGCATAG
GCCTACCACTCTTTCCAACTCACCATGGACAACATTCCCATTCAATGCCC
CGACATCAGCCAGAAACAAAGCATACATTTGAAAAAGGAAACAGAATATT
ATGCGACCGCTGTCCTGGTGTCTATAAAATATGCCAGACAGACCCGAGTT
GCGGTCGTGCGGCTCAGTTCTATCGTTCGCGTCCCTCGCTTCCATGGCCT
CGGCAGTTTTTATCCCGAGATTGGCTTGGATCGGTCAAACAAAGCGCGTC
TTATTCTACGATGAGGAGGAGAATACTATCGAAATCACCAGCCGATTTGC
CTTTGGCTTCGCGTGGACCCGACAAAGCATCATTACGGATGTCGATCAAG
TTGTCTATCGGCAGGATTCCTACCACTGGTAAGCTGTCTTTTTCCTGTTC
CCCCATTGCCTTCCTTCCTTTCGTGGCCGCGGCACATGAATCCCTCCGTT
TCTACGGATCAAATGACGTGTGCAGCCCTACACTCTATCTAACTTCCTCC
GTCGTGTTTCATCTCCTCGGTGTCGCCGACAGCACATTTTGTCCGAGAAA
AGCGGGTACTGGCAATCTTCCCTCGTTGGTTGTCAGCAGTGCGTCCTGCA
TGCCGCCCTCCTCTCACAACGCCTCGCACTCATCCCCCCGTTCCCTTCCT
TCTAGGTGCGAAGGCGACAGCCAAGGCATACCTACCGATACGCAAAGGCA
ACTCTGCCACCTACAGCGTCGGGTTTTTGAGACTACCCTGACTTATTTAT
GCCTCGCATTTGCAGTTAGCTTGATGTTAATCTGTGTGAAACCCAAGAGG
AGAAGAAACGTCTGTCTGGTCCTCGGTGTGGTGGCAATCCTCTCCGTCGC
CCAAGTAGGCACAGGGTTGGCGATGGTGGGAACATGGGCTGCCCTCAAGA
ACGCTTTGGAACGGGTAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGA
AGGGTATGGATAAAGTAGGTCGAAGAAAAAGAAAGAAAGGAGGGCAGGCA
GGCGGGACGTCCTCAAGTGCACCCCTGAGGCTTTTTCTCAGAGGAAGGAA
AAAAAAACAAGCCTGTGAAAGAGGGATTGATCATCATATTGAAAGGGCGA
ACAGCGAGCAAGGCAAGGTTTTCTGCTCCCCTCCGTAGCGTCTCCTGCTT
TCCTCCGCAGCGTCTCCCTGCACCCCATTCACTCCTTTCTCTCTCTCTAG
TTCTTTTCCGAAGCATACGTGGAGGTCAATAACTTGAAGATGAGTATCCA
ATTGGGTGGATACCTGGCTCTTGCCTCAGGTCTGGCGGCGGCAGCGGCGA
CTTTCCTCGCTTTCTGCATGATTGTCGAATCGAATCGGCGGGAAATTGTC
GGGACGCCAAGGACGGTAGCTCGGAAAAAAGGGGTGAGGGACCAAGGGGG
GGCAAGAAAAAGAAAAGACGTGCATAAAACTTCCGACGTGACGGACGAAA
CATATCCTCCCAGGCAACAATCAAGCCGCGGATGGCGTTCCGTGTTTATA
CCTTGTCAACATCTCAATTATGTCCGTCTTTCCCAATAGGATGTCTTGCT
GCGTCAAGACAGAGAAGTAGGAACCTACGTGGCGGAGCCCAGGGGTGGAG
TGGAAATGAATGCATACCCGGAGTTTTCCTCCCATCGAGGTGACAGACTC
AGGGAACCTGGGATTTCGTGGGGCGTAAGCGAGACCTCTTCGCCCACTTC
GCCCGTGCGACGGTTACCTCGTGGGCATGGGACTTGATAAGCATTCATTA
CAAAGGAGAGAGAGGAATCACTAAAGGGTGCTGTATGCCCGGGGGGAAAA
TTGCTGGGAATGTAGAGAGAGCATCTTCGAACTGTATAATAGGCGGTTGC
GACGTCACAGTTGCCAGACATGAGATTCGCTACCGTGAGAATGGGCAAAA
GAAAAAGAAAAATGAAGCTGAGCACGCATCGAGGACACGCGTGGCTTTTA
TTTTTCCCTGACGGTCGCGTACTGCTGCCTACGTTTTAACGCGTTCAGCC
TACCAAAATGCACAATTATCCTTTTCAACAC
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protein sequence of rna49

>rna49-protein ID=rna49-protein|Name=rna49|organism=Nannochloropsis gaditana|type=polypeptide|length=149bp
MSWGGWMPNFGIGKDNLPSFFVLDFPSQKHWVLEAKGGLRVWATQEVAED
TLAAFLVDVVEGKVPAKQPGLLGGMPAAIWTRVVDLWPWSLALLLPLGWI
FAACLGGIAVVDKEEEELRGEGEGERPVGDAGEDDRLGAGKAAVSKKED
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mRNA from alignment at CM002455.1:145470..146361-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna49 ID=rna49|Name=rna49|organism=Nannochloropsis gaditana|type=mRNA|length=892bp|location=Sequence derived from alignment at CM002455.1:145470..146361- (Nannochloropsis gaditana)
