rna488, rna488 (mRNA) Nannochloropsis gaditana

Overview
Namerna488
Unique Namerna488
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1848
Alignment locationCM002455.1:1222063..1224267 -

Link to JBrowse

Properties
Property NameValue
ProductPeptidoglycan-binding lysin domain protein
Orig transcript idgnl|cribi|Naga_100090g7.8830.mrna
Orig protein idgnl|cribi|Naga_100090g7.8830
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1222063..1224267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100090g7gene469Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30181.1cds488Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna488rna488-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna488 ID=rna488|Name=rna488|organism=Nannochloropsis gaditana|type=mRNA|length=1848bp
TTGAGGGCTCTTTTTGCGGTGTGCACGTCTCACCCACGATCTTCCTCTTT
CTAACTTTATGATCGGCCAATGCGTTGCTGTGCGGACGTTCTATCGAGGT
TTCTCATCACGATTTTCTCTGTCCGTTCTAAGAACAGTTGGAAAAGTGGC
GTCCTCCTTATCATCTGTTCGGAGCTACGGTACTTTTTTACCTCTGCTGC
CGTCTTCATGGGAGGAGGACCCCATTACTAGCACTCCATCGAGCTTGACT
TCGTCGAGGACGGCCAATGGCCTGGTATTCCCCGTCTTGTACAGGTGCCT
ACTCCTTGCGGATAGAGAGGGTGAGCTCTGCGGCGTAAGGCTGGGTTCCG
GCAGGCGGCCCGGAGAGCAACTAATCGTCTCCGAGATCGTCAGCGAGAGC
GTGCAGGAGGTGTGTCAGATACGGAAGGGGGACATCGTCACCCATGTCAA
CGGGGCACCCGTGGGCGCCTCCTTCCTTCCCGCACGGGGAGCCCGACGCC
GCCTGCCCGTGGATGAAGAGGGGGATGCCGGGCTTACACAGGGATGGCCC
ATGACATGCCCGTCTACGCAAGCATTGGGAAGGGCTTTCTCACCTGGTTT
CGAGGGCGAGCACCAGGTCCCGCCACTCCCTTCGGCGCTACCAGGGCGAC
CCAAGTTCCGAAACTGCTCTCCTTCTGTCGTCGAGCTCCGGCTGATACGG
GCCAACAGCCTGCCAACCACTCCCCCTTTCTCCTCCTCGCCTTCCTCCCC
TCCCTCATTTCCGTCCTCGCCAGCTTCGTCCTCCCTTCTCCGCCCGGAGC
TTCCCATTTTTTACTACGAGACCCATCCCCGCGACAGCTTGGAGAGCATC
GCGCTGCTGTTTCAGACCACGCCCGAGGTCATTCGCAGGGATAACCGGGG
CTATTTTCGCGCGGGGGAGCGAGCAGAGGGGACGGTCCCGCCCGGATTGC
TTTTGAAGATTCGGAACCCCTCCTTCCTGGGCGGCAACGGACCGGGGACA
GAGGAGAAAGGGCGCGAAGAAGAGGAGGAAGAGGCGGACGGGGCGGAAGG
GGAAGTTGGCGTGCTTGTCCAATCGAGGGAGGGCTCACCCGTACTGGCCT
CTGGTGACCTGCGGAGCGACAGCCCCTCTTCCCCCCTTTCCCTCCCAACC
TCCCCCCGCACGTCGTGCCAGAGCCGGTACTGGGAGGTGGGGGCCGGGGA
GTCGGTCTCGGACCTGGCTCGGCGCTTGAAGGTGGGCGTGCTGGAGCTAC
GGAGATGGAACCGTCACCTGTTTCCGACGGGGGAGCCGGTCAAGAGCTTA
CCTCCGGGTACGCTGGTGCGGATCTTTGCGGCCGGGCATGAGGGATGGAG
GGGGGGAGGAAGATGACAAGTAGGAGGGAGGAGGGAGGGAGGGGGGAGGC
GCGAAGGGGGCATTGGACGCGGTCCGACTAGACAAGGGAGATATAATGGG
AGGCGGGAGACCTCGAAAGGGAGAGCTTTCTCCTAGGATCTTGGAGGGAG
GGACGCGGCCGATGTGAGCGATTCTTAGGGGGCCTTTGAGGGGCACAAAG
CATTAACTGATGGCCGAGCGAATCGAGCTATGGTCCCGCGGGAGTGTTTT
ATAAACATGCCGGTGTGAGGCTTTGATCATGTCATAGGGTATGACAGTGC
CTCGCGCATCACTTCCGTGGCCGTTGTTAATGGCTGCGGGTATAAAGAGG
GATGGCAAGGAACAAGGAGGAGGAGATGGCAACTCCTTCTATGAGACCAG
GCAACAAAGACTAAACGAAGAACGTAGATAGCCTCATTCCAGTGCATGGT
TCACGTGAGGGTCCATATGTAAGACGCAAATTTTCTCTGCCCTCTACC
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protein sequence of rna488

