|
|
Properties
| Property Name | Value |
|---|
| Product | protein set isoform 2 |
| Orig transcript id | gnl|cribi|Naga_100090g8.8845.mrna |
| Orig protein id | gnl|cribi|Naga_100090g8.8845 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:1220639..1222322 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna486 ID=rna486|Name=rna486|organism=Nannochloropsis gaditana|type=mRNA|length=1564bp
TGCAAGACAAAATCAAATCATATAGCGCATCATCATATTATTATTTGAAA
ATATGATTCTTTTGCGCGGCTCGTGAGCTATTCAGGCGCTCAACACATAA
AACGTCTTTTAGAAGATACTTAAAAGATCTGGATCATGTGACTTTCTTGG
GCTTAAGATATCAGTATTAAATTATTTCTTCCTTCCTATTGTAGCCCTCA
CTTTCCCTGAGCACAGCCATCTTGAAGGAAGATGTCAACGAAACGTGGTG
GCGGAGCCGTTTCCTTATGCGAACTTATGAAAAAAAAGGTAGGGCGTGTC
TTCTATTTAGGCGTCGCTCAGTCACTCCGTACATCACATAAACGAGAATC
TCGTGTAGCTTCAGCTATCGATAATGTCGAAGTTGAAGGAACCTAAAATC
TGGATGGAAATGAAAAGGAATGAATTCAGTTGAGAGATCTCTCTGAAGCA
GATGCATAACTTGTCTAGTGTCTTGGTCGCATACAAACAGTCGTCTCGCA
AAAATAGCTCGGATGAAGCAAGCACTCCGGCGGAGACTATAAGTCGATCA
CACTCTCAACAAGGAAGCGAGGGTGAGGTGGAGCACGCGGTAAAAGCCAT
CGCTACGGTACAGTCTGAGCTTAATTCGTTGGAAGTATCCCAGACGCAGG
CTTTGACGGAGATCTTGAAGAAATACAAGGAATTGAAAAAGCCAGTTTAC
AGCAGGCGACAAGAGGCTATCAAGCAGGTCCCTGAGTTCTGGTTCAAAGT
TTTGCTCGCACATCCTGCCATCGGCGAGCACATCTCCGACCCGGATCAAG
GCGCCCTGCGTCATCTGACGGCTGTGGAGGTGGTGGACGTCACAGAGGAA
AGGTTGGATGGAGCAAGGGAAGAAGAAAGTGAAGGCGGGCAGGAGCAGGG
CGGTGGCAGGATCCTGCCGGATTATCGCGTGAACTTCTATTTCTCCCCCA
ATGTGTATTTTGAGAACTCGGTGCTGTGGAAGGAATTCCGTTTCCGCAAC
GACGAAGCCACCGTCTCGGCGTCGGAAGTGTTGTGGAAGGATACGCAGGA
AAGCAAAGGCTTGCAAGAAACCCTGGTGCCTCACCTGCTGGCGCAAGACC
CGGTCCCCGAGAACGTCCAGCCGTCTTTCTTCTCCATCTTCCACGCGGAG
GATCGGGACCTGGAGATGGGCGATGTCCTCAAGGAGGAGGTGTGGAGGGA
TCCGGTTGGGATATATTTGTCTGCGGATTTCGAAGAGGAAGGGGAGGAGG
GGGAGGAGGGGGAGGAGGGGGAGGAGGGGGAGGAGGATGGAAGGACAGGA
AGAGGGTAGAGGGCAGAGAAAATTTGCGTCTTACATATGGACCCTCACGT
GAACCATGCACTGGAATGAGGCTATCTACGTTCTTCGTTTAGTCTTTGTT
GCCTGGTCTCATAGAAGGAGTTGCCATCTCCTCCTCCTTGTTCCTTGCCA
TCCCTCTTTATACCCGCAGCCATTAACAACGGCCACGGAAGTGATGCGCG
AGGCACTGTCATACCCTATGACATGATCAAAGCCTCACACCGGCATGTTT
ATAAAACACTCCCG back to topprotein sequence of rna486 >rna486-protein ID=rna486-protein|Name=rna486|organism=Nannochloropsis gaditana|type=polypeptide|length=291bp
MSTKRGGGAVSLCELMKKKSSRKNSSDEASTPAETISRSHSQQGSEGEVE
HAVKAIATVQSELNSLEVSQTQALTEILKKYKELKKPVYSRRQEAIKQVP
EFWFKVLLAHPAIGEHISDPDQGALRHLTAVEVVDVTEERLDGAREEESE
GGQEQGGGRILPDYRVNFYFSPNVYFENSVLWKEFRFRNDEATVSASEVL
WKDTQESKGLQETLVPHLLAQDPVPENVQPSFFSIFHAEDRDLEMGDVLK