ATGTCTTGGGGTGGCTGGATGCCCGTCGTTGGGAAGGCTTTGTGAAGGTG
CCAACATTTTCCTCCTCGCCTCTCTCTCTCTCTCTTCTTTTTTTTCCTTT
TCCGAGGCAACCCATGGCAGGCGGGATGTTTTGTTTGCTTTCGAATGAGG
GGGACGGGGGGGAGAGAACAGGAAGTCTCCCTTCTTCTTGGATTCTTTTC
GGGGGGGGTGGCGCGTGTTTAGGAGGCCGATTTACGCTCGTAACGGCCCT
CGTTCGTTTCCTTCCTTTCTCATCACCAGACTCCCATTTGCACTAACCGC
CTCTCCCTCCTCTCCCCCTCCCCCTCCCCCTTTCCTCCAGAACTTCGGCA
TCGGCAAGGACAACCTGCCTTCCTTCTTCGTCCTGGATTTTCCCTCTCAG
AAGCACTGGGTCTTGGAGGCAAAGGGAGGACTGCGGGTGTGGGCGACGCA
GGAAGTGGCCGAGGATACGCTGGCTGCTTTCTTAGTGGATGTGGTGGAGG
GGAAGGTAGGGTGGGAAGAAGGAGGCGCGTGAAGCCTCTGTAGCTCGCTC
GTTCGGTGCATCCGTGAGAGTCCTTTATGCCTTTGCCCTTCTCGTTTCCT
CCTTTCTTACCTCTATGTCTTCCTTTCCCAGGTCCCTGCCAAACAGCCAG
GCCTCTTGGGGGGGATGCCTGCTGCCATTTGGACCCGCGTGGTGGACCTG
TGGCCGTGGTCGCTCGCCCTTCTTCTCCCGCTTGGATGGATTTTTGCCGC
TTGTCTGGGTGGCATTGCCGTTGTGGATAAGGAAGAGGAGGAGCTGCGGG
GGGAGGGGGAAGGGGAAAGACCTGTGGGGGACGCGGGAGAGGACGACAGA
CTTGGAGCAGGGAAAGCCGCGGTGTCCAAGAAGGAAGACTGA
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Coding sequence (CDS) from alignment at CM002455.1:145470..146361-

>rna49 ID=rna49|Name=rna49|organism=Nannochloropsis gaditana|type=CDS|length=1350bp|location=Sequence derived from alignment at CM002455.1:145470..146361- (Nannochloropsis gaditana)
GTCCCTGCCAAACAGCCAGGCCTCTTGGGGGGGATGCCTGCTGCCATTTG
GACCCGCGTGGTGGACCTGTGGCCGTGGTCGCTCGCCCTTCTTCTCCCGC
TTGGATGGATTTTTGCCGCTTGTCTGGGTGGCATTGCCGTTGTGGATAAG
GAAGAGGAGGAGCTGCGGGGGGAGGGGGAAGGGGAAAGACCTGTGGGGGA
CGCGGGAGAGGACGACAGACTTGGAGCAGGGAAAGCCGCGGTGTCCAAGA
AGGAAGACTGAAACTTCGGCATCGGCAAGGACAACCTGCCTTCCTTCTTC
GTCCTGGATTTTCCCTCTCAGAAGCACTGGGTCTTGGAGGCAAAGGGAGG
ACTGCGGGTGTGGGCGACGCAGGAAGTGGCCGAGGATACGCTGGCTGCTT
TCTTAGTGGATGTGGTGGAGGGGAAGATGTCTTGGGGTGGCTGGATGCCC
GTCCCTGCCAAACAGCCAGGCCTCTTGGGGGGGATGCCTGCTGCCATTTG
GACCCGCGTGGTGGACCTGTGGCCGTGGTCGCTCGCCCTTCTTCTCCCGC
TTGGATGGATTTTTGCCGCTTGTCTGGGTGGCATTGCCGTTGTGGATAAG
GAAGAGGAGGAGCTGCGGGGGGAGGGGGAAGGGGAAAGACCTGTGGGGGA
CGCGGGAGAGGACGACAGACTTGGAGCAGGGAAAGCCGCGGTGTCCAAGA
AGGAAGACTGAAACTTCGGCATCGGCAAGGACAACCTGCCTTCCTTCTTC
GTCCTGGATTTTCCCTCTCAGAAGCACTGGGTCTTGGAGGCAAAGGGAGG
ACTGCGGGTGTGGGCGACGCAGGAAGTGGCCGAGGATACGCTGGCTGCTT
TCTTAGTGGATGTGGTGGAGGGGAAGATGTCTTGGGGTGGCTGGATGCCC
GTCCCTGCCAAACAGCCAGGCCTCTTGGGGGGGATGCCTGCTGCCATTTG
GACCCGCGTGGTGGACCTGTGGCCGTGGTCGCTCGCCCTTCTTCTCCCGC
TTGGATGGATTTTTGCCGCTTGTCTGGGTGGCATTGCCGTTGTGGATAAG
GAAGAGGAGGAGCTGCGGGGGGAGGGGGAAGGGGAAAGACCTGTGGGGGA
CGCGGGAGAGGACGACAGACTTGGAGCAGGGAAAGCCGCGGTGTCCAAGA
AGGAAGACTGAAACTTCGGCATCGGCAAGGACAACCTGCCTTCCTTCTTC
GTCCTGGATTTTCCCTCTCAGAAGCACTGGGTCTTGGAGGCAAAGGGAGG
ACTGCGGGTGTGGGCGACGCAGGAAGTGGCCGAGGATACGCTGGCTGCTT
TCTTAGTGGATGTGGTGGAGGGGAAGATGTCTTGGGGTGGCTGGATGCCC
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Synonyms
Publications