rna4856, rna4856 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4856
Unique Name	rna4856
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1527
Alignment location	CM002464.1:508648..510617 +

Link to JBrowse

Properties


Property Name	Value
Product	maleylacetate reductase
Orig transcript id	gnl\|cribi\|Naga_100021g28.8780.mrna
Orig protein id	gnl\|cribi\|Naga_100021g28.8780
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:508648..510617 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g28	gene4690	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4856	rna4856-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25837.1	cds4844	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:508648..510617+
coding sequence from alignment at CM002464.1:508648..510617+

mRNA sequence

>rna4856 ID=rna4856|Name=rna4856|organism=Nannochloropsis gaditana|type=mRNA|length=1527bp
ATGTTTTCGGAGATGGCGCGGCTGCCCGTCGTTCATATCGGCAGGTCGGC
GCTTGGACTTCTTCTCCTTCTTTGTTCCTGCACGTTCTTCGCCCAGGCTC
AGAAAAACATAGAAGTTGTGCGCAAAATAGATTTGAGCTCAGCGGTTGTT
CGTATCGATATGACGATTTTGGCCAACGACTTGAATGGTAAATATGTCGT
TTCCTTTGCGAAACATTTGGCTCCCAAACTCTCTTTCCTTCAAATCGCAA
TGGGCAACCAGCCCCTTCCCTGGATTCGTTTGCCCGATGCCGGGGACGGG
CTGGCCCACTTCCAGGCGGAAGTGCCTCAGGGCATGACTGAAGCCAAGCT
CACTGTATTTGGTACGCTTGCTGGTGCCTTGGTGCCAGTGCCAGCCGAAA
TAGAATTGACTGAGAATCAGTTAGTACAGTATCTCGATAGCCATACGTTC
CCCTCCCTTTACCCTACGGCGCGGCAGACCACGACTTTCGCGCTGGGAGT
CTCACACATCGAAAGTTTTACTAAGCGCGACCCTTACTCGAGAACGGGCA
AAGATCTGGTGTTCGGGCCTATCACGGACATCGAGGGTGGAGCCGCAGCG
TCGCTTTCGCCGATCACGATCCATTACCAGAACAACGCCCCGTTTGTCAA
GGCTCTGCAGGCTATCCGGGAGATCGAGGTGTCGCACTGGGGCAATGTGG
CCTTTGAAGATTTCGTGGAGGTAAAGCACGCGGGCGCGGCTCTGAAGGGA
GGTTTCTCTCGGCTCGACTTCCAAGCCCGCGGAGCGCCATCCGCCGTACG
AGGCCTGGTGGCCGTGCTCCCCCTGGGCGCCCGCAGCATCTACTACCGCG
ACCAGATCGGGAACATCTCCACCTCTGTGATCCAGCACGGGCCGGACGGT
GTGGAATTGAACTTGCAGTCGCGCTTTCCGCTGGTGGGGGGCTGGAAGAA
TCAATTCTATCAGGGCTACAGCGTGCCGGTGCAGGAGCTCCTCACGGTCG
GCCCTTCGAGCGGTGGTGTGAGGCGCTTCACCCTCACAGTGCCATTTTCT
GTTCCCTTCCCGGAGGTCTGGGTGGAGGATCTGACGGTCAAGGTGGTGCT
GCCAGAGTGGGCGGCAGACGTGCGCGTGGAGATCCCCTTCTCAGTGGACG
AAGAGCACCAGACCCACCGACTTACGTTCTTGGACTCGTCCTTGAGCGGA
GGTCGTCCTGTACTGATTCTGAAAAAGAGAAACGTGGTCGCAGAGCACAT
GCAGCCCATGGTACTCTCCTATTCTTTCCCCACGCGCGCCATGCTCCTGG
AACCTCTGTATTTGGTCCTTGCCTTCTTCTCCTTCTTTCTCGTCTGCATG
ATTTTCGCGCGCGTCGATCTTCGCATTAACGCCGACGGGGGCAAAAAGAA
GAGCAAGACGCACAACTTAAAAAGCAGCTACAGTCCGTCTTGGGAGATCG
CTGCGTGCGGCAAAGTAAGCAAAGTTGAAATCTCACGTTTTGCAATGATT
GAATGCAGATGGAGATTAGTTCAGTAA