EEVWRDPVGIYLSADFEEEGEEGEEGEEGEEGEEDGRTGRG back to topmRNA from alignment at CM002455.1:1220639..1222322+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna486 ID=rna486|Name=rna486|organism=Nannochloropsis gaditana|type=mRNA|length=1684bp|location=Sequence derived from alignment at CM002455.1:1220639..1222322+ (Nannochloropsis gaditana)
TGCAAGACAAAATCAAATCATATAGCGCATCATCATATTATTATTTGAAA
ATATGATTCTTTTGCGCGGCTCGTGAGCTATTCAGGCGCTCAACACATAA
AACGTCTTTTAGAAGATACTTAAAAGATCTGGATCATGTGACTTTCTTGG
GCTTAAGATATCAGTATTAAAttatttcttccttcctaTTGTAGCCCTCA
CTTTCCCTGAGCACAGCCATCTTGAAGGAAGATGTCAACGAAACGTGGTG
GCGGAGCCGTTTCCTTATGCGAACTtatgaaaaaaaaggtaGGGCGTGTC
TTCTATTTAGGCGTCGCTCAGTCACTCCGTACATCACATAAACGAGAATC
TCGTGTAGCTTCAGCTATCGATAATGTCGAAGTTGAAGGAACCTAAAATC
TGGATGGAAATGAAAAGGAATGAATTCAGTTGAGAGATCTCTCTGAAGCA
GATGCATAACTTGTCTAGTGTCTTGGTCGCATACAAACAGTCGTCTCGCA
AAAATAGCTCGGATGAAGCAAGCACTCCGGCGGAGACTATAAGTCGATCA
CACTCTCAACAAGGAAGCGAGGGTGAGGTGGAGCACGCGGTAAAAGCCAT
CGCTACGGTACAGTCTGAGCTTAATTCGTTGGAAGTATCCCAGACGCAGG
CTTTGACGGAGATCTTGAAGAAATACAAGGAATTGAAAAAGCCAGTTTAC
AGCAGGCGACAAGAGGCTATCAAGCAGGTACACTATTTGCTAAGTGGCAT
GTCGAGGCGCCTAATCCACAAATCAAAAGAGGACGTATCGCGATAGACAA
AGTCAAAGACGCTCACTCGTCACCGCCGACAAACGCACGCGTCACAGGTC
CCTGAGTTCTGGTTCAAAGTTTTGCTCGCACATCCTGCCATCGGCGAGCA
CATCTCCGACCCGGATCAAGGCGCCCTGCGTCATCTGACGGctgtggagg
tggtggacgtCACAGAGGAAAGGTTGGAtggagcaagggaagaagaaagt
gaaggcgggcaggagcagggcggtGGCAGGATCCTGCCGGATTATCGCGT
GAACTTCTATTTCTCCCCCAATGTGTATTTTGAGAACTCGGTGCTGTGGA
AGGAATTCCGTTTCCGCAACGACGAAGCCACCGTCTCGGCGTCGGAAGTG
TTGTGGAAGGATACGCAGGAAAGCAAAGGCTTGCAAGAAACCCTGGTGCC
TCACCTGCTGGCGCAAGACCCGGTCCCCGAGAACGTCCAGCcgtctttct
tctccatcttccaCGCGGAGGATCGGGACCTGGAGATGGGCGATGtcctc
aaggaggaggtgtggagGGATCCGGTTGGGATATATTTGTCTGCGGAttt
cgaagaggaaggggaggagggggaggagggggaggagggggaggaggggg
aggaggatggaaggacaggaagagggtAGAGGGCAGAGAAAATTTGCGTC
TTACATATGGACCCTCACGTGAACCATGCACTGGAATGAGGCTATCTACG
TTCTTCGTTTAGTCTTTGTTGCCTGGTCTCATAGAAGGAGttgccatctc
ctcctccttgttcctTGCCATCCCTCTTTATACCCGCAGCCATTAACAAC
GGCCACGGAAGTGATGCGCGAGGCACTGTCATACCCTATGACATGATCAA
AGCCTCACACCGGCATGTTTATAAAACACTCCCG back to topCoding sequence (CDS) from alignment at CM002455.1:1220639..1222322+ >rna486 ID=rna486|Name=rna486|organism=Nannochloropsis gaditana|type=CDS|length=2628bp|location=Sequence derived from alignment at CM002455.1:1220639..1222322+ (Nannochloropsis gaditana)
ATGTCAACGAAACGTGGTGGCGGAGCCGTTTCCTTATGCGAACTtatgaa
aaaaaagTCGTCTCGCAAAAATAGCTCGGATGAAGCAAGCACTCCGGCGG
AGACTATAAGTCGATCACACTCTCAACAAGGAAGCGAGGGTGAGGTGGAG
CACGCGGTAAAAGCCATCGCTACGGTACAGTCTGAGCTTAATTCGTTGGA