>rna488-protein ID=rna488-protein|Name=rna488|organism=Nannochloropsis gaditana|type=polypeptide|length=377bp
MIVSVLDTVQTAFLSSLLTIRCLLLADREGELCGVRLGSGRRPGEQLIVS
EIVSESVQEVCQIRKGDIVTHVNGAPVGASFLPARGARRRLPVDEEGDAG
LTQGWPMTCPSTQALGRAFSPGFEGEHQVPPLPSALPGRPKFRNCSPSVV
ELRLIRANSLPTTPPFSSSPSSPPSFPSSPASSSLLRPELPIFYYETHPR
DSLESIALLFQTTPEVIRRDNRGYFRAGERAEGTVPPGLLLKIRNPSFLG
GNGPGTEEKGREEEEEEADGAEGEVGVLVQSREGSPVLASGDLRSDSPSS
PLSLPTSPRTSCQSRYWEVGAGESVSDLARRLKVGVLELRRWNRHLFPTG
EPVKSLPPGTLVRIFAAGHEGWRGGGR
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mRNA from alignment at CM002455.1:1222063..1224267-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna488 ID=rna488|Name=rna488|organism=Nannochloropsis gaditana|type=mRNA|length=2205bp|location=Sequence derived from alignment at CM002455.1:1222063..1224267- (Nannochloropsis gaditana)
TTGAGGGCTCTTTTTGCGGTGTGCACGTCTCACCCACGATCTTCCTCTTT
CTAACTTTATGATCGGCCAATGCGTTGCTGTGCGGACGTTCTATCGAGGT
TTCTCATCACGATTTTCTCTGTCCGTTCTAAGAACAGTTGGAAAAGTGGC
GTCCTCCTTATCATCTGTTCGGAGCTACGGTACTTTTTTACCTCTGCTGC
CGTCTTCATGGGAGGAGGACCCCATTACTAGCACTCCATCGAGCTTGACT
TCGTCGAGGACGGCCAATGGCCTGGTATTCCCCGTCTTGTACAGGTTCGT
GGTGTCATGGTGTCGAACACGACGATGAGTGAAAGGGATTAGGCGGCATT
TATGCTGGGGATCCGTCCATACGGCGCATTTGTGAGAATATCTCGTGAGC
TCCACCGCGTTAGCTTTTCAGTTGATGGTATACATATGTCTTGGGTGGAG
CGCTTGGTACATTTGTACTCTCGTGTTTTGTAATCGGCAACTTGTTCGCT
TCATTGCCACCGGTGGGGTGCAGAACGCAGCTTGATTTCTTTTTTGTAGT
CCAAAAAGGCCTGCAAGCTCACGCCTCGATGGCGGATGAATGATTGTTTC
AGTCCTTGACACCGTGCAAACCGCTTTCTTGTCGTCCCTCCTTACCATCA
GGTGCCTACTCCTTGCGGATAGAGAGGGTGAGCTCTGCGGCGTAAGGCTG
GGTTCCGGCAGGCGGCCCGGAGAGCAACTAATCGTCTCCGAGATCGTCAG
CGAGAGCGTGCAGGAGGTGTGTCAGATACGGAAGGGGGACATCGTCACCC
ATGTCAACGGGGCACCCGTGGGCGCCTCCTTCCTTCCCGCACGGGGAGCC
CGACGCCGCCTGCCCGTGGATGAAGAGGGGGATGCCGGGCTTACACAGGG
ATGGCCCATGACATGCCCGTCTACGCAAGCATTGGGAAGGGCTTTCTCAC
CTGGTTTCGAGGGCGAGCACCAGGTCCCGCCACTCCCTTCGGCGCTACCA
GGGCGACCCAAGTTCCGAAACTGCTCTCCTTCTGTCGTCGAGCTCCGGCT
GATACGGGCCAACAGCCTGCCAACCACTCCCCCTTTCTCCTCCTCGCCTT
CCTCCCCTCCCTCATTTCCGTCCTCGCCAGCTTCGTCCTCCCTTCTCCGC
CCGGAGCTTCCCATTTTTTACTACGAGACCCATCCCCGCGACAGCTTGGA
GAGCATCGCGCTGCTGTTTCAGACCACGCCCGAGGTCATTCGCAGGGATA
ACCGGGGCTATTTTCGCGCGGGGGAGCGAGCAGAGGGGACGGTCCCGCCC
GGATTGCTTTTGAAGATTCGGAACCCCTCCTTCCTGGGCGGCAACGGACC
GGGGACAGAGGAGAAAGGGCGCGAAGAAGAGGAGGAAGAGGCGGACGGGG
CGGAAGGGGAAGTTGGCGTGCTTGTCCAATCGAGGGAGGGCTCACCCGTA
CTGGCCTCTGGTGACCTGCGGAGCGACAGCCCCTCTTCCCCCCTTTCCCT
CCCAACCTCCCCCCGCACGTCGTGCCAGAGCCGGTACTGGGAGGTGGGGG
CCGGGGAGTCGGTCTCGGACCTGGCTCGGCGCTTGAAGGTGGGCGTGCTG
GAGCTACGGAGATGGAACCGTCACCTGTTTCCGACGGGGGAGCCGGTCAA
GAGCTTACCTCCGGGTACGCTGGTGCGGATCTTTGCGGCCGGGCATGAGG
GATGGAGGGGGGGAGGAAGATGACAAGTAGGAGGGAGGAGGGAGGGAGGG
GGGAGGCGCGAAGGGGGCATTGGACGCGGTCCGACTAGACAAGGGAGATA
TAATGGGAGGCGGGAGACCTCGAAAGGGAGAGCTTTCTCCTAGGATCTTG
GAGGGAGGGACGCGGCCGATGTGAGCGATTCTTAGGGGGCCTTTGAGGGG
CACAAAGCATTAACTGATGGCCGAGCGAATCGAGCTATGGTCCCGCGGGA
GTGTTTTATAAACATGCCGGTGTGAGGCTTTGATCATGTCATAGGGTATG
ACAGTGCCTCGCGCATCACTTCCGTGGCCGTTGTTAATGGCTGCGGGTAT
AAAGAGGGATGGCAAGGAACAAGGAGGAGGAGATGGCAACTCCTTCTATG
AGACCAGGCAACAAAGACTAAACGAAGAACGTAGATAGCCTCATTCCAGT
GCATGGTTCACGTGAGGGTCCATATGTAAGACGCAAATTTTCTCTGCCCT
CTACC
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Coding sequence (CDS) from alignment at CM002455.1:1222063..1224267-

