rna4898, rna4898 (mRNA) Nannochloropsis gaditana

Overview
Namerna4898
Unique Namerna4898
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length373
Alignment locationCM002464.1:620202..621426 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100176g14.1044.mrna
Orig protein idgnl|cribi|Naga_100176g14.1044
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:620202..621426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100176g14gene4731Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25775.1cds4886Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4898rna4898-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4898 ID=rna4898|Name=rna4898|organism=Nannochloropsis gaditana|type=mRNA|length=373bp
GAGGAGGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGACGGA
GGAGGCGGGGCCAGAAAAAGAATTCGAACATGTGGAGGAGGTAGCGGGTA
AGGCAGCTGAGAGCATGGCTTTGAATGGGAAGGAGGAGGAGGGTTCAGAG
GGCGAAGGGATGGACAGGGGCGTGGGCTTCGGCGAGAATGGGGAGGAGAA
CGAGGAGGCAGCGGGTAGCGGTGTACATAAAGGGAGAGAGGGGAGTGAGG
ATAAGAGGGGGTATGAGGGCGCATCTATAGAGGACGAAGATGAAAGACTT
GTGAAGGCGTGACAAAATAGTGCGAATGGTGGATAATCCCCCAAAAGAAA
TCAGACATGTTGAAAGCTAAGAA
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protein sequence of rna4898

>rna4898-protein ID=rna4898-protein|Name=rna4898|organism=Nannochloropsis gaditana|type=polypeptide|length=285bp
MKRNRHQQEEWESFLQSLPAAPARIFVSLIYSLPRVQEEGREEVQRENRY
SGTDRLLLLWHGRHLENIRCHGIVTKREEGAGFWLDDGSGLVQVLLGERV
GKDLIPPLGQLCEVVGALRYAGKDTAIDASTGKQGQQMRNQEEDRRLTCA
RQRVVVAGHVFQPRDANAETAFMLSIISWLKKHSAAHSSSTSKALKTACL
QSAPPRLREAASSFPRPNPPSTSGPSDVDSRIMDAILRHTDRETKRGMTP
QALEAIAAPREVQASLSRLQVEGSVYEMHGAFFPL
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mRNA from alignment at CM002464.1:620202..621426-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4898 ID=rna4898|Name=rna4898|organism=Nannochloropsis gaditana|type=mRNA|length=1225bp|location=Sequence derived from alignment at CM002464.1:620202..621426- (Nannochloropsis gaditana)
TACCCACACAGGGCGGCATGAAACGAAATCGACATCAGCAAGAAGAATGG
GAATCATTTCTCCAATCATTACCTGCAGCACCCGCCCGTATATTTGTCTC
ACTTATATACTCCTTGCCGCGCGTGCAGGAGGAGGGGAGGGAGGAGGTAC
AACGCGAGAACAGGTATTCGGGGACGGACAGGCTACTTTTATTGTGGCAT
GGTCGGCACCTGGAGAATATAAGATGTCATGGCATTGTAACGAAACGCGA
GGAGGGGGCAGGATTTTGGCTGGATGATGGAAGCGGCCTTGTACAGGTGC
TCCTCGGCGAGAGGGTTGGAAAGGACCTGATCCCCCCGCTTGGCCAGCTG
TGTGAGGTAGTTGGGGCGCTGCGGTACGCTGGGAAAGACACTGCAATAGA
CGCATCTACAGGAAAGCAGGGGCAACAGATGCGGAATCAAGAGGAGGACA
GGCGACTTACCTGCGCGCGGCAGCGGGTCGTGGTGGCAGGTCACGTCTTT
CAGCCCCGCGATGCCAATGCAGAAACTGCATTTATGCTATCTATTATATC
GTGGCTTAAGAAGCATTCCGCTGCACATTCCTCATCCACCTCTAAGGCAT
TAAAGACGGCATGTCTGCAGTCGGCTCCACCTCGCTTACGGGAGGCCGCT
TCCTCCTTCCCGCGGCCTAACCCCCCCTCGACCTCGGGTCCCTCGGACGT
TGACAGCCGGATCATGGACGCCATACTGCGCCACACAGACCGCGAGACGA
AGAGAGGCATGACGCCTCAGGCACTCGAAGCCATCGCCGCACCTCGCGAA
GTCCAAGCAAGCCTGTCGAGACTGCAGGTGGAGGGCTCGGTCTACGAAAT
GCACGGCGCCTTCTTCCCCCTCTGAGGAGACGGTCTGAAAGGGTGCTGGG
ATGCAGGGTGGTTGAGTGGGCGGTCCGCACTGATGATGAAGTGAGGCTGC
ATGTGTTAAAAAAGTGTAAAGTACAAAGATCTCACTTTCTTAGCTTTCAA
CATGTCTGATTTCTTTTGGGGGATTATCCACCATTCGCACTATTTTGTCA
CGCCTTCACAAGTCTTTCATCTTCGTCCTCTATAGATGCGCCCTCATACC
CCCTCTTATCCTCACTCCCCTCTCTCCCTTTATGTACACCGCTACCCGCT
GCCTCCTCGTTCTCCTCCCCATTCTCGCCGAAGCCCACGCCCCTGTCCAT
CCCTTCGCCCTCTGAACCCTCCTCC
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Coding sequence (CDS) from alignment at CM002464.1:620202..621426-

>rna4898 ID=rna4898|Name=rna4898|organism=Nannochloropsis gaditana|type=CDS|length=858bp|location=Sequence derived from alignment at CM002464.1:620202..621426- (Nannochloropsis gaditana)
ATGAAACGAAATCGACATCAGCAAGAAGAATGGGAATCATTTCTCCAATC
ATTACCTGCAGCACCCGCCCGTATATTTGTCTCACTTATATACTCCTTGC
CGCGCGTGCAGGAGGAGGGGAGGGAGGAGGTACAACGCGAGAACAGGTAT
TCGGGGACGGACAGGCTACTTTTATTGTGGCATGGTCGGCACCTGGAGAA
TATAAGATGTCATGGCATTGTAACGAAACGCGAGGAGGGGGCAGGATTTT
GGCTGGATGATGGAAGCGGCCTTGTACAGGTGCTCCTCGGCGAGAGGGTT
GGAAAGGACCTGATCCCCCCGCTTGGCCAGCTGTGTGAGGTAGTTGGGGC
GCTGCGGTACGCTGGGAAAGACACTGCAATAGACGCATCTACAGGAAAGC
AGGGGCAACAGATGCGGAATCAAGAGGAGGACAGGCGACTTACCTGCGCG
CGGCAGCGGGTCGTGGTGGCAGGTCACGTCTTTCAGCCCCGCGATGCCAA
TGCAGAAACTGCATTTATGCTATCTATTATATCGTGGCTTAAGAAGCATT
CCGCTGCACATTCCTCATCCACCTCTAAGGCATTAAAGACGGCATGTCTG
CAGTCGGCTCCACCTCGCTTACGGGAGGCCGCTTCCTCCTTCCCGCGGCC
TAACCCCCCCTCGACCTCGGGTCCCTCGGACGTTGACAGCCGGATCATGG
ACGCCATACTGCGCCACACAGACCGCGAGACGAAGAGAGGCATGACGCCT
CAGGCACTCGAAGCCATCGCCGCACCTCGCGAAGTCCAAGCAAGCCTGTC
GAGACTGCAGGTGGAGGGCTCGGTCTACGAAATGCACGGCGCCTTCTTCC
CCCTCTGA
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Synonyms
Publications