protein sequence of rna4856

>rna4856-protein ID=rna4856-protein|Name=rna4856|organism=Nannochloropsis gaditana|type=polypeptide|length=637bp
MREFVVKGPPARIIFGPGCVSRVGAAEIRTLGCKRLVMVGSVRSLKNIPA
VVALQSELGDLVVGTIPRVKENVYGDLVEEAGKEVGRLRADALVVVGGGT
ALGLAKALANLLPLSSTGPSQMPSPLTIISIPTTYSGSEVTSYHGVSVVL
NPAAQALIDKDANKPHGIKARKVAVRNQAVRPALVLYDAHFLQSLPYPLT
ISSLFNALAHAFEALWVNPMPSPQACWAASESVNIILRYIGNLDPSGRVA
DASESLVVVNELLYGAYLAAYSLDTEDLGLQHRLAHVLGGTYSVPHAQAH
MLLLPHVLRFYEDAWADGGEKTTPLSHLKLGQAPSTQSLARCIFDIQRSL
VHSKPPLSLQDVGLGQPDLEGVVDTLLEHGGIPVRQDVPISKPLLLGLLQ
HAISGESPPWEGRPASRTPRISYLSDQDFRAKDPEAASKIMARRHGQLLH
LDRVLMHAPTVAQGWNAMFGSLRSGLRSIDGRLRELVILRVAVVNQAYYE
YFQHYPVFLKEGGSVPEAEALGNWRSEASKHLFGAKDRAVLAYVDEMTGR
IQVQDKTVKILFATASTEAPESFVVELTALCAGYNMVSRFLEALHLTAES
ENSAALPRMPVDIHIQTLAGIESTKTHETSHSYPSDS