>rna488 ID=rna488|Name=rna488|organism=Nannochloropsis gaditana|type=CDS|length=1134bp|location=Sequence derived from alignment at CM002455.1:1222063..1224267- (Nannochloropsis gaditana)
ATGATTGTTTCAGTCCTTGACACCGTGCAAACCGCTTTCTTGTCGTCCCT
CCTTACCATCAGGTGCCTACTCCTTGCGGATAGAGAGGGTGAGCTCTGCG
GCGTAAGGCTGGGTTCCGGCAGGCGGCCCGGAGAGCAACTAATCGTCTCC
GAGATCGTCAGCGAGAGCGTGCAGGAGGTGTGTCAGATACGGAAGGGGGA
CATCGTCACCCATGTCAACGGGGCACCCGTGGGCGCCTCCTTCCTTCCCG
CACGGGGAGCCCGACGCCGCCTGCCCGTGGATGAAGAGGGGGATGCCGGG
CTTACACAGGGATGGCCCATGACATGCCCGTCTACGCAAGCATTGGGAAG
GGCTTTCTCACCTGGTTTCGAGGGCGAGCACCAGGTCCCGCCACTCCCTT
CGGCGCTACCAGGGCGACCCAAGTTCCGAAACTGCTCTCCTTCTGTCGTC
GAGCTCCGGCTGATACGGGCCAACAGCCTGCCAACCACTCCCCCTTTCTC
CTCCTCGCCTTCCTCCCCTCCCTCATTTCCGTCCTCGCCAGCTTCGTCCT
CCCTTCTCCGCCCGGAGCTTCCCATTTTTTACTACGAGACCCATCCCCGC
GACAGCTTGGAGAGCATCGCGCTGCTGTTTCAGACCACGCCCGAGGTCAT
TCGCAGGGATAACCGGGGCTATTTTCGCGCGGGGGAGCGAGCAGAGGGGA
CGGTCCCGCCCGGATTGCTTTTGAAGATTCGGAACCCCTCCTTCCTGGGC
GGCAACGGACCGGGGACAGAGGAGAAAGGGCGCGAAGAAGAGGAGGAAGA
GGCGGACGGGGCGGAAGGGGAAGTTGGCGTGCTTGTCCAATCGAGGGAGG
GCTCACCCGTACTGGCCTCTGGTGACCTGCGGAGCGACAGCCCCTCTTCC
CCCCTTTCCCTCCCAACCTCCCCCCGCACGTCGTGCCAGAGCCGGTACTG
GGAGGTGGGGGCCGGGGAGTCGGTCTCGGACCTGGCTCGGCGCTTGAAGG
TGGGCGTGCTGGAGCTACGGAGATGGAACCGTCACCTGTTTCCGACGGGG
GAGCCGGTCAAGAGCTTACCTCCGGGTACGCTGGTGCGGATCTTTGCGGC
CGGGCATGAGGGATGGAGGGGGGGAGGAAGATGA
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Synonyms
Publications