rna4865, rna4865 (mRNA) Nannochloropsis gaditana

Overview
Namerna4865
Unique Namerna4865
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2837
Alignment locationCM002464.1:536583..536943 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100021g39.8782.mrna
Orig protein idgnl|cribi|Naga_100021g39.8782
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:536583..536943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100021g39gene4699Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4865rna4865-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25839.1cds4853Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4865 ID=rna4865|Name=rna4865|organism=Nannochloropsis gaditana|type=mRNA|length=2837bp
TCCAGATGCATTCTTCTGTTGTTGCGTGCTCAAAAGTTCGCAACTTTCGG
TTTGACTTTGTTGTGGCTGAGACCCTCATCCCGTATGTTGCGCACCGAAG
GTCCCACGCATTTAAACCACCTTCCGTCTATGGGCCTACTTTTGGCGTTA
GCACATAACATCTACCTGGCTTTGAAATCAAACATATGGTTCGCTTGAGA
TGCATCTTCCGAGTCATTGAATTCAGCCAGAAACGCATACTATTAAAGCT
CAGTGGTGGATTCATCCCTTGAATGTTCGCTCATTTATTCTTACCTCACC
AGCGTTGTCTCACAGTCTGAAAGGAATGAAAACCAGCCGTGTGGCAGCTC
CATCAGGGGCAGGGGGCAAGGCGTCCTCATCTCTGAAGCATAACTCCTCT
CAATTGTCTACGAAGACGAAGCCGCAATCTCAACGCTACGATTACCTTCT
TATTTGCAGCTTTGTTTGCGCAGCGCTGGTTGCTCTTCTTGCTTACATGT
ATTCCCCAGCGAAGATGGTGCGAACTACTCAGGACTTCATGAGAAGCCTT
TTCCGCAAGGGTATCGAGTTTTCGGTCTCTACTGATAGGCACACTGGAAA
AAGTATGAAACCCTTCCGGCGAGTACTTGCGGACGCGAACCCCTCGGAAG
ATGTGGCCCGGCCGACGGCTCGCCTGCTTGGCCATGGCCCCACCTTGGAG
GACCTCAAGAGTGCGCCCTTTCGACCTCACGTCCTTACTGACTCCATCAA
TCCGCCCGTGACTCCGCACCACGAAGCCGATGTTTTGGGACTTTTCTTGT
ACAAGAATGGAGACTCCTCAAATCCTATTAACGTTGTCGTCCCGCGGGAT
CGGCTCTGCCGCTCCCCTCTCACTCTTGCTGCGACTCTGGGCGCCGAAGT
CGACAAGGAGTGGGGCTGCGAGGGGCGAAGCAGCTGCCGAGTCTTTCTGC
ACAATGGCTGGGAGGTCTCTAACTGCGACGAACTTGTGGACGATGATAAG
TTATGGTTGGTCCCCCGACACCGGGAGTTCATCTGGCCCACGTTCAAGCG
GGGTCATCAGGTGGAAGTCAGGCACGTGGCTTCCGGCAACGGGGAGCCCA
TTATCGTCGAGACACTCTCCGAGTCCCCCAAGGTTTTCCGTCTGAACAAC
TTTTTCACGTCTCAGGAGGCTGACGAGCTTATCGCTCACACTCTGAACCT
GAAGGACCCAGTAAACGGACTTCATCGCTCCACAACAGGACAGGGGGCGT
CTGCGCAAGAAGATAGTCACCGCACGAGTGAAAATGCCTGGGACTTAAAT
TCCCCGGCATCGCTTCGTTTGAAACGACGCATTTTTGACCTTTTGGGCAT
TAGACCCTACAAAAACGCATGGGCAGACGGCTTGCAAATTCTACGTTACA
ACCTGACCAAGGCTTACAACAGTCACTTTGACTATCTGGAGCATCCAAAG
GGCTCTCGCATGGACTCGGCCCGGCCTGGTGGTTCCAATCGTTTCGCCAC
CGTCGTCGTTTATTTGACAGACGTGGCCGCGGGGGGAGAGACAGTCTTTC
CGGCAGGTAAAGCATTGGACGGCACGGACAAGAGCTATGGCGAGGCTCTG
AAAGAGATGGAAAGCCAAGACATTGACTTGCGTGCCATCGGAATCAAGCC
TGGCTCCTGGCAGGAACGTTTGGTTGTCGAGTGTCGCAGTAAACTAGCTG
TCAGGCCTGTGAAGGCGCAGGCAGTTCTCTTCTACAATCAGCTACCAGAG
GGTGGTCAGGACAACGCCTCGCTGCATGGAGGCTGCCCAGTGTTGGAGGG
CGTCAAGTGGGCTGCAAATCTATGGGTTTGGAACGGAAATGTTCACGGGG
ACGAACATACAAGCCAAGTCGAGGAAGAGGACGACGGGAGCCTCACAGTC
AACTTTCTGAGCACGAATAAAGGCTATAGCTTATACTGGGAGGACACTTT
CTTTGCAGCCTTGCAGCCAGGGGTCCCCAAGAGCATGAATACCTTCGACG
GTCATACCTTCCACATCTTCGAAGGCACCACTGAAAAGGAAAAAGGCAAG
CTTGTTGCCACGTACGTCATGAAGAAACGCGCCAATCGTAAAGATATACC
GACATACAGATTCTCTCCCACTGACAACTCAGAGGATAACGAAGATTTTA
CAGACGATGAAGACGACGAATGGGACAGCGAAGAAATGTCAGATGATGAC
GATTTTTCACCGGAGGAGGGGACGGATGAGCTTTGAAGATGCGCGAAGAC
TTGCCAGAAACGTGCTCCAAGCACGATTGCAAAATTCCGACCCTTAAGGA
CGGAAACGCTGTTCTCCCCGTGCATCTTGCCGTCATCGAGGAGGGGAAAT
TGTCCCTGAAGATACGGACTTTGAAAGCAATCAAGATCGACTCAAACGGC
GAATGATATCATCCAGGATATAATTTTCTTCGAGTTCATTCAAGTTTTTG
AGGATCGTATACTTCAATCCATACTCAGTATTTTGTGGCTGAGATAATTC
TCAAATATCCTTTCGTCACGTACCAAAGATTTCGCAGGTTGATTCAATCT
CTTTCAAGTTGATAGGATTGCGATATTCGAGAGGAGATTAGTGATATTTC
AAACGATCTATCGAGAGGTGACCGCGTACCTCTATACACGATTTTCGGAC
ACCTAGAAAACGGCCTCTCTATGGTGAGCTTTTGGAGTTTACCATGGGCG
TGTATCCAACAGATATGTATCGAAAAAATTTACTTCCAAAGGTCTCAGCC
ACGGGTGGATTTAATATTCTTTCAGCTATTTCCGGCCCGTTTGTGTACCG
GAATTGTGCTAGAGAAGGAAACATACGTACCTTGCGT
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protein sequence of rna4865