mRNA from alignment at CM002464.1:508648..510617+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4856 ID=rna4856|Name=rna4856|organism=Nannochloropsis gaditana|type=mRNA|length=1970bp|location=Sequence derived from alignment at CM002464.1:508648..510617+ (Nannochloropsis gaditana)
ATGCGTGAATTTGTCGTCAAAGGACCTCCGGCTCGGATAATTTTTGGCCC
TGGGTGCGTCTCGCGAGTAGGAGCAGCTGAAATTCGTACTTTAGGATGCA
AACGCCTGGTTATGGTCGGCTCTGTGCGTTCATTAAAAAATATACCGGCT
GTAGTTGCGCTGCAGTCCGAACTTGGCGATCTGGTGGTGGGGACCATCCC
CCGCGTGAAAGAGAACGTCTACGGTGACCTTGTCGAGGAAGCTGGCAAAG
AGGTGGGAAGGCTTAGGGCGGACGCATTGGTTGTGGttggggggggcacg
gcTTTGGGACTTGCGAAGGCACTCGCAAATTTGCTGCCGCTTTCTTCCAC
TGGACCCTCACAAATGCCATCGCCTTTGACGATTATCAGCATCCCCACTA
CCTATTCGGGATCGGAAGTCACGTCCTACCACGGAGTATCGGTAGTTCTC
AATCCCGCAGCGCAAGCACTGATTGACAAAGATGCGAATAAGCCGCATGG
CATCAAGGCTCGCAAGGTAGCCGTGCGCAATCAAGCTGTGCGGCCTGCCC
TTGTTTTATACGACGCCCACTTTTTGCAGAGCCTGCCTTATCCTCTTACG
ATTTCGTCTCTGTTCAACGCTCTAGCCCACGCATTTGAGGCGCTTTGGGT
CAATCCTatgccctccccccaggcgTGCTGGGCGGCGTCGGAAAGCGTCA
ACATCATTTTGCGGTATATTGGTAATTTGGACCCCTCCGGCAGGGTGGCA
GACGCGAGTGAAAGCCTGGTGGTCGTGAACGAGCTTTTGTACGGAGCGTA
TCTGGCTGCTTACAGTCTCGATACCGAAGACTTGGGTCTGCAGCACCGGT
TGGCTCACGTCCTGGGAGGAACGTACAGCGTGCCGCACGCTCAGGCGCAC
ATGCTGCTTTTGCCGCACGTGCTCCGTTTCTACGAGGACGCCTGGGCTGA
TGGTGGCGAGAAGACGACACCCTTGAGCCACTTGAAGCTGGGCCAAGCTC
CGTCGACGCAAAGTCTGGCTCGTTGCATTTTTGACATTCAGCGGTCACTC
GTTCACTCAAAGCCACCTTTGAGCCTTCAGGACGTGGGGCTGGGCCAACC
CGATCTGGAGGGTGTAGTGGACACGCTTCTCGAGCACGGCGGCATTCCCG
TGCGCCAGGACGTTCCAATTAGCAAACCTCTCCTTCTGGGCCTGCTGCAG
CATGCAATTAGTGGCGAGTCGCCGccctgggagggacggccCGCATCACG
GACACCGAGAATCTCCTATCTCTCAGACCAAGACTTCCGTGCCAAAGATC
CCGAGGCGGCCAGCAAGATAATGGCGCGGCGGCACGGGCAACTGCTACAT
CTTGACCGCGTCCTCATGCATGCTCCCACCGTTGCTCAAGGGTGGAACGC
CATGTTCGGCAGCTTGCGGTCCGGTCTCCGCTCCATagatggccgcctcc
gcgaACTGGTCATCCTCCGCGTCGCTGTGGTGAACCAGGCCTACTACGAG
TACTTCCAGCATTACCCTGTCTTTttgaaagaaggcgggagtGTCCCCGA
AGCAGAAGCTTTAGGAAACTGGAGAAGCGAGGCAAGCAAGCATTTATTCG
GGGCAAAAGACCGGGCAGTGCTTGCTTACGTTGATGAAATGACTGGTCGT
ATTCAGGTGCAGGATAAGACGGTGAAGATACTATTTGCGACAGCATCCAC
CGAAGCACCTGAGTCATTCGTGGTGGAGCTGACCGCTCTTTGTGCAGGAT
ATAATATGGTCTCCCGCTTCTTAGAGGCGCTGCATCTGACAGCCGAGTCA
GAGAATTCCGCTGCGTTGCCGCGCATGCCTGTAGACATACATAGTACATT
AGGCAATTGATCGGTGGTAATTGCTAGAATTTGTTGATAACGCTTCAAGT
ACAAACATTGGCGGGTATCGAGTCAACTAAGACACACGAAACGTCGCATT
CGTACCCGAGTGATTCTTGA

Coding sequence (CDS) from alignment at CM002464.1:508648..510617+

>rna4856 ID=rna4856|Name=rna4856|organism=Nannochloropsis gaditana|type=CDS|length=3828bp|location=Sequence derived from alignment at CM002464.1:508648..510617+ (Nannochloropsis gaditana)
ATGCGTGAATTTGTCGTCAAAGGACCTCCGGCTCGGATAATTTTTGGCCC
TGGGTGCGTCTCGCGAGTAGGAGCAGCTGAAATTCGTACTTTAGGATGCA
AACGCCTGGTTATGGTCGGCTCTGTGCGTTCATTAAAAAATATACCGGCT
GTAGTTGCGCTGCAGTCCGAACTTGGCGATCTGGTGGTGGGGACCATCCC
CCGCGTGAAAGAGAACGTCTACGGTGACCTTGTCGAGGAAGCTGGCAAAG
AGGTGGGAAGGCTTAGGGCGGACGCATTGGTTGTGGttggggggggcacg
gcTTTGGGACTTGCGAAGGCACTCGCAAATTTGCTGCCGCTTTCTTCCAC
TGGACCCTCACAAATGCCATCGCCTTTGACGATTATCAGCATCCCCACTA
CCTATTCGGGATCGGAAGTCACGTCCTACCACGGAGTATCGGTAGTTCTC
AATCCCGCAGCGCAAGCACTGATTGACAAAGATGCGAATAAGCCGCATGG
CATCAAGGCTCGCAAGGTAGCCGTGCGCAATCAAGCTGTGCGGCCTGCCC
TTGTTTTATACGACGCCCACTTTTTGCAGAGCCTGCCTTATCCTCTTACG
ATTTCGTCTCTGTTCAACGCTCTAGCCCACGCATTTGAGGCGCTTTGGGT
CAATCCTatgccctccccccaggcgTGCTGGGCGGCGTCGGAAAGCGTCA
ACATCATTTTGCGGTATATTGGTAATTTGGACCCCTCCGGCAGGGTGGCA
GACGCGAGTGAAAGCCTGGTGGTCGTGAACGAGCTTTTGTACGGAGCGTA
TCTGGCTGCTTACAGTCTCGATACCGAAGACTTGGGTCTGCAGCACCGGT
TGGCTCACGTCCTGGGAGGAACGTACAGCGTGCCGCACGCTCAGGCGCAC
ATGCTGCTTTTGCCGCACGTGCTCCGTTTCTACGAGGACGCCTGGGCTGA
TGGTGGCGAGAAGACGACACCCTTGAGCCACTTGAAGCTGGGCCAAGCTC
CGTCGACGCAAAGTCTGGCTCGTTGCATTTTTGACATTCAGCGGTCACTC
GTTCACTCAAAGCCACCTTTGAGCCTTCAGGACGTGGGGCTGGGCCAACC
CGATCTGGAGGGTGTAGTGGACACGCTTCTCGAGCACGGCGGCATTCCCG
TGCGCCAGGACGTTCCAATTAGCAAACCTCTCCTTCTGGGCCTGCTGCAG
CATGCAATTAGTGGCGAGTCGCCGccctgggagggacggccCGCATCACG
GACACCGAGAATCTCCTATCTCTCAGACCAAGACTTCCGTGCCAAAGATC
CCGAGGCGGCCAGCAAGATAATGGCGCGGCGGCACGGGCAACTGCTACAT
CTTGACCGCGTCCTCATGCATGCTCCCACCGTTGCTCAAGGGTGGAACGC
CATGTTCGGCAGCTTGCGGTCCGGTCTCCGCTCCATagatggccgcctcc
gcgaACTGGTCATCCTCCGCGTCGCTGTGGTGAACCAGGCCTACTACGAG
TACTTCCAGCATTACCCTGTCTTTttgaaagaaggcgggagtGTCCCCGA
AGCAGAAGCTTTAGGAAACTGGAGAAGCGAGGCAAGCAAGCATTTATTCG
GGGCAAAAGACCGGGCAGTGCTTGCTTACGTTGATGAAATGACTGGTCGT
ATTCAGGTGCAGGATAAGACGGTGAAGATACTATTTGCGACAGCATCCAC
CGAAGCACCTGAGTCATTCGTGGTGGAGCTGACCGCTCTTTGTGCAGGAT
ATAATATGGTCTCCCGCTTCTTAGAGGCGCTGCATCTGACAGCCGAGTCA
GAGAATTCCGCTGCGTTGCCGCGCATGCCTGTAGACATACATATACAAAC
ATTGGCGGGTATCGAGTCAACTAAGACACACGAAACGTCGCATTCGTACC
CGAGTGATTCTTGAATGCGTGAATTTGTCGTCAAAGGACCTCCGGCTCGG
ATAATTTTTGGCCCTGGGTGCGTCTCGCGAGTAGGAGCAGCTGAAATTCG
TACTTTAGGATGCAAACGCCTGGTTATGGTCGGCTCTGTGCGTTCATTAA
AAAATATACCGGCTGTAGTTGCGCTGCAGTCCGAACTTGGCGATCTGGTG
GTGGGGACCATCCCCCGCGTGAAAGAGAACGTCTACGGTGACCTTGTCGA
GGAAGCTGGCAAAGAGGTGGGAAGGCTTAGGGCGGACGCATTGGTTGTGG
ttggggggggcacggcTTTGGGACTTGCGAAGGCACTCGCAAATTTGCTG
CCGCTTTCTTCCACTGGACCCTCACAAATGCCATCGCCTTTGACGATTAT
CAGCATCCCCACTACCTATTCGGGATCGGAAGTCACGTCCTACCACGGAG
TATCGGTAGTTCTCAATCCCGCAGCGCAAGCACTGATTGACAAAGATGCG
AATAAGCCGCATGGCATCAAGGCTCGCAAGGTAGCCGTGCGCAATCAAGC
TGTGCGGCCTGCCCTTGTTTTATACGACGCCCACTTTTTGCAGAGCCTGC
CTTATCCTCTTACGATTTCGTCTCTGTTCAACGCTCTAGCCCACGCATTT
GAGGCGCTTTGGGTCAATCCTatgccctccccccaggcgTGCTGGGCGGC
GTCGGAAAGCGTCAACATCATTTTGCGGTATATTGGTAATTTGGACCCCT
CCGGCAGGGTGGCAGACGCGAGTGAAAGCCTGGTGGTCGTGAACGAGCTT
TTGTACGGAGCGTATCTGGCTGCTTACAGTCTCGATACCGAAGACTTGGG
TCTGCAGCACCGGTTGGCTCACGTCCTGGGAGGAACGTACAGCGTGCCGC
ACGCTCAGGCGCACATGCTGCTTTTGCCGCACGTGCTCCGTTTCTACGAG
GACGCCTGGGCTGATGGTGGCGAGAAGACGACACCCTTGAGCCACTTGAA
GCTGGGCCAAGCTCCGTCGACGCAAAGTCTGGCTCGTTGCATTTTTGACA
TTCAGCGGTCACTCGTTCACTCAAAGCCACCTTTGAGCCTTCAGGACGTG
GGGCTGGGCCAACCCGATCTGGAGGGTGTAGTGGACACGCTTCTCGAGCA
CGGCGGCATTCCCGTGCGCCAGGACGTTCCAATTAGCAAACCTCTCCTTC
TGGGCCTGCTGCAGCATGCAATTAGTGGCGAGTCGCCGccctgggaggga
cggccCGCATCACGGACACCGAGAATCTCCTATCTCTCAGACCAAGACTT
CCGTGCCAAAGATCCCGAGGCGGCCAGCAAGATAATGGCGCGGCGGCACG
GGCAACTGCTACATCTTGACCGCGTCCTCATGCATGCTCCCACCGTTGCT
CAAGGGTGGAACGCCATGTTCGGCAGCTTGCGGTCCGGTCTCCGCTCCAT
agatggccgcctccgcgaACTGGTCATCCTCCGCGTCGCTGTGGTGAACC
AGGCCTACTACGAGTACTTCCAGCATTACCCTGTCTTTttgaaagaaggc
gggagtGTCCCCGAAGCAGAAGCTTTAGGAAACTGGAGAAGCGAGGCAAG
CAAGCATTTATTCGGGGCAAAAGACCGGGCAGTGCTTGCTTACGTTGATG
AAATGACTGGTCGTATTCAGGTGCAGGATAAGACGGTGAAGATACTATTT
GCGACAGCATCCACCGAAGCACCTGAGTCATTCGTGGTGGAGCTGACCGC
TCTTTGTGCAGGATATAATATGGTCTCCCGCTTCTTAGAGGCGCTGCATC
TGACAGCCGAGTCAGAGAATTCCGCTGCGTTGCCGCGCATGCCTGTAGAC
ATACATATACAAACATTGGCGGGTATCGAGTCAACTAAGACACACGAAAC
GTCGCATTCGTACCCGAGTGATTCTTGA

Synonyms

Publications