rna4864, rna4864 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4864
Unique Name	rna4864
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	996
Alignment location	CM002464.1:533984..536956 +

Link to JBrowse

Properties


Property Name	Value
Product	Prolyl 4-hydroxylase, alpha subunit
Orig transcript id	gnl\|cribi\|Naga_100021g38.8777.mrna
Orig protein id	gnl\|cribi\|Naga_100021g38.8777
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:533984..536956 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g38	gene4698	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4864	rna4864-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25834.1	cds4852	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:533984..536956+
coding sequence from alignment at CM002464.1:533984..536956+

mRNA sequence

>rna4864 ID=rna4864|Name=rna4864|organism=Nannochloropsis gaditana|type=mRNA|length=996bp
TGATTTTAAACCCTCCTCCCTCTTCCTCAACAGCTTATCGGTTTCCTCTT
GAAGAACAATGACAACAGGCACATTCAGTGTTTTTATTCAGCACACCTCG
GCTTCCCTTTCTATCAACGAGAATGCTGATCCTACTGTTCGCACGGACAT
GGAGAAAGCCTTAAATATGCTAGTCCCAGAGTCTTGGGCTACAGATGGCT
TGCTCGACCATGTGGATGAAGGCCCGGACGATATTACAGGCCATGTAAAG
TCGACTATCGTGGGAGCAAACCTGACGATTCCCGTCTCGAACGGCAGGCT
GGCGCTGGGCAACTGGCAAGGAATCTACCTGTGCGAGCACCGTAATGCCG
GTGGATTCGGCGGGGGTCACGCACGCCGCCTTGTCATCACGGTCCAGGGT
CTGCTCTCGTCATCAGCCCACAAAAAGTAGAGTTGGCCTGGTGGCCAGGA
TTTTGGATGCGATCTTTGTACCGCGTGACAGATCAATTGGCGGAGATGAT
TGCATTACTTCTCCAAAGTCGATCAATAAGCTTTGGTTATGTTGAGCAAA
AGTAATGTGAGGGATCGGAGGCTTGTGTCTGGCTGATCATATTCCATGGC
CTTCTTCAATTCGTCCATGCAAATGAAAGAAGAATGTAGCACAGTTACAG
CATACACGAGTCACGAAAATACATTTGCATAGTTCTTGAGGACCTTATAC
GTCTTTGCTCCTGTTGTGCGCGATGGTTTACACACTTAGACTGCTTATCA
ATTTATGTAGCCTTTCGATCATCATTGTCAAAGCGGCAATAAGAGCAGAT
AACTAATCGCAATAATGGCAGCCCCCTGCACTTGGTCAGCCCCGACGTCT
TCCCAATGTGTGGAGCCTGGGGGTACTAAGTCGATGAGCGATAATAATGA
TGCAGAGGATAAAGGACTTCGGCCAAAGTGACCATTCTTACAGGAACTAC
GAGGACACAAAAAAAATTAGAAGCATTTTAAAGCCGCATCTTAAGA

protein sequence of rna4864

>rna4864-protein ID=rna4864-protein|Name=rna4864|organism=Nannochloropsis gaditana|type=polypeptide|length=636bp
MKTSRVAAPSGAGGKASSSLKHNSSQLSTKTKPQSQRYDYLLICSFVCAA
LVALLAYMYSPAKMVRTTQDFMRSLFRKGIEFSVSTDRHTGKSMKPFRRV
LADANPSEDVARPTARLLGHGPTLEDLKSAPFRPHVLTDSINPPVTPHHE
ADVLGLFLYKNGDSSNPINVVVPRDRLCRSPLTLAATLGAEVDKEWGCEG
RSSCRVFLHNGWEVSNCDELVDDDKLWLVPRHREFIWPTFKRGHQVEVRH
VASGNGEPIIVETLSESPKVFRLNNFFTSQEADELIAHTLNLKDPVNGLH
RSTTGQGASAQEDSHRTSENAWDLNSPASLRLKRRIFDLLGIRPYKNAWA
DGLQILRYNLTKAYNSHFDYLEHPKGSRMDSARPGGSNRFATVVVYLTDV
AAGGETVFPAGKALDGTDKSYGEALKEMESQDIDLRAIGIKPGSWQERLV
VECRSKLAVRPVKAQAVLFYNQLPEGGQDNASLHGGCPVLEGVKWAANLW
VWNGNVHGDEHTSQVEEEDDGSLTVNFLSTNKGYSLYWEDTFFAALQPGV
PKSMNTFDGHTFHIFEGTTEKEKGKLVATYVMKKRANRKDIPTYRFSPTD
NSEDNEDFTDDEDDEWDSEEMSDDDDFSPEEGTDEL