AGTATCCCAGACGCAGGCTTTGACGGAGATCTTGAAGAAATACAAGGAAT
TGAAAAAGCCAGTTTACAGCAGGCGACAAGAGGCTATCAAGCAGGTCCCT
GAGTTCTGGTTCAAAGTTTTGCTCGCACATCCTGCCATCGGCGAGCACAT
CTCCGACCCGGATCAAGGCGCCCTGCGTCATCTGACGGctgtggaggtgg
tggacgtCACAGAGGAAAGGTTGGAtggagcaagggaagaagaaagtgaa
ggcgggcaggagcagggcggtGGCAGGATCCTGCCGGATTATCGCGTGAA
CTTCTATTTCTCCCCCAATGTGTATTTTGAGAACTCGGTGCTGTGGAAGG
AATTCCGTTTCCGCAACGACGAAGCCACCGTCTCGGCGTCGGAAGTGTTG
TGGAAGGATACGCAGGAAAGCAAAGGCTTGCAAGAAACCCTGGTGCCTCA
CCTGCTGGCGCAAGACCCGGTCCCCGAGAACGTCCAGCcgtctttcttct
ccatcttccaCGCGGAGGATCGGGACCTGGAGATGGGCGATGtcctcaag
gaggaggtgtggagGGATCCGGTTGGGATATATTTGTCTGCGGAtttcga
agaggaaggggaggagggggaggagggggaggagggggaggagggggagg
aggatggaaggacaggaagagggtAGATGTCAACGAAACGTGGTGGCGGA
GCCGTTTCCTTATGCGAACTtatgaaaaaaaagTCGTCTCGCAAAAATAG
CTCGGATGAAGCAAGCACTCCGGCGGAGACTATAAGTCGATCACACTCTC
AACAAGGAAGCGAGGGTGAGGTGGAGCACGCGGTAAAAGCCATCGCTACG
GTACAGTCTGAGCTTAATTCGTTGGAAGTATCCCAGACGCAGGCTTTGAC
GGAGATCTTGAAGAAATACAAGGAATTGAAAAAGCCAGTTTACAGCAGGC
GACAAGAGGCTATCAAGCAGGTCCCTGAGTTCTGGTTCAAAGTTTTGCTC
GCACATCCTGCCATCGGCGAGCACATCTCCGACCCGGATCAAGGCGCCCT
GCGTCATCTGACGGctgtggaggtggtggacgtCACAGAGGAAAGGTTGG
AtggagcaagggaagaagaaagtgaaggcgggcaggagcagggcggtGGC
AGGATCCTGCCGGATTATCGCGTGAACTTCTATTTCTCCCCCAATGTGTA
TTTTGAGAACTCGGTGCTGTGGAAGGAATTCCGTTTCCGCAACGACGAAG
CCACCGTCTCGGCGTCGGAAGTGTTGTGGAAGGATACGCAGGAAAGCAAA
GGCTTGCAAGAAACCCTGGTGCCTCACCTGCTGGCGCAAGACCCGGTCCC
CGAGAACGTCCAGCcgtctttcttctccatcttccaCGCGGAGGATCGGG
ACCTGGAGATGGGCGATGtcctcaaggaggaggtgtggagGGATCCGGTT
GGGATATATTTGTCTGCGGAtttcgaagaggaaggggaggagggggagga
gggggaggagggggaggagggggaggaggatggaaggacaggaagagggt
AGATGTCAACGAAACGTGGTGGCGGAGCCGTTTCCTTATGCGAACTtatg
aaaaaaaagTCGTCTCGCAAAAATAGCTCGGATGAAGCAAGCACTCCGGC
GGAGACTATAAGTCGATCACACTCTCAACAAGGAAGCGAGGGTGAGGTGG
AGCACGCGGTAAAAGCCATCGCTACGGTACAGTCTGAGCTTAATTCGTTG
GAAGTATCCCAGACGCAGGCTTTGACGGAGATCTTGAAGAAATACAAGGA
ATTGAAAAAGCCAGTTTACAGCAGGCGACAAGAGGCTATCAAGCAGGTCC
CTGAGTTCTGGTTCAAAGTTTTGCTCGCACATCCTGCCATCGGCGAGCAC
ATCTCCGACCCGGATCAAGGCGCCCTGCGTCATCTGACGGctgtggaggt
ggtggacgtCACAGAGGAAAGGTTGGAtggagcaagggaagaagaaagtg
aaggcgggcaggagcagggcggtGGCAGGATCCTGCCGGATTATCGCGTG
AACTTCTATTTCTCCCCCAATGTGTATTTTGAGAACTCGGTGCTGTGGAA
GGAATTCCGTTTCCGCAACGACGAAGCCACCGTCTCGGCGTCGGAAGTGT
TGTGGAAGGATACGCAGGAAAGCAAAGGCTTGCAAGAAACCCTGGTGCCT
CACCTGCTGGCGCAAGACCCGGTCCCCGAGAACGTCCAGCcgtctttctt
ctccatcttccaCGCGGAGGATCGGGACCTGGAGATGGGCGATGtcctca
aggaggaggtgtggagGGATCCGGTTGGGATATATTTGTCTGCGGAtttc
gaagaggaaggggaggagggggaggagggggaggagggggaggaggggga
ggaggatggaaggacaggaagagggtAG back to top
|