>rna4865-protein ID=rna4865-protein|Name=rna4865|organism=Nannochloropsis gaditana|type=polypeptide|length=72bp
MFPSLAQFRYTNGPEIAERILNPPVAETFGSKFFRYISVGYTPMRLNQPA
KSLVRDERIFENYLSHKILSMD
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mRNA from alignment at CM002464.1:536583..536943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4865 ID=rna4865|Name=rna4865|organism=Nannochloropsis gaditana|type=mRNA|length=361bp|location=Sequence derived from alignment at CM002464.1:536583..536943- (Nannochloropsis gaditana)
ATGTTTCCTTCTCTAGCACAATTCCGGTACACAAACGGGCCGGAAATAGC
TGAAAGAATATTAAATCCACCCGTGGCTGAGACCTTTGGAAGTAAATTTT
TTCGATACATATCTGTTGGATACACGCCCATGGTAAACTCCAAAAGCTCA
CCATAGAGAGGCCGTTTTCTAGGTGTCCGAAAATCGTGTATAGAGGTACG
CGGTCACCTCTCGATAGATCGTTTGAAATATCACTAATCTCCTCTCGAAT
ATCGCAATCCTATCAACTTGAAAGAGATTGAATCAACCTGCGAAATCTTT
GGTACGTGACGAAAGGATATTTGAGAATTATCTCAGCCACAAAATACTGA
GTATGGATTGA
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Coding sequence (CDS) from alignment at CM002464.1:536583..536943-

>rna4865 ID=rna4865|Name=rna4865|organism=Nannochloropsis gaditana|type=CDS|length=438bp|location=Sequence derived from alignment at CM002464.1:536583..536943- (Nannochloropsis gaditana)
AGATTGAATCAACCTGCGAAATCTTTGGTACGTGACGAAAGGATATTTGA
GAATTATCTCAGCCACAAAATACTGAGTATGGATTGAATGTTTCCTTCTC
TAGCACAATTCCGGTACACAAACGGGCCGGAAATAGCTGAAAGAATATTA
AATCCACCCGTGGCTGAGACCTTTGGAAGTAAATTTTTTCGATACATATC
TGTTGGATACACGCCCATGAGATTGAATCAACCTGCGAAATCTTTGGTAC
GTGACGAAAGGATATTTGAGAATTATCTCAGCCACAAAATACTGAGTATG
GATTGAATGTTTCCTTCTCTAGCACAATTCCGGTACACAAACGGGCCGGA
AATAGCTGAAAGAATATTAAATCCACCCGTGGCTGAGACCTTTGGAAGTA
AATTTTTTCGATACATATCTGTTGGATACACGCCCATG
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Synonyms
Publications