mRNA from alignment at CM002464.1:533984..536956+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4864 ID=rna4864|Name=rna4864|organism=Nannochloropsis gaditana|type=mRNA|length=2973bp|location=Sequence derived from alignment at CM002464.1:533984..536956+ (Nannochloropsis gaditana)
TCCAGATGCATTCTTCTGTTGTTGCGTGCTCAAAAGTTCGCAACTTTCGG
TTTGACTTTGTTGTGGCTGAGACCCTCATCCCGTATGTTGCGCACCGAAG
GTCCCACGCATTTAAACCACCTTCCGTCTATGGGCCTACTTTTGGCGTTA
GCACATAACATCTACCTGGCTTTGAAATCAAACATATGGTTCGCTTGAGA
TGCATCTTCCGAGTCATTGAATTCAGCCAGAAACGCATACTATTAAAGCT
CAGTGGTGGATTCATCCCTTGAATGTTCGCTCATTTATTCTTACCTCACC
AGCGTTGTCTCACAGTCTGAAAGGAATGAAAACCAGCCGTGTGGCAGCTC
CatcaggggcagggggcaaGGCGTCCTCATCTCTGAAGCATAACTCCTCT
CAATTGTCTACGAAGACGAAGCCGCAATCTCAACGCTACGATTACCTTCT
TATTTGCAGCTTTGTTTGCGCAGCGCTGGTTGCTCTTCTTGGTGAGTACA
GTCGACCACTGCAGCGAGCAAAGAGGTCCGGGAAAGATCAGTTTAATGCT
AAAAATTAGACTTTTGGACGTTATGCTTAGAAGGAAAAGTGCTGAAACAC
GGTGCCAATCTCTCATCAAAATGACAGCTTACATGTATTCCCCAGCGAAG
ATGGTGCGAACTACTCAGGACTTCATGAGAAGCCTTTTCCGCAAGGGTAT
CGAGTTTTCGGTCTCTACTGATAGGCACACTGGAAAAAGTATGAAACCCT
TCCGGCGAGTACTTGCGGACGCGAACCCCTCGGAAGATGTGGCCCGGCCG
ACGGCTCGCCTGCTTGGCCATGGCCCCACCTTGGAGGACCTCAAGAGTGC
GCCCTTTCGACCTCACGTCCTTACTGACTCCATCAATCCGCCCGTGACTC
CGCACCACGAAGCCGATGTTTTGGGACTTTTCTTGTACAAGAATGGAGAC
TCCTCAAATCCTATTAACGTTGTCGTCCCGCGGGATCGGCTCTGCCGCTC
CCCTCTCACTCTTGCTGCGACTCTGGGCGCCGAAGTCGACAAGGAGTGGG
GCTGCGAGGGGCGAAGCAGCTGCCGAGTCTTTCTGCACAATGGCTGGGAG
GTCTCTAACTGCGACGAACTTGTGGACGATGATAAGTTATGGTTGGTCCC
CCGACACCGGGAGTTCATCTGGCCCACGTTCAAGCGGGGTCATCAGGTGG
AAGTCAGGCACGTGGCTTCCGGCAACGGGGAGCCCATTATCGTCGAGACA
CTCTCCGAGTCCCCCAAGGTTTTCCGTCTGAACAACTTTTTCACGTCTCA
GGAGGCTGACGAGCTTATCGCTCACACTCTGAACCTGAAGGACCCAGTAA
ACGGACTTCATCGCTCCACAACAGGACAGGGGGCGTCTGCGCAAGAAGAT
AGTCACCGCACGAGTGAAAATGCCTGGGACTTAAATTCCCCGGCATCGCT
TCGTTTGAAACGACGCATTTTTGACCTTTTGGGCATTAGACCCTACAAAA
ACGCATGGGCAGACGGCTTGCAAATTCTACGTTACAACCTGACCAAGGCT
TACAACAGTCACTTTGACTATCTGGAGCATCCAAAGGGCTCTCGCATGGA
CTCGGCCCGGCCTGGTGGTTCCAATCGTTTCGCCACCGTCGTCGTTTATT
TGACAGACGTGGCCGCGGGGGGAGAGACAGTCTTTCCGGCAGGTAAAGCA
TTGGACGGCACGGACAAGAGCTATGGCGAGGCTCTGAAAGAGATGGAAAG
CCAAGACATTGACTTGCGTGCCATCGGAATCAAGCCTGGCTCCTGGCAGG
AACGTTTGGTTGTCGAGTGTCGCAGTAAACTAGCTGTCAGGCCTGTGAAG
GCGCAGGCAGTTCTCTTCTACAATCAGCTACCAGAGGGTGGTCAGGACAA
CGCCTCGCTGCATGGAGGCTGCCCAGTGTTGGAGGGCGTCAAGTGGGCTG
CAAATCTATGGGTTTGGAACGGAAATGTTCACGGGGACGAACATACAAGC
CaagtcgaggaagaggacgacgggagccTCACAGTCAACTTTCTGAGCAC
GAATAAAGGCTATAGCTTATACTGGGAGGACACTTTCTTTGCAGCCTTGC
AGCCAGGGGTCCCCAAGAGCATGAATACCTTCGACGGTCATACCTTCCAC
ATCTTCGAAGGCACCactgaaaaggaaaaaggcaaGCTTGTTGCCACGTA
CGTCATGAAGAAACGCGCCAATCGTAAAGATATACCGACATACAGATTCT
CTCCCACTGACAACTCAGAGGATAACGAAGATTTTACAGACGATGAAGAC
GACGAATGGGACAGCGAAGAAATGTCAGATGATGACGATTTTTcaccgga
ggaggggacggatgAGCTTTGAAGATGCGCGAAGACTTGCCAGAAACGTG
CTCCAAGCACGATTGCAAAATTCCGACCCTTAAGGACGGAAACGCTGTTC
TCCCCGTGCATCTTGCCGTcatcgaggaggggaaattgTCCCTGAAGATA
CGGACTTTGAAAGCAATCAAGATCGACTCAAACGGCGAATGATATCATCC
AGGATATAATTTTCTTCGAGTTCATTCAAGTTTTTGAGGATCGTATACTT
CAATCCATACTCAGTATTTTGTGGCTGAGATAATTCTCAAATATCCTTTC
GTCACGTACCAAAGATTTCGCAGGTTGATTCAATCTCTTTCAAGTTGATA
GGATTGCGATATTCGAGAGGAGATTAGTGATATTTCAAACGATCTATCGA
GAGGTGACCGCGTACCTCTATACACGATTTTCGGACACCTAGAAAACGGC
CTCTCTATGGTGAGCTTTTGGAGTTTACCATGGGCGTGTATCCAACAGAT
ATGTATCGAAAAAATTTACTTCCAAAGGTCTCAGCCACGGGTGGATTTAA
TATTCTTTCAGCTATTTCCGGCCCGTTTGTGTACCGGAATTGTGCTAGAG
AAGGAAACATACGTACCTTGCGT

Coding sequence (CDS) from alignment at CM002464.1:533984..536956+

>rna4864 ID=rna4864|Name=rna4864|organism=Nannochloropsis gaditana|type=CDS|length=3822bp|location=Sequence derived from alignment at CM002464.1:533984..536956+ (Nannochloropsis gaditana)
ATGAAAACCAGCCGTGTGGCAGCTCCatcaggggcagggggcaaGGCGTC
CTCATCTCTGAAGCATAACTCCTCTCAATTGTCTACGAAGACGAAGCCGC
AATCTCAACGCTACGATTACCTTCTTATTTGCAGCTTTGTTTGCGCAGCG
CTGGTTGCTCTTCTTGCTTACATGTATTCCCCAGCGAAGATGGTGCGAAC
TACTCAGGACTTCATGAGAAGCCTTTTCCGCAAGGGTATCGAGTTTTCGG
TCTCTACTGATAGGCACACTGGAAAAAGTATGAAACCCTTCCGGCGAGTA
CTTGCGGACGCGAACCCCTCGGAAGATGTGGCCCGGCCGACGGCTCGCCT
GCTTGGCCATGGCCCCACCTTGGAGGACCTCAAGAGTGCGCCCTTTCGAC
CTCACGTCCTTACTGACTCCATCAATCCGCCCGTGACTCCGCACCACGAA
GCCGATGTTTTGGGACTTTTCTTGTACAAGAATGGAGACTCCTCAAATCC
TATTAACGTTGTCGTCCCGCGGGATCGGCTCTGCCGCTCCCCTCTCACTC
TTGCTGCGACTCTGGGCGCCGAAGTCGACAAGGAGTGGGGCTGCGAGGGG
CGAAGCAGCTGCCGAGTCTTTCTGCACAATGGCTGGGAGGTCTCTAACTG
CGACGAACTTGTGGACGATGATAAGTTATGGTTGGTCCCCCGACACCGGG
AGTTCATCTGGCCCACGTTCAAGCGGGGTCATCAGGTGGAAGTCAGGCAC
GTGGCTTCCGGCAACGGGGAGCCCATTATCGTCGAGACACTCTCCGAGTC
CCCCAAGGTTTTCCGTCTGAACAACTTTTTCACGTCTCAGGAGGCTGACG
AGCTTATCGCTCACACTCTGAACCTGAAGGACCCAGTAAACGGACTTCAT
CGCTCCACAACAGGACAGGGGGCGTCTGCGCAAGAAGATAGTCACCGCAC
GAGTGAAAATGCCTGGGACTTAAATTCCCCGGCATCGCTTCGTTTGAAAC
GACGCATTTTTGACCTTTTGGGCATTAGACCCTACAAAAACGCATGGGCA
GACGGCTTGCAAATTCTACGTTACAACCTGACCAAGGCTTACAACAGTCA
CTTTGACTATCTGGAGCATCCAAAGGGCTCTCGCATGGACTCGGCCCGGC
CTGGTGGTTCCAATCGTTTCGCCACCGTCGTCGTTTATTTGACAGACGTG
GCCGCGGGGGGAGAGACAGTCTTTCCGGCAGGTAAAGCATTGGACGGCAC
GGACAAGAGCTATGGCGAGGCTCTGAAAGAGATGGAAAGCCAAGACATTG
ACTTGCGTGCCATCGGAATCAAGCCTGGCTCCTGGCAGGAACGTTTGGTT
GTCGAGTGTCGCAGTAAACTAGCTGTCAGGCCTGTGAAGGCGCAGGCAGT
TCTCTTCTACAATCAGCTACCAGAGGGTGGTCAGGACAACGCCTCGCTGC
ATGGAGGCTGCCCAGTGTTGGAGGGCGTCAAGTGGGCTGCAAATCTATGG
GTTTGGAACGGAAATGTTCACGGGGACGAACATACAAGCCaagtcgagga
agaggacgacgggagccTCACAGTCAACTTTCTGAGCACGAATAAAGGCT
ATAGCTTATACTGGGAGGACACTTTCTTTGCAGCCTTGCAGCCAGGGGTC
CCCAAGAGCATGAATACCTTCGACGGTCATACCTTCCACATCTTCGAAGG
CACCactgaaaaggaaaaaggcaaGCTTGTTGCCACGTACGTCATGAAGA
AACGCGCCAATCGTAAAGATATACCGACATACAGATTCTCTCCCACTGAC
AACTCAGAGGATAACGAAGATTTTACAGACGATGAAGACGACGAATGGGA
CAGCGAAGAAATGTCAGATGATGACGATTTTTcaccggaggaggggacgg
atgAGCTTTGAATGAAAACCAGCCGTGTGGCAGCTCCatcaggggcaggg
ggcaaGGCGTCCTCATCTCTGAAGCATAACTCCTCTCAATTGTCTACGAA
GACGAAGCCGCAATCTCAACGCTACGATTACCTTCTTATTTGCAGCTTTG
TTTGCGCAGCGCTGGTTGCTCTTCTTGCTTACATGTATTCCCCAGCGAAG
ATGGTGCGAACTACTCAGGACTTCATGAGAAGCCTTTTCCGCAAGGGTAT
CGAGTTTTCGGTCTCTACTGATAGGCACACTGGAAAAAGTATGAAACCCT
TCCGGCGAGTACTTGCGGACGCGAACCCCTCGGAAGATGTGGCCCGGCCG
ACGGCTCGCCTGCTTGGCCATGGCCCCACCTTGGAGGACCTCAAGAGTGC
GCCCTTTCGACCTCACGTCCTTACTGACTCCATCAATCCGCCCGTGACTC
CGCACCACGAAGCCGATGTTTTGGGACTTTTCTTGTACAAGAATGGAGAC
TCCTCAAATCCTATTAACGTTGTCGTCCCGCGGGATCGGCTCTGCCGCTC
CCCTCTCACTCTTGCTGCGACTCTGGGCGCCGAAGTCGACAAGGAGTGGG
GCTGCGAGGGGCGAAGCAGCTGCCGAGTCTTTCTGCACAATGGCTGGGAG
GTCTCTAACTGCGACGAACTTGTGGACGATGATAAGTTATGGTTGGTCCC
CCGACACCGGGAGTTCATCTGGCCCACGTTCAAGCGGGGTCATCAGGTGG
AAGTCAGGCACGTGGCTTCCGGCAACGGGGAGCCCATTATCGTCGAGACA
CTCTCCGAGTCCCCCAAGGTTTTCCGTCTGAACAACTTTTTCACGTCTCA
GGAGGCTGACGAGCTTATCGCTCACACTCTGAACCTGAAGGACCCAGTAA
ACGGACTTCATCGCTCCACAACAGGACAGGGGGCGTCTGCGCAAGAAGAT
AGTCACCGCACGAGTGAAAATGCCTGGGACTTAAATTCCCCGGCATCGCT
TCGTTTGAAACGACGCATTTTTGACCTTTTGGGCATTAGACCCTACAAAA
ACGCATGGGCAGACGGCTTGCAAATTCTACGTTACAACCTGACCAAGGCT
TACAACAGTCACTTTGACTATCTGGAGCATCCAAAGGGCTCTCGCATGGA
CTCGGCCCGGCCTGGTGGTTCCAATCGTTTCGCCACCGTCGTCGTTTATT
TGACAGACGTGGCCGCGGGGGGAGAGACAGTCTTTCCGGCAGGTAAAGCA
TTGGACGGCACGGACAAGAGCTATGGCGAGGCTCTGAAAGAGATGGAAAG
CCAAGACATTGACTTGCGTGCCATCGGAATCAAGCCTGGCTCCTGGCAGG
AACGTTTGGTTGTCGAGTGTCGCAGTAAACTAGCTGTCAGGCCTGTGAAG
GCGCAGGCAGTTCTCTTCTACAATCAGCTACCAGAGGGTGGTCAGGACAA
CGCCTCGCTGCATGGAGGCTGCCCAGTGTTGGAGGGCGTCAAGTGGGCTG
CAAATCTATGGGTTTGGAACGGAAATGTTCACGGGGACGAACATACAAGC
CaagtcgaggaagaggacgacgggagccTCACAGTCAACTTTCTGAGCAC
GAATAAAGGCTATAGCTTATACTGGGAGGACACTTTCTTTGCAGCCTTGC
AGCCAGGGGTCCCCAAGAGCATGAATACCTTCGACGGTCATACCTTCCAC
ATCTTCGAAGGCACCactgaaaaggaaaaaggcaaGCTTGTTGCCACGTA
CGTCATGAAGAAACGCGCCAATCGTAAAGATATACCGACATACAGATTCT
CTCCCACTGACAACTCAGAGGATAACGAAGATTTTACAGACGATGAAGAC
GACGAATGGGACAGCGAAGAAATGTCAGATGATGACGATTTTTcaccgga
ggaggggacggatgAGCTTTGA

Synonyms

Publications