rna4868, rna4868 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4868
Unique Name	rna4868
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1698
Alignment location	CM002464.1:542865..544568 +

Link to JBrowse

Properties


Property Name	Value
Product	u3 snornp-associated protein utp7
Orig transcript id	gnl\|cribi\|Naga_100021g43.8750.mrna
Orig protein id	gnl\|cribi\|Naga_100021g43.8750
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:542865..544568 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g43	gene4702	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4868	rna4868-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25807.1	cds4856	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:542865..544568+
coding sequence from alignment at CM002464.1:542865..544568+

mRNA sequence

>rna4868 ID=rna4868|Name=rna4868|organism=Nannochloropsis gaditana|type=mRNA|length=1698bp
ATGAAACAATTACCTTTGCCCTCGCTGCAGATATTTCGGCAACTTGTTGA
TCACGGACCAAAAATCGCCACCACTTCGTCTAAAGGCGGGTTTAATCTTA
CGTATTCCGAAATATTGCAAGAATCGGCACTGATCGCAGCCCGTCTGGGA
AGAACAGTCATTTCGTCGCCATCCACGAGTCCTTCTACATTCCGACCAAT
TGCTCTGCTAGCTCCACAAGATCACACCTTCTGTCTTGGATTTATGGGTG
TCCTGCAAGCCGGAGGTGCTGTTGTACCAATCTACTCGCGCAGTCCACAG
CGTGAGATTGAATTTATCTTGCAAGATTCTGGTTGCGCCCAGGTATTATT
GCATCCTGAATTTCGCTCCAATCTCACCCCCTTGCTCCGCGGATCGAAGG
GTCTTGACATTGAAGTTGTAGACCTGATTCCAGGCACAGATCAATCGGAC
CTCGAGAAGATAGCTGCGATGAGGATGGGAAAAGATAAGGCTGCCATGTT
GGGGCATCAATACAGTGAAATCGTGGAGTGGATTGAATCGTCAGAAAATG
CGGACGCTGTAGTCGTCTACACAAGTGGAACAACAGGCCGGCCGAAGGGT
GTTGTCAAAACCCATGCTCAGCTCGCAGAGATGTGCAAGGGTGTGGTGAA
GGCCTGGAACTACGCTCCTACCGACCGTGTCCTGGAGTTTCTCCCCCTCC
ACCATCTTCATGGATTACTGAACAAGTGTCTGGCAGTCTTGTGGGCTGGT
GGTGTTGTCGAGTTTCTTGGATCAGCCAACGCAAATGCCATCTGGGATCG
ATTGGCCGATCCTACAAAGCCGATGCTTTCCATGTTCCATGCAGTGCCCA
CCATTTATGCATTGATGCTCGAGGAGCTGGAATCGGGTCGAATGGACGAA
GCCTCCCAGAAGCGAGCCTTGCAGCATTTGCGCCAGATGCGCCTGATTGT
AAGCGGATCGGCTGCTCTTCCTCAGTGTCGCTTCTTGAAATGGGAGGCCT
TGACAGGTCATCGCATATTAGAGAGGTATGGTACAACAGAGGCGGGCATG
ATCCTCAGCAATCCGTTGACACCAGTCAGTTCTCGATTTCCTGGCCACGT
GGGTGCTCCTTTCCCGGGGGTGGATGTTCGACTAGTAGATCCGGAGACAG
AAGCGGATGTGACAAGGGAGCCGGGGAAGCAGGGAGAGGTGCGTGTCCGC
TCGGAACACGGCCTCTTCAGTCGCTATCACAACCGAAGTGAAGTCACACG
CAAGGCCTTCGACGAGGATAATTGGTACAAGACGGGGGATTTGGGCAAAT
ATGACCCTGAGAAAGGGTTTAAAATTGTGGGTCGCTTGTCTGCTGATATA
CTCAATTCTGGAGGTTACAAAATAAGTGCTCTAGAAATTGAGGCAGCAAT
TCAAGAGCACGAGCAAGTAGCTGAGGTTGTCGTGCTTGGAAGATGCCATT
CAAAGTGGGGTGACGAGGTGGTAGCAGTGGTAAGGATTAAAGAGACTGCC
ATGCGTAGCGCAAATGTAAGCGGAAACCCGCTTGAAAAGCGCACCGGACT
TTTAACCACTGAAGGTCTCCACGACTTTCTGGCCAGTCGTTTGGCTTCGC
ACATGTTACCTCGTACAATGTATATAGTCAATTTGATACCAAAAAATGCT
ATGGGCAAGGTTGATAAGAGAGTATTGCTTGAACAGCTAGGAAAATAA

protein sequence of rna4868

>rna4868-protein ID=rna4868-protein|Name=rna4868|organism=Nannochloropsis gaditana|type=polypeptide|length=567bp
MSPTNRKRGNDGSKSHSDASCKLDTTMGDPTEKQGKGKRPLVNTYQSAGT
PLERQRDEKSRVLYENGLGPSSIHKLTDKRLKSRLKRTEKRYREAALEAA
RFDMLLPHEAGYLEQEGLLDQSWKLTQRDMKRHVDLQTTNQFFHLDLPVL
GPYTLDWARNGRHLLLGGRQGHVAVIDSLRTDVTRELHLRTPVRDLAFLH
NEGMFAVAQKKYVYLYDNQGLELHCLRGHIDPNRLAFLPYHYLLASVGRA
GWLKYQDVSTGKLVAECNTRKGVCLAIRQNPFNAVLHLGHASGVVSLWSP
SMGQSLVSMLCHRGPVSGIAIDREGRYMASAGMDGEVKVWDLRLYKQLHH
YTFTTAPSSIDISQRGLLAVGFGCHVTVWKDALAQKAHSPYVRHDIPGNA
VDTLRFRPFEDVLGIGHKGGYVSMVVPGAGEPNFDSLEANPFQSRKQRRE
AEVHGLLDKLAPETITLDPRSIGAVDRQPDELMKEQRDMMGEADRRPVKP
KKEKNRMRGKNKLGKKLKRKQMNVVDEKTLILKQKLADARKVDKEKRAVE
SRSEQVDRAPRALKRFF

mRNA from alignment at CM002464.1:542865..544568+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4868 ID=rna4868|Name=rna4868|organism=Nannochloropsis gaditana|type=mRNA|length=1704bp|location=Sequence derived from alignment at CM002464.1:542865..544568+ (Nannochloropsis gaditana)
ATGAGTCCAACTAATCGAAAGAGAGGTAACGACGGCTCAAAATCGCATTC
AGACGCATCTTGCAAGCTGGACACGACGATGGGTGACCCGACTGAGAAGC
AAGGCAAGGGCAAGCGACCCCTAGTCAACACATACCAGTCAGCTGGAACG
CCGTTGGAGCGCCAAAGGGACGAGAAGTCACGAGTCTTGTACGAGAATGG
GTTGGGCCCCAGTTCAATCCATAAATTGACGGACAAGCGACTGAAAAGCA
GGCTAAAGAGAACTGAGAAGAGATACCGAGAAGCAGCCTTAGAGGCTGCG
CGTTTTGATATGCTCTTGCCACATGAGGCAGGTTACCTGGAGCAAGAGGG
CCTCTTGGACCAATCTTGGAAGTTGACGCAACGCGATATGAAGCGCCACG
TGGATTTGCAGACCACAAATCAGTTTTTCCACCTTGATTTGCCGGTTTTG
GGGCCTTACACGCTGGACTGGGCACGCAATGGTCGACACCTTTTGTTGGG
CGGACGCCAGGGACATGTTGCGGTAATCGACTCCCTACGCACGGATGTGA
CACGCGAGCTTCATTTGCGGACACCCGTACGAGACTTGGCTTTTCTGCAC
AATGAAGGCATGTTTGCTGTGGCCCAAAAGAAGTACGTGTATCTTTACGA
TAATCAAGGACTGGAGCTACACTGTCTGCGGGGCCACATTGACCCAAACC
GCCTTGCATTTTTGCCCTACCATTATTTGCTTGCCTCCGTGGGACGAGCT
GGTTGGCTAAAATACCAAGATGTATCCACAGGAAAATTGGTGGCAGAGTG
TAACACCAGAAAGGGCGTCTGTCTGGCTATCAGGCAAAACCCTTTCAACG
CCGTCCTGCATCTTGGCCACGCCTCAGGGGTTGTGTCTTTATGGAGCCCC
AGCATGGGACAGTCCCTTGTTTCCATGCTTTGCCACCGCGGTCCTGTCTC
AGGCATAGCAATCGATCGCGAAGGACGCTACATGGCGTCGGCTGGGATGg
atggggaggtgaaggtcTGGGACCTTCGCCTCTACAAGCAGCTACACCAC
TACACTTTTACTACCGCTCCCTCCAGTATAGATATCAGTCAACGAGGCTT
ACTTGCTGTAGGATTTGGCTGCCATGTGACCGTTTGGAAAGATGCTCTTG
CGCAAAAGGCGCATTCGCCTTACGTCCGTCACGACATCCCGGGGAACGCG
GTGGACACGCTGCGTTTCAGGCCTTTTGAGGACGTACTTGGCATCGGGCA
CAAGGGCGGATACGTCTCCATGGTTGTaccgggggcgggagagcccAACT
TTGATAGCTTAGAGGCGAACCCATTCCAGTCGCGGAAGCAGCGTCGAGAG
GCGGAAGTACACGGCCTGCTGGACAAGTTGGCGCCGGAAACGATCACGTT
AGACCCTCGCAGTATCGGGGCCGTGGATCGGCAGCCCGACGAGTTGATGA
AGGAGCAGCGGGATATGATGGGAGAAGCAGACCGACGTCCTGTTAAGCcc
aaaaaggagaaaaaccGAATGCGGGGCAAAAATAAGCTCGGCAAAAAGTT
GAAACGAAAGCAGATGAAcgtggtggacgagaagaCTTTAATTTTGAAAC
AGAAATTGGCTGATGCCCGGAAGGTAGATaaagaaaagagagcggTCGAA
AGTCGCAGCGAGCAAGTCGACCGGGCACCGCGTGCTCTCAAGCGTTTTTT
CTAA

Coding sequence (CDS) from alignment at CM002464.1:542865..544568+

>rna4868 ID=rna4868|Name=rna4868|organism=Nannochloropsis gaditana|type=CDS|length=1704bp|location=Sequence derived from alignment at CM002464.1:542865..544568+ (Nannochloropsis gaditana)
ATGAGTCCAACTAATCGAAAGAGAGGTAACGACGGCTCAAAATCGCATTC
AGACGCATCTTGCAAGCTGGACACGACGATGGGTGACCCGACTGAGAAGC
AAGGCAAGGGCAAGCGACCCCTAGTCAACACATACCAGTCAGCTGGAACG
CCGTTGGAGCGCCAAAGGGACGAGAAGTCACGAGTCTTGTACGAGAATGG
GTTGGGCCCCAGTTCAATCCATAAATTGACGGACAAGCGACTGAAAAGCA
GGCTAAAGAGAACTGAGAAGAGATACCGAGAAGCAGCCTTAGAGGCTGCG
CGTTTTGATATGCTCTTGCCACATGAGGCAGGTTACCTGGAGCAAGAGGG
CCTCTTGGACCAATCTTGGAAGTTGACGCAACGCGATATGAAGCGCCACG
TGGATTTGCAGACCACAAATCAGTTTTTCCACCTTGATTTGCCGGTTTTG
GGGCCTTACACGCTGGACTGGGCACGCAATGGTCGACACCTTTTGTTGGG
CGGACGCCAGGGACATGTTGCGGTAATCGACTCCCTACGCACGGATGTGA
CACGCGAGCTTCATTTGCGGACACCCGTACGAGACTTGGCTTTTCTGCAC
AATGAAGGCATGTTTGCTGTGGCCCAAAAGAAGTACGTGTATCTTTACGA
TAATCAAGGACTGGAGCTACACTGTCTGCGGGGCCACATTGACCCAAACC
GCCTTGCATTTTTGCCCTACCATTATTTGCTTGCCTCCGTGGGACGAGCT
GGTTGGCTAAAATACCAAGATGTATCCACAGGAAAATTGGTGGCAGAGTG
TAACACCAGAAAGGGCGTCTGTCTGGCTATCAGGCAAAACCCTTTCAACG
CCGTCCTGCATCTTGGCCACGCCTCAGGGGTTGTGTCTTTATGGAGCCCC
AGCATGGGACAGTCCCTTGTTTCCATGCTTTGCCACCGCGGTCCTGTCTC
AGGCATAGCAATCGATCGCGAAGGACGCTACATGGCGTCGGCTGGGATGg
atggggaggtgaaggtcTGGGACCTTCGCCTCTACAAGCAGCTACACCAC
TACACTTTTACTACCGCTCCCTCCAGTATAGATATCAGTCAACGAGGCTT
ACTTGCTGTAGGATTTGGCTGCCATGTGACCGTTTGGAAAGATGCTCTTG
CGCAAAAGGCGCATTCGCCTTACGTCCGTCACGACATCCCGGGGAACGCG
GTGGACACGCTGCGTTTCAGGCCTTTTGAGGACGTACTTGGCATCGGGCA
CAAGGGCGGATACGTCTCCATGGTTGTaccgggggcgggagagcccAACT
TTGATAGCTTAGAGGCGAACCCATTCCAGTCGCGGAAGCAGCGTCGAGAG
GCGGAAGTACACGGCCTGCTGGACAAGTTGGCGCCGGAAACGATCACGTT
AGACCCTCGCAGTATCGGGGCCGTGGATCGGCAGCCCGACGAGTTGATGA
AGGAGCAGCGGGATATGATGGGAGAAGCAGACCGACGTCCTGTTAAGCcc
aaaaaggagaaaaaccGAATGCGGGGCAAAAATAAGCTCGGCAAAAAGTT
GAAACGAAAGCAGATGAAcgtggtggacgagaagaCTTTAATTTTGAAAC
AGAAATTGGCTGATGCCCGGAAGGTAGATaaagaaaagagagcggTCGAA
AGTCGCAGCGAGCAAGTCGACCGGGCACCGCGTGCTCTCAAGCGTTTTTT
CTAA

Synonyms

